Wall clock time and date at job start Tue Mar 31 2020 06:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46960 * 2 1 4 4 C 1.50697 * 110.43418 * 305.62201 * 3 2 1 5 5 O 1.21280 * 119.99751 * 119.89559 * 4 3 2 6 6 N 1.34777 * 120.00123 * 299.89134 * 4 3 2 7 7 C 1.47875 * 126.94380 * 355.07202 * 6 4 3 8 8 C 1.56013 * 105.18932 * 181.97132 * 7 6 4 9 9 H 1.09001 * 116.24875 * 158.88781 * 8 7 6 10 10 C 1.57348 * 99.49273 * 32.81153 * 8 7 6 11 11 C 1.49290 * 126.94394 * 175.09730 * 6 4 3 12 12 H 1.08997 * 116.14986 * 16.68514 * 11 6 4 13 13 C 1.56016 * 104.09354 * 247.53805 * 11 6 4 14 14 N 1.49293 * 104.09641 * 288.81846 * 8 7 6 15 15 C 1.36938 * 126.94417 * 246.69948 * 14 8 7 16 16 H 1.07995 * 119.99780 * 0.02562 * 15 14 8 17 17 C 1.38814 * 119.99696 * 179.97438 * 15 14 8 18 18 N 1.31614 * 119.99927 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99754 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47151 * 90.00320 * 19 17 15 21 21 H 1.48503 * 109.47083 * 210.00044 * 19 17 15 22 22 H 1.48502 * 109.47300 * 330.00148 * 19 17 15 23 23 C 1.54888 * 110.48693 * 68.16538 * 3 2 1 24 24 C 1.55232 * 102.58857 * 156.67320 * 23 3 2 25 25 C 1.54260 * 104.23438 * 322.08544 * 24 23 3 26 26 C 1.53880 * 106.59931 * 23.60661 * 25 24 23 27 27 H 1.09001 * 109.47190 * 55.23043 * 1 2 3 28 28 H 1.09001 * 109.47362 * 175.23385 * 1 2 3 29 29 H 1.09000 * 109.47360 * 295.23197 * 1 2 3 30 30 H 1.08995 * 109.47403 * 240.00324 * 2 1 3 31 31 H 1.08998 * 109.47599 * 119.99632 * 2 1 3 32 32 H 1.08995 * 110.31565 * 300.92982 * 7 6 4 33 33 H 1.09006 * 110.31396 * 63.01717 * 7 6 4 34 34 H 1.09000 * 112.35703 * 191.71636 * 10 8 7 35 35 H 1.09006 * 112.36839 * 64.28945 * 10 8 7 36 36 H 1.09002 * 110.31395 * 47.67000 * 13 11 6 37 37 H 1.08995 * 110.31942 * 169.85926 * 13 11 6 38 38 H 0.97003 * 119.99878 * 180.02562 * 18 17 15 39 39 H 1.08996 * 110.75644 * 275.06964 * 23 3 2 40 40 H 1.09004 * 110.75423 * 38.43510 * 23 3 2 41 41 H 1.09000 * 110.47140 * 203.39075 * 24 23 3 42 42 H 1.08999 * 110.58031 * 80.83268 * 24 23 3 43 43 H 1.09005 * 110.03453 * 264.32329 * 25 24 23 44 44 H 1.08994 * 110.07775 * 142.91670 * 25 24 23 45 45 H 1.08999 * 110.03210 * 240.71771 * 26 25 24 46 46 H 1.09002 * 110.06933 * 119.30551 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.4398 2.2128 -1.1479 5 8 0.7644 3.1964 -0.9308 6 7 1.6538 1.8085 -2.4157 7 6 2.5274 0.7013 -2.8600 8 6 2.4391 0.7107 -4.4176 9 1 3.2576 0.2260 -4.9499 10 6 2.2590 2.2553 -4.6579 11 6 1.0572 2.3885 -3.6552 12 1 0.6133 3.3791 -3.5566 13 6 0.1188 1.2618 -4.1883 14 7 1.0612 0.2143 -4.7067 15 6 0.7218 -0.9642 -5.3160 16 1 1.4939 -1.6452 -5.6422 17 6 -0.6145 -1.2838 -5.5134 18 7 -1.5553 -0.4540 -5.1153 19 14 -1.0774 -2.8917 -6.3438 20 1 -1.2325 -3.9527 -5.3165 21 1 -2.3583 -2.7202 -7.0754 22 1 -0.0096 -3.2805 -7.2997 23 6 1.7118 2.1335 1.3468 24 6 2.7703 3.2672 1.4122 25 6 4.0447 2.6308 0.8202 26 6 3.5804 1.4705 -0.0777 27 1 -0.3634 0.5861 -0.8442 28 1 -0.3634 -1.0241 -0.0854 29 1 -0.3634 0.4381 0.9296 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.5539 0.8765 -2.5381 33 1 2.1648 -0.2483 -2.4662 34 1 1.9705 2.4844 -5.6838 35 1 3.1298 2.8289 -4.3403 36 1 -0.4996 0.8707 -3.3804 37 1 -0.5073 1.6412 -4.9957 38 1 -2.4892 -0.6775 -5.2529 39 1 0.7023 2.5443 1.3344 40 1 1.8373 1.4393 2.1778 41 1 2.9401 3.5711 2.4451 42 1 2.4555 4.1204 0.8113 43 1 4.6796 2.2520 1.6212 44 1 4.5898 3.3659 0.2282 45 1 3.9899 0.5288 0.2876 46 1 3.8993 1.6424 -1.1057 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032709087.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:20 Heat of formation + Delta-G solvation = 10.576514 kcal Electronic energy + Delta-G solvation = -25816.789248 eV Core-core repulsion = 22514.499103 eV Total energy + Delta-G solvation = -3302.290145 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.61974 -38.71961 -36.52493 -33.68907 -33.05912 -31.37299 -29.31820 -28.48377 -28.38063 -27.61722 -25.19508 -23.82940 -22.59633 -21.87743 -20.43591 -19.88307 -19.36965 -18.25877 -16.84472 -16.02356 -15.84333 -15.41410 -15.14601 -14.64131 -14.37166 -13.96641 -13.65734 -13.21034 -13.10620 -12.93136 -12.53147 -12.33635 -11.94134 -11.80563 -11.65987 -11.41795 -11.29417 -11.11430 -11.02865 -10.94259 -10.85536 -10.78774 -10.76791 -10.55398 -10.46078 -10.35941 -10.30679 -10.09416 -9.99927 -9.58968 -9.16084 -8.69381 -7.91479 -6.92212 -5.76518 -3.10299 3.15520 3.36662 3.41660 3.44174 3.47749 4.41298 4.52499 4.66487 4.69740 4.98364 5.14563 5.21256 5.28600 5.36560 5.41020 5.48088 5.50612 5.57432 5.62821 5.66308 5.74315 5.79391 5.80602 5.83918 5.94657 5.96722 6.04293 6.06382 6.15617 6.25747 6.30044 6.31168 6.34221 6.39479 6.43927 6.49941 6.59402 6.60810 6.63447 6.78779 7.42101 7.48846 7.70726 8.05728 8.20394 8.71565 9.07370 9.70943 10.40301 11.35933 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.022851 B = 0.005254 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.061284 B = 5327.501974 C = 5676.712872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.077 4.077 4 C 0.548 3.452 5 O -0.557 6.557 6 N -0.604 5.604 7 C 0.078 3.922 8 C 0.141 3.859 9 H 0.105 0.895 10 C -0.151 4.151 11 C 0.095 3.905 12 H 0.110 0.890 13 C 0.178 3.822 14 N -0.598 5.598 15 C -0.230 4.230 16 H 0.079 0.921 17 C -0.005 4.005 18 N -0.920 5.920 19 Si 0.910 3.090 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.281 1.281 23 C -0.099 4.099 24 C -0.124 4.124 25 C -0.123 4.123 26 C -0.119 4.119 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.049 0.951 37 H 0.056 0.944 38 H 0.253 0.747 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.072 0.928 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.725 3.738 9.872 15.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.080 4.080 4 C 0.336 3.664 5 O -0.436 6.436 6 N -0.337 5.337 7 C -0.047 4.047 8 C 0.032 3.968 9 H 0.123 0.877 10 C -0.191 4.191 11 C -0.007 4.007 12 H 0.128 0.872 13 C 0.054 3.946 14 N -0.323 5.323 15 C -0.358 4.358 16 H 0.097 0.903 17 C -0.202 4.202 18 N -0.566 5.566 19 Si 0.741 3.259 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.207 1.207 23 C -0.137 4.137 24 C -0.161 4.161 25 C -0.161 4.161 26 C -0.156 4.156 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.110 4.127 9.977 14.791 hybrid contribution -0.375 -0.987 -0.410 1.133 sum 9.735 3.139 9.568 14.006 Atomic orbital electron populations 1.21761 0.95120 1.02019 1.01961 1.21674 0.96854 0.93710 1.02726 1.21612 0.95824 0.96102 0.94479 1.19810 0.80128 0.84063 0.82372 1.90620 1.41331 1.27483 1.84125 1.49122 1.46086 1.33504 1.04958 1.23551 0.92239 0.90062 0.98887 1.23195 0.90366 0.92348 0.90904 0.87732 1.24183 0.97327 0.98162 0.99391 1.24328 0.95852 0.98551 0.81990 0.87236 1.22281 0.89683 0.85495 0.97190 1.45747 0.98431 1.19577 1.68563 1.19045 0.91609 0.94086 1.31012 0.90277 1.24780 0.95656 0.98509 1.01256 1.69901 0.99364 1.35903 1.51459 0.86151 0.77762 0.83038 0.78962 1.21683 1.21722 1.20682 1.22457 1.00199 0.96685 0.94367 1.22404 0.94709 0.98669 1.00358 1.22126 0.97801 0.97402 0.98735 1.22372 0.93246 0.99150 1.00875 0.92109 0.92549 0.93039 0.90529 0.91515 0.92664 0.90599 0.89942 0.91804 0.93276 0.92584 0.93635 0.90314 0.91289 0.92044 0.91098 0.91963 0.92135 0.90957 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.49 37.15 0.35 -2.08 16 2 C -0.11 -1.60 4.69 -26.73 -0.13 -1.72 16 3 C -0.08 -1.11 0.28 -154.00 -0.04 -1.15 16 4 C 0.55 9.93 4.85 -10.99 -0.05 9.88 16 5 O -0.56 -11.76 15.51 5.56 0.09 -11.67 16 6 N -0.60 -10.98 2.89 -156.78 -0.45 -11.43 16 7 C 0.08 1.30 4.89 -1.68 -0.01 1.29 16 8 C 0.14 2.57 5.54 -62.40 -0.35 2.23 16 9 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 10 C -0.15 -2.56 6.83 -22.15 -0.15 -2.71 16 11 C 0.10 1.85 5.19 -62.55 -0.32 1.53 16 12 H 0.11 2.11 8.04 -51.93 -0.42 1.69 16 13 C 0.18 4.21 4.88 -0.40 0.00 4.21 16 14 N -0.60 -14.10 3.07 -154.32 -0.47 -14.57 16 15 C -0.23 -6.01 10.38 -15.06 -0.16 -6.16 16 16 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 17 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 18 N -0.92 -26.49 10.57 55.49 0.59 -25.90 16 19 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 C -0.10 -1.33 4.85 -24.55 -0.12 -1.44 16 24 C -0.12 -1.52 6.53 -24.89 -0.16 -1.68 16 25 C -0.12 -1.36 6.80 -25.61 -0.17 -1.54 16 26 C -0.12 -1.44 5.42 -25.61 -0.14 -1.58 16 27 H 0.06 1.19 6.93 -51.93 -0.36 0.83 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.75 7.69 -51.93 -0.40 0.35 16 30 H 0.08 1.17 5.06 -51.93 -0.26 0.90 16 31 H 0.07 0.80 8.06 -51.93 -0.42 0.38 16 32 H 0.06 0.77 5.82 -51.93 -0.30 0.47 16 33 H 0.08 1.39 5.71 -51.93 -0.30 1.09 16 34 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 1.33 7.73 -51.93 -0.40 0.93 16 37 H 0.06 1.47 7.48 -51.93 -0.39 1.08 16 38 H 0.25 7.17 8.31 -40.82 -0.34 6.84 16 39 H 0.08 1.20 7.38 -51.93 -0.38 0.82 16 40 H 0.07 0.79 8.00 -51.93 -0.42 0.37 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 1.01 7.72 -51.93 -0.40 0.61 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.76 7.84 -51.93 -0.41 0.36 16 46 H 0.07 0.94 5.11 -51.93 -0.27 0.67 16 LS Contribution 340.72 15.07 5.13 5.13 Total: -1.00 -30.09 340.72 -9.31 -39.40 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -7.62 Total: 3.71 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -1.55 Total: -1.18 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: -0.34 Total: -51.91 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.09 -9.31 -39.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032709087.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.980 kcal (2) G-P(sol) polarization free energy of solvation -30.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds