Wall clock time and date at job start Tue Mar 31 2020 06:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.47104 * 119.99925 * 2 1 4 4 O 1.21615 * 120.00104 * 180.02562 * 3 2 1 5 5 N 1.34778 * 120.00414 * 359.97438 * 3 2 1 6 6 C 1.46492 * 120.00570 * 180.02562 * 5 3 2 7 7 H 1.09007 * 109.36417 * 34.73903 * 6 5 3 8 8 C 1.50870 * 109.37231 * 154.36252 * 6 5 3 9 9 C 1.52572 * 109.36103 * 212.07772 * 8 6 5 10 10 C 1.47087 * 114.32893 * 274.98579 * 9 8 6 11 11 C 1.54861 * 110.32078 * 62.79536 * 10 9 8 12 12 N 1.44575 * 109.60724 * 288.73834 * 11 10 9 13 13 C 1.36942 * 118.64564 * 270.70165 * 12 11 10 14 14 H 1.08001 * 120.00345 * 182.60826 * 13 12 11 15 15 C 1.38814 * 119.99716 * 2.61662 * 13 12 11 16 16 N 1.31619 * 120.00181 * 32.39246 * 15 13 12 17 17 Si 1.86800 * 119.99775 * 212.40126 * 15 13 12 18 18 H 1.48502 * 109.47275 * 94.98932 * 17 15 13 19 19 H 1.48503 * 109.47105 * 214.98924 * 17 15 13 20 20 H 1.48497 * 109.47100 * 334.98754 * 17 15 13 21 21 C 1.47605 * 122.71501 * 90.72380 * 12 11 10 22 22 C 1.32990 * 120.00078 * 180.02562 * 2 1 3 23 23 C 1.51573 * 135.78187 * 359.97438 * 22 2 1 24 24 C 1.53844 * 86.76044 * 205.15633 * 23 22 2 25 25 C 1.51880 * 135.78726 * 179.97438 * 22 2 1 26 26 H 1.08995 * 109.47165 * 270.00364 * 1 2 3 27 27 H 1.09007 * 109.47234 * 30.00088 * 1 2 3 28 28 H 1.08995 * 109.47206 * 149.99371 * 1 2 3 29 29 H 0.97001 * 119.99758 * 0.02562 * 5 3 2 30 30 H 1.09000 * 109.49118 * 332.04479 * 8 6 5 31 31 H 1.08998 * 109.49562 * 92.11008 * 8 6 5 32 32 H 1.09004 * 108.51147 * 153.73095 * 9 8 6 33 33 H 1.09006 * 108.51022 * 36.23954 * 9 8 6 34 34 H 1.09005 * 109.32668 * 302.54235 * 10 9 8 35 35 H 1.08997 * 109.19275 * 182.97478 * 10 9 8 36 36 H 1.09002 * 109.44912 * 168.69449 * 11 10 9 37 37 H 1.09003 * 109.44737 * 48.77837 * 11 10 9 38 38 H 0.97001 * 120.00048 * 179.97438 * 16 15 13 39 39 H 1.08995 * 108.94897 * 197.18624 * 21 12 11 40 40 H 1.08997 * 108.94423 * 78.55662 * 21 12 11 41 41 H 1.08998 * 113.67155 * 90.68739 * 23 22 2 42 42 H 1.09008 * 113.75625 * 319.63020 * 23 22 2 43 43 H 1.08993 * 113.65712 * 89.68246 * 24 23 22 44 44 H 1.08998 * 113.66102 * 220.64002 * 24 23 22 45 45 H 1.08999 * 113.75559 * 40.41422 * 25 22 2 46 46 H 1.08997 * 113.66548 * 269.25931 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 3.4586 1.2740 -0.0005 5 7 1.5687 2.4412 -0.0005 6 6 2.3011 3.7099 -0.0011 7 1 3.2137 3.6001 -0.5871 8 6 1.4400 4.7846 -0.6174 9 6 2.3289 5.7934 -1.3384 10 6 2.8704 6.8517 -0.4723 11 6 3.7883 6.2400 0.6146 12 7 2.9857 5.5240 1.5807 13 6 2.5023 6.2048 2.6661 14 1 1.9359 5.6825 3.4229 15 6 2.7403 7.5665 2.7936 16 7 2.8246 8.3232 1.7200 17 14 2.9411 8.3248 4.4889 18 1 4.3845 8.4005 4.8295 19 1 2.3594 9.6912 4.4921 20 1 2.2389 7.4856 5.4929 21 6 2.6660 4.0893 1.4457 22 6 2.1720 -1.1517 -0.0005 23 6 1.7997 -2.6210 -0.0007 24 6 3.1690 -2.8783 0.6516 25 6 3.6335 -1.5649 -0.0012 26 1 -0.3633 0.0001 1.0276 27 1 -0.3634 0.8900 -0.5139 28 1 -0.3633 -0.8899 -0.5139 29 1 0.5987 2.4412 -0.0005 30 1 0.7498 4.3333 -1.3302 31 1 0.8753 5.2915 0.1650 32 1 1.7478 6.2605 -2.1336 33 1 3.1625 5.2576 -1.7927 34 1 2.0474 7.3818 0.0071 35 1 3.4458 7.5514 -1.0785 36 1 4.3364 7.0368 1.1174 37 1 4.4943 5.5525 0.1486 38 1 2.9905 9.2747 1.8091 39 1 1.8249 3.8513 2.0968 40 1 3.5302 3.5033 1.7581 41 1 1.7034 -3.0480 -0.9990 42 1 0.9552 -2.8602 0.6458 43 1 3.1483 -2.8420 1.7408 44 1 3.6779 -3.7620 0.2665 45 1 4.2629 -0.9536 0.6455 46 1 4.0506 -1.6961 -0.9996 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034203674.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:29 Heat of formation + Delta-G solvation = 27.748769 kcal Electronic energy + Delta-G solvation = -24302.039095 eV Core-core repulsion = 21000.493595 eV Total energy + Delta-G solvation = -3301.545500 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 4.52 seconds Orbital eigenvalues (eV) -39.95201 -38.55287 -37.39033 -34.59016 -33.43240 -32.77859 -31.05659 -29.39557 -26.68949 -26.10967 -25.66598 -24.34062 -23.49523 -22.32934 -20.50595 -19.88085 -19.10855 -17.97734 -16.56339 -16.39551 -15.92723 -15.66568 -15.21359 -14.63936 -14.42114 -13.87102 -13.83667 -13.43252 -13.30554 -13.06638 -12.67282 -12.58015 -12.53502 -12.07897 -11.98257 -11.96620 -11.70553 -11.44517 -11.10443 -11.03700 -10.91979 -10.63985 -10.59249 -10.27701 -10.16174 -9.86981 -9.71297 -9.48511 -9.41486 -9.19758 -8.93530 -8.56088 -8.16183 -6.84606 -5.74643 -2.97619 1.38814 3.39758 3.43938 3.50702 3.53049 3.54935 4.31218 4.36516 4.57485 4.60025 4.93438 4.94421 5.15753 5.30807 5.36992 5.38735 5.47608 5.48781 5.55333 5.60370 5.64152 5.71444 5.77235 5.82692 5.97217 6.08719 6.12133 6.14718 6.23346 6.32059 6.56084 6.57624 6.61887 6.73176 6.85963 6.93247 7.02274 7.16040 7.24573 7.31745 7.72790 7.83274 7.87436 8.21928 8.38607 8.56003 9.31457 9.95098 10.35640 11.26347 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.023139 B = 0.003712 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.763257 B = 7540.642185 C = 8017.705186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.164 4.164 3 C 0.552 3.448 4 O -0.541 6.541 5 N -0.718 5.718 6 C 0.129 3.871 7 H 0.079 0.921 8 C -0.113 4.113 9 C -0.102 4.102 10 C -0.127 4.127 11 C 0.181 3.819 12 N -0.593 5.593 13 C -0.258 4.258 14 H 0.073 0.927 15 C 0.004 3.996 16 N -0.884 5.884 17 Si 0.883 3.117 18 H -0.290 1.290 19 H -0.295 1.295 20 H -0.282 1.282 21 C 0.148 3.852 22 C -0.075 4.075 23 C -0.105 4.105 24 C -0.141 4.141 25 C -0.101 4.101 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.395 0.605 30 H 0.047 0.953 31 H 0.081 0.919 32 H 0.039 0.961 33 H 0.037 0.963 34 H 0.103 0.897 35 H 0.032 0.968 36 H 0.075 0.925 37 H 0.005 0.995 38 H 0.251 0.749 39 H 0.048 0.952 40 H 0.022 0.978 41 H 0.097 0.903 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.940 -17.892 -6.358 19.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.167 4.167 3 C 0.340 3.660 4 O -0.419 6.419 5 N -0.369 5.369 6 C 0.024 3.976 7 H 0.097 0.903 8 C -0.151 4.151 9 C -0.141 4.141 10 C -0.167 4.167 11 C 0.055 3.945 12 N -0.315 5.315 13 C -0.386 4.386 14 H 0.091 0.909 15 C -0.194 4.194 16 N -0.529 5.529 17 Si 0.713 3.287 18 H -0.217 1.217 19 H -0.222 1.222 20 H -0.207 1.207 21 C 0.020 3.980 22 C -0.077 4.077 23 C -0.142 4.142 24 C -0.179 4.179 25 C -0.138 4.138 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.230 0.770 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.121 0.879 35 H 0.051 0.949 36 H 0.094 0.906 37 H 0.023 0.977 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.040 0.960 41 H 0.115 0.885 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.106 0.894 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.031 -17.712 -6.378 19.253 hybrid contribution -0.493 0.555 0.826 1.111 sum -4.525 -17.157 -5.552 18.592 Atomic orbital electron populations 1.20671 0.90742 1.02701 1.02447 1.20593 0.95775 0.91726 1.08636 1.18220 0.87330 0.83825 0.76646 1.90768 1.13477 1.87629 1.50060 1.46206 1.10024 1.05915 1.74745 1.21592 0.95243 0.81204 0.99569 0.90265 1.21260 0.98075 0.96041 0.99755 1.20438 0.97788 0.97581 0.98248 1.21415 1.02732 0.95792 0.96714 1.20713 0.91119 0.93455 0.89234 1.43998 1.58221 1.03922 1.25361 1.19314 1.30919 0.91200 0.97187 0.90924 1.24611 1.02476 0.95646 0.96672 1.70353 1.51636 1.04485 1.26428 0.86548 0.78131 0.78178 0.85890 1.21730 1.22243 1.20734 1.21462 0.97866 0.85926 0.92723 1.23383 0.97864 0.93441 0.93015 1.22315 0.98381 0.91935 1.01593 1.22821 0.96380 0.98142 1.00541 1.22306 0.94015 0.95675 1.01780 0.91096 0.91510 0.91427 0.76982 0.93392 0.90060 0.94273 0.94448 0.87874 0.94881 0.90635 0.97679 0.93895 0.93317 0.95987 0.88490 0.90529 0.89873 0.90793 0.89377 0.88737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 9.56 36.01 0.34 -0.64 16 2 C -0.16 -2.06 6.00 -102.85 -0.62 -2.68 16 3 C 0.55 8.96 7.72 -12.66 -0.10 8.87 16 4 O -0.54 -10.73 14.77 5.26 0.08 -10.65 16 5 N -0.72 -11.05 4.91 -55.55 -0.27 -11.32 16 6 C 0.13 2.40 2.28 -68.51 -0.16 2.24 16 7 H 0.08 1.63 6.73 -51.92 -0.35 1.28 16 8 C -0.11 -2.04 5.07 -28.02 -0.14 -2.18 16 9 C -0.10 -1.95 5.15 -29.79 -0.15 -2.11 16 10 C -0.13 -2.85 4.83 -28.59 -0.14 -2.99 16 11 C 0.18 4.41 4.96 -4.09 -0.02 4.39 16 12 N -0.59 -14.74 2.30 -172.09 -0.39 -15.13 16 13 C -0.26 -6.96 9.55 -15.06 -0.14 -7.11 16 14 H 0.07 1.95 7.85 -52.49 -0.41 1.54 16 15 C 0.00 0.10 4.71 -17.43 -0.08 0.02 16 16 N -0.88 -24.25 8.44 55.49 0.47 -23.78 16 17 Si 0.88 21.52 29.66 -169.99 -5.04 16.48 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 C 0.15 3.21 5.83 -2.94 -0.02 3.20 16 22 C -0.08 -0.87 6.56 -100.24 -0.66 -1.53 16 23 C -0.11 -0.86 7.76 -27.01 -0.21 -1.07 16 24 C -0.14 -1.20 8.10 -25.93 -0.21 -1.41 16 25 C -0.10 -1.15 7.07 -26.86 -0.19 -1.34 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.55 6.70 -51.92 -0.35 0.20 16 28 H 0.07 0.51 7.88 -51.93 -0.41 0.10 16 29 H 0.40 4.96 6.66 -40.82 -0.27 4.69 16 30 H 0.05 0.73 7.95 -51.93 -0.41 0.32 16 31 H 0.08 1.66 7.48 -51.93 -0.39 1.27 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.04 0.70 7.36 -51.93 -0.38 0.31 16 34 H 0.10 2.65 6.33 -51.93 -0.33 2.33 16 35 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 2.05 6.00 -51.93 -0.31 1.74 16 37 H 0.00 0.12 8.07 -51.93 -0.42 -0.30 16 38 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 39 H 0.05 1.04 7.76 -51.93 -0.40 0.64 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.09 1.21 7.49 -51.93 -0.39 0.82 16 46 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 352.39 15.07 5.31 5.31 Total: -1.00 -29.90 352.39 -10.11 -40.01 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -7.76 Total: 3.41 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -2.49 Total: -4.33 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -0.20 Total: -50.23 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.08 Total: -10.65 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.04 Total: 16.48 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.90 -10.11 -40.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034203674.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.759 kcal (2) G-P(sol) polarization free energy of solvation -29.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.52 seconds