Wall clock time and date at job start Tue Mar 31 2020 06:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.47107 * 120.00257 * 2 1 4 4 O 1.21616 * 119.99717 * 81.42927 * 3 2 1 5 5 N 1.34770 * 119.99850 * 261.44009 * 3 2 1 6 6 C 1.46501 * 120.00351 * 355.26552 * 5 3 2 7 7 C 1.46508 * 119.99946 * 175.27187 * 5 3 2 8 8 H 1.09005 * 110.88356 * 356.11601 * 7 5 3 9 9 C 1.55153 * 111.00404 * 119.99354 * 7 5 3 10 10 C 1.54325 * 102.94215 * 82.57609 * 9 7 5 11 11 N 1.47024 * 107.26859 * 22.19002 * 10 9 7 12 12 C 1.36938 * 125.64404 * 181.02717 * 11 10 9 13 13 H 1.08005 * 119.99816 * 180.02562 * 12 11 10 14 14 C 1.38809 * 120.00206 * 0.29309 * 12 11 10 15 15 N 1.31614 * 120.00196 * 359.73360 * 14 12 11 16 16 Si 1.86807 * 120.00057 * 179.72565 * 14 12 11 17 17 H 1.48500 * 109.47029 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.46787 * 120.00401 * 16 14 12 19 19 H 1.48493 * 109.46990 * 240.00374 * 16 14 12 20 20 C 1.47418 * 108.70360 * 1.28868 * 11 10 9 21 21 C 1.33000 * 119.99952 * 180.02562 * 2 1 3 22 22 C 1.51445 * 126.33912 * 179.68584 * 21 2 1 23 23 C 1.54282 * 106.85054 * 180.24004 * 22 21 2 24 24 C 1.54979 * 103.65697 * 23.48815 * 23 22 21 25 25 C 1.51833 * 126.34166 * 0.02562 * 21 2 1 26 26 H 1.09002 * 109.47034 * 85.38460 * 1 2 3 27 27 H 1.08999 * 109.47188 * 205.38280 * 1 2 3 28 28 H 1.08998 * 109.47051 * 325.38375 * 1 2 3 29 29 H 1.08998 * 109.47194 * 273.44413 * 6 5 3 30 30 H 1.08996 * 109.46742 * 33.44835 * 6 5 3 31 31 H 1.08999 * 109.47202 * 153.44325 * 6 5 3 32 32 H 1.09005 * 110.72365 * 324.21278 * 9 7 5 33 33 H 1.08999 * 110.86954 * 201.00952 * 9 7 5 34 34 H 1.09005 * 109.88132 * 262.77255 * 10 9 7 35 35 H 1.08992 * 110.01209 * 141.68262 * 10 9 7 36 36 H 0.97005 * 120.00409 * 179.97438 * 15 14 12 37 37 H 1.08996 * 110.36811 * 94.48199 * 20 11 10 38 38 H 1.09005 * 110.36388 * 216.80431 * 20 11 10 39 39 H 1.09002 * 109.98943 * 299.72960 * 22 21 2 40 40 H 1.09000 * 109.98381 * 61.03289 * 22 21 2 41 41 H 1.08999 * 110.79426 * 264.86044 * 23 22 21 42 42 H 1.08996 * 110.42598 * 141.93095 * 23 22 21 43 43 H 1.09007 * 110.83327 * 204.49166 * 24 23 22 44 44 H 1.08998 * 110.83885 * 80.90984 * 24 23 22 45 45 H 1.08999 * 110.44142 * 274.92940 * 25 21 2 46 46 H 1.08998 * 110.44364 * 37.44722 * 25 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2426 1.2740 0.0000 4 8 2.4107 1.8790 1.0415 5 7 2.7299 1.7706 -1.1542 6 6 2.6185 0.9935 -2.3911 7 6 3.3714 3.0877 -1.1719 8 1 3.3131 3.5615 -0.1919 9 6 4.8429 2.9832 -1.6524 10 6 4.7043 2.9660 -3.1893 11 7 3.4078 3.5767 -3.5174 12 6 2.8958 3.7336 -4.7777 13 1 1.9298 4.1971 -4.9143 14 6 3.6156 3.2920 -5.8793 15 7 4.7927 2.7271 -5.7130 16 14 2.9136 3.4991 -7.5980 17 1 1.5857 4.1586 -7.5142 18 1 3.8318 4.3375 -8.4099 19 1 2.7656 2.1665 -8.2361 20 6 2.7533 3.9978 -2.2654 21 6 2.1720 -1.1518 -0.0005 22 6 3.6771 -1.3191 -0.0073 23 6 3.9586 -2.8360 -0.0113 24 6 2.6647 -3.4466 -0.6071 25 6 1.5627 -2.5425 -0.0017 26 1 -0.3633 0.0827 -1.0244 27 1 -0.3633 -0.9284 0.4405 28 1 -0.3633 0.8457 0.5838 29 1 3.4690 0.3168 -2.4729 30 1 1.6945 0.4156 -2.3750 31 1 2.6090 1.6700 -3.2456 32 1 5.3004 2.0601 -1.2961 33 1 5.4201 3.8486 -1.3269 34 1 4.7328 1.9387 -3.5526 35 1 5.5108 3.5419 -3.6430 36 1 5.2956 2.4181 -6.4828 37 1 2.9704 5.0455 -2.0576 38 1 1.6768 3.8378 -2.3277 39 1 4.0993 -0.8574 -0.8999 40 1 4.1064 -0.8651 0.8859 41 1 4.1232 -3.2017 1.0022 42 1 4.8159 -3.0621 -0.6453 43 1 2.5393 -4.4801 -0.2841 44 1 2.6684 -3.3771 -1.6949 45 1 1.3291 -2.8567 1.0156 46 1 0.6674 -2.5655 -0.6230 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032991817.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:59 Heat of formation + Delta-G solvation = 0.023268 kcal Electronic energy + Delta-G solvation = -24976.526739 eV Core-core repulsion = 21673.778971 eV Total energy + Delta-G solvation = -3302.747768 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.02394 -38.21142 -37.22293 -34.19482 -33.35792 -31.96057 -29.37236 -29.04758 -27.77933 -27.63173 -26.00541 -24.76693 -23.75189 -21.29544 -20.67353 -20.08037 -19.09854 -17.61580 -16.93454 -16.56991 -15.98648 -15.71753 -15.00380 -14.69773 -14.24415 -13.89336 -13.78554 -13.47710 -13.23960 -12.92252 -12.80252 -12.47222 -12.25700 -11.99284 -11.92305 -11.74568 -11.68331 -11.45698 -11.23938 -11.14800 -11.06487 -10.95919 -10.93014 -10.74765 -10.67666 -10.21864 -10.13655 -9.93037 -9.68430 -9.34000 -8.71769 -8.59604 -8.13406 -6.84901 -5.77917 -3.12330 1.87013 2.92393 3.35304 3.42107 3.43821 3.50851 4.35907 4.44361 4.59751 4.88412 4.92155 5.06075 5.29682 5.32210 5.37281 5.43031 5.49737 5.51065 5.62548 5.65228 5.69251 5.71704 5.76187 5.81955 5.84378 5.91983 5.94863 5.97560 6.02650 6.14199 6.23368 6.24958 6.34790 6.43998 6.53269 6.55320 6.64523 6.75032 6.84762 7.15039 7.51896 7.57474 7.77606 7.89860 8.18088 8.53474 9.15319 9.74807 10.40349 11.32989 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.016864 B = 0.004847 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.915699 B = 5775.757608 C = 6278.357094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.153 4.153 3 C 0.557 3.443 4 O -0.555 6.555 5 N -0.580 5.580 6 C 0.064 3.936 7 C 0.122 3.878 8 H 0.098 0.902 9 C -0.155 4.155 10 C 0.175 3.825 11 N -0.602 5.602 12 C -0.231 4.231 13 H 0.079 0.921 14 C -0.005 4.005 15 N -0.919 5.919 16 Si 0.910 3.090 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.290 1.290 20 C 0.125 3.875 21 C -0.089 4.089 22 C -0.103 4.103 23 C -0.121 4.121 24 C -0.123 4.123 25 C -0.091 4.091 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.126 0.874 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.042 0.958 36 H 0.252 0.748 37 H 0.032 0.968 38 H 0.044 0.956 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.578 -10.616 10.057 15.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.156 4.156 3 C 0.345 3.655 4 O -0.435 6.435 5 N -0.310 5.310 6 C -0.079 4.079 7 C 0.017 3.983 8 H 0.116 0.884 9 C -0.194 4.194 10 C 0.050 3.950 11 N -0.329 5.329 12 C -0.359 4.359 13 H 0.096 0.904 14 C -0.201 4.201 15 N -0.566 5.566 16 Si 0.740 3.260 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.217 1.217 20 C -0.002 4.002 21 C -0.090 4.090 22 C -0.140 4.140 23 C -0.159 4.159 24 C -0.160 4.160 25 C -0.128 4.128 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.144 0.856 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.062 0.938 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.097 0.903 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.412 -10.331 10.343 15.270 hybrid contribution -0.161 0.121 -1.040 1.060 sum -4.573 -10.210 9.303 14.550 Atomic orbital electron populations 1.20590 0.89836 1.02749 1.02390 1.20699 0.96460 0.91933 1.06518 1.18449 0.78547 0.84970 0.83487 1.90742 1.60027 1.61103 1.31610 1.47714 1.56528 1.18402 1.08391 1.22252 0.99677 0.97341 0.88610 1.22280 0.93139 0.83072 0.99763 0.88425 1.23230 0.95008 1.00987 1.00177 1.21226 0.88055 0.98556 0.87143 1.44620 1.17978 1.69597 1.00721 1.19088 1.01530 1.33871 0.81440 0.90362 1.24782 0.96728 1.00804 0.97816 1.69977 1.12745 1.45220 1.28696 0.86080 0.78067 0.77308 0.84523 1.20516 1.21779 1.21740 1.21939 0.96367 0.95161 0.86687 1.22364 0.95733 0.93499 0.97368 1.21296 0.92851 0.96957 1.02853 1.22338 0.97959 0.94598 1.00998 1.22502 0.94479 0.98405 1.00648 1.21427 0.98382 0.91667 1.01299 0.91045 0.91338 0.91481 0.93590 0.92850 0.85605 0.92062 0.91465 0.93120 0.93996 0.93748 0.95067 0.93763 0.90094 0.90849 0.91522 0.91240 0.91295 0.90970 0.90301 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.17 9.66 36.00 0.35 -0.83 16 2 C -0.15 -2.22 3.96 -102.84 -0.41 -2.63 16 3 C 0.56 9.95 6.44 -12.67 -0.08 9.87 16 4 O -0.56 -11.57 16.50 5.26 0.09 -11.48 16 5 N -0.58 -10.46 2.91 -172.74 -0.50 -10.96 16 6 C 0.06 1.14 8.30 59.85 0.50 1.64 16 7 C 0.12 2.30 3.65 -65.66 -0.24 2.06 16 8 H 0.10 1.84 7.04 -51.93 -0.37 1.48 16 9 C -0.15 -2.95 6.48 -24.90 -0.16 -3.12 16 10 C 0.17 4.04 4.32 -3.06 -0.01 4.03 16 11 N -0.60 -14.43 1.86 -169.94 -0.32 -14.75 16 12 C -0.23 -6.08 9.80 -15.06 -0.15 -6.22 16 13 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 14 C 0.00 -0.13 5.49 -17.43 -0.10 -0.22 16 15 N -0.92 -25.66 10.31 55.49 0.57 -25.09 16 16 Si 0.91 21.28 29.55 -169.99 -5.02 16.26 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 C 0.13 2.57 6.45 -2.42 -0.02 2.56 16 21 C -0.09 -1.14 5.91 -100.24 -0.59 -1.73 16 22 C -0.10 -1.31 5.90 -26.85 -0.16 -1.46 16 23 C -0.12 -1.21 6.88 -25.02 -0.17 -1.38 16 24 C -0.12 -1.12 6.94 -24.70 -0.17 -1.29 16 25 C -0.09 -0.89 5.63 -26.34 -0.15 -1.04 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.67 6.99 -51.93 -0.36 0.30 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.81 6.81 -51.93 -0.35 0.45 16 30 H 0.05 0.85 6.93 -51.93 -0.36 0.49 16 31 H 0.13 2.71 4.52 -51.93 -0.23 2.47 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.05 1.27 6.40 -51.93 -0.33 0.93 16 35 H 0.04 1.09 7.50 -51.93 -0.39 0.70 16 36 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.08 1.14 6.80 -51.93 -0.35 0.78 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.07 0.67 7.60 -51.93 -0.39 0.28 16 LS Contribution 352.71 15.07 5.32 5.32 Total: -1.00 -29.58 352.71 -9.19 -38.77 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -7.76 Total: 1.69 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -1.56 Total: 0.24 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: -0.25 Total: -50.80 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.48 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.58 -9.19 -38.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032991817.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.798 kcal (2) G-P(sol) polarization free energy of solvation -29.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds