Wall clock time and date at job start Tue Mar 31 2020 06:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.47096 * 119.99820 * 2 1 4 4 O 1.21610 * 120.00108 * 180.02562 * 3 2 1 5 5 N 1.34780 * 120.00108 * 359.97438 * 3 2 1 6 6 C 1.46496 * 119.99962 * 180.02562 * 5 3 2 7 7 H 1.08999 * 109.47191 * 35.00695 * 6 5 3 8 8 C 1.53000 * 109.47041 * 155.00297 * 6 5 3 9 9 C 1.52996 * 109.47258 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47421 * 300.00426 * 9 8 6 11 11 H 1.09004 * 109.46658 * 299.99647 * 10 9 8 12 12 N 1.46506 * 109.47286 * 180.02562 * 10 9 8 13 13 C 1.36931 * 119.99939 * 154.99859 * 12 10 9 14 14 H 1.08000 * 120.00644 * 359.97438 * 13 12 10 15 15 C 1.38815 * 119.99715 * 179.97438 * 13 12 10 16 16 N 1.31611 * 120.00107 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99746 * 179.72150 * 15 13 12 18 18 H 1.48500 * 109.46781 * 90.00854 * 17 15 13 19 19 H 1.48496 * 109.47225 * 210.00413 * 17 15 13 20 20 H 1.48494 * 109.47296 * 330.00424 * 17 15 13 21 21 C 1.53000 * 109.47253 * 59.99571 * 10 9 8 22 22 C 1.52996 * 109.47460 * 275.00614 * 6 5 3 23 23 C 1.32992 * 119.99841 * 179.97438 * 2 1 3 24 24 C 1.51406 * 136.31069 * 179.63035 * 23 2 1 25 25 C 1.53380 * 87.51561 * 206.05594 * 24 23 2 26 26 C 1.51407 * 136.31902 * 0.02562 * 23 2 1 27 27 H 1.08994 * 109.47167 * 90.00374 * 1 2 3 28 28 H 1.09007 * 109.46583 * 210.00461 * 1 2 3 29 29 H 1.08997 * 109.46887 * 329.99810 * 1 2 3 30 30 H 0.97003 * 120.00152 * 0.02562 * 5 3 2 31 31 H 1.09004 * 109.47226 * 60.00020 * 8 6 5 32 32 H 1.08998 * 109.47154 * 300.00366 * 8 6 5 33 33 H 1.09009 * 109.47481 * 179.97438 * 9 8 6 34 34 H 1.08999 * 109.47012 * 60.00375 * 9 8 6 35 35 H 0.97000 * 119.99307 * 334.99653 * 12 10 9 36 36 H 0.97000 * 120.00330 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.46803 * 60.00283 * 21 10 9 38 38 H 1.08998 * 109.47154 * 180.02562 * 21 10 9 39 39 H 1.09004 * 109.46658 * 299.99889 * 22 6 5 40 40 H 1.08996 * 109.47422 * 59.99823 * 22 6 5 41 41 H 1.08999 * 113.56560 * 320.63419 * 24 23 2 42 42 H 1.09000 * 113.56560 * 91.37593 * 24 23 2 43 43 H 1.09006 * 113.96979 * 220.29063 * 25 24 23 44 44 H 1.09006 * 113.71399 * 88.80837 * 25 24 23 45 45 H 1.08998 * 113.55840 * 268.62298 * 26 23 2 46 46 H 1.08996 * 113.56112 * 39.28847 * 26 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 3.4586 1.2740 -0.0005 5 7 1.5686 2.4411 -0.0005 6 6 2.3010 3.7098 -0.0011 7 1 3.2117 3.6034 -0.5906 8 6 1.4238 4.8049 -0.6111 9 6 2.1885 6.1301 -0.6112 10 6 2.5520 6.5092 0.8258 11 1 1.6411 6.6154 1.4150 12 7 3.2837 7.7784 0.8258 13 6 3.2742 8.5742 1.9401 14 1 2.7269 8.2665 2.8189 15 6 3.9679 9.7766 1.9402 16 7 4.6344 10.1519 0.8692 17 14 3.9485 10.8659 3.4576 18 1 5.0809 10.4983 4.3453 19 1 4.0816 12.2872 3.0484 20 1 2.6678 10.6782 4.1854 21 6 3.4293 5.4141 1.4358 22 6 2.6651 4.0893 1.4357 23 6 2.1720 -1.1518 0.0005 24 6 3.6251 -1.5770 -0.0060 25 6 3.1709 -2.8820 -0.6718 26 6 1.8138 -2.6229 0.0007 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5140 29 1 -0.3633 0.8900 0.5139 30 1 0.5985 2.4411 -0.0005 31 1 0.5131 4.9114 -0.0217 32 1 1.1645 4.5346 -1.6347 33 1 1.5637 6.9102 -1.0462 34 1 3.0993 6.0239 -1.2004 35 1 3.7749 8.0550 0.0364 36 1 5.1189 10.9922 0.8691 37 1 4.3401 5.3080 0.8466 38 1 3.6879 5.6840 2.4597 39 1 1.7544 4.1958 2.0251 40 1 3.2900 3.3092 1.8703 41 1 4.2567 -0.9605 -0.6455 42 1 4.0421 -1.7188 0.9910 43 1 3.6836 -3.7699 -0.3016 44 1 3.1395 -2.8311 -1.7602 45 1 1.7337 -3.0516 0.9996 46 1 0.9597 -2.8634 -0.6322 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034646841.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:46 Heat of formation + Delta-G solvation = -8.342864 kcal Electronic energy + Delta-G solvation = -23304.231257 eV Core-core repulsion = 20001.120706 eV Total energy + Delta-G solvation = -3303.110551 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.23764 -38.87457 -37.67727 -34.81215 -33.67808 -32.58733 -30.48716 -30.35558 -27.35240 -26.84237 -25.79079 -23.96713 -23.00941 -22.26237 -21.19619 -20.36341 -19.55491 -18.28433 -17.01383 -16.60793 -16.25354 -15.81783 -15.24219 -14.82271 -14.64040 -14.14799 -13.83510 -13.64283 -13.54919 -13.31671 -12.92514 -12.72271 -12.71957 -12.54703 -12.18955 -12.00547 -11.85621 -11.76602 -11.38530 -11.24649 -10.99109 -10.79656 -10.75277 -10.70342 -10.60632 -10.15289 -10.06094 -9.72330 -9.70502 -9.51219 -9.13724 -8.85819 -8.78530 -6.90827 -5.72605 -3.00858 1.18822 3.14969 3.24970 3.45897 3.50866 3.52451 4.12002 4.23279 4.44619 4.62120 4.72700 4.79329 4.92316 5.02030 5.09711 5.24190 5.29123 5.33698 5.35137 5.41629 5.49405 5.55844 5.60166 5.66631 5.72735 5.77396 5.79832 5.88571 5.92693 5.94953 6.03126 6.09201 6.28563 6.32709 6.35814 6.45104 6.53761 6.61812 6.72353 6.77565 7.03278 7.19302 7.57412 7.73816 8.28710 8.46354 9.57189 10.16232 10.50847 11.50253 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.035812 B = 0.002636 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.665839 B =10620.227377 C =10825.763904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.167 4.167 3 C 0.554 3.446 4 O -0.539 6.539 5 N -0.723 5.723 6 C 0.146 3.854 7 H 0.087 0.913 8 C -0.119 4.119 9 C -0.120 4.120 10 C 0.177 3.823 11 H 0.046 0.954 12 N -0.726 5.726 13 C -0.236 4.236 14 H 0.070 0.930 15 C -0.015 4.015 16 N -0.934 5.934 17 Si 0.905 3.095 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.282 1.282 21 C -0.132 4.132 22 C -0.123 4.123 23 C -0.072 4.072 24 C -0.103 4.103 25 C -0.142 4.142 26 C -0.105 4.105 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.397 0.603 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.383 0.617 36 H 0.254 0.746 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.099 0.901 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.032 -25.561 -3.985 27.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.170 4.170 3 C 0.343 3.657 4 O -0.417 6.417 5 N -0.373 5.373 6 C 0.042 3.958 7 H 0.105 0.895 8 C -0.157 4.157 9 C -0.159 4.159 10 C 0.068 3.932 11 H 0.064 0.936 12 N -0.366 5.366 13 C -0.367 4.367 14 H 0.088 0.912 15 C -0.211 4.211 16 N -0.582 5.582 17 Si 0.737 3.263 18 H -0.218 1.218 19 H -0.218 1.218 20 H -0.208 1.208 21 C -0.173 4.173 22 C -0.162 4.162 23 C -0.074 4.074 24 C -0.139 4.139 25 C -0.180 4.180 26 C -0.142 4.142 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.231 0.769 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.217 0.783 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.104 0.896 42 H 0.114 0.886 43 H 0.095 0.905 44 H 0.102 0.898 45 H 0.117 0.883 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.198 -25.424 -3.834 27.307 hybrid contribution -0.259 0.772 0.638 1.034 sum -9.456 -24.652 -3.196 26.597 Atomic orbital electron populations 1.20668 0.90615 1.02886 1.02361 1.20505 0.95794 0.91505 1.09195 1.18221 0.87287 0.83812 0.76419 1.90783 1.13487 1.87649 1.49800 1.46101 1.10157 1.05833 1.75250 1.21092 0.95684 0.81400 0.97627 0.89511 1.21747 0.98678 0.94958 1.00332 1.21749 1.00022 0.95094 0.99045 1.20236 0.93840 0.86351 0.92816 0.93639 1.42434 1.59783 1.18383 1.15992 1.19242 1.25492 0.99185 0.92778 0.91249 1.24738 1.00575 0.98334 0.97478 1.69658 1.37239 1.23543 1.27797 0.86212 0.77584 0.80088 0.82454 1.21780 1.21827 1.20821 1.22209 0.99341 0.93579 1.02156 1.21880 1.00449 0.98476 0.95413 1.23232 0.98152 0.93632 0.92382 1.22170 0.94073 0.95790 1.01910 1.22714 0.96605 0.98265 1.00376 1.22284 0.98499 0.91718 1.01714 0.91170 0.91300 0.91479 0.76868 0.91628 0.91924 0.91388 0.91987 0.78317 0.93571 0.92518 0.91861 0.92403 0.92409 0.89557 0.88556 0.90496 0.89815 0.88324 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 9.57 36.01 0.34 -0.40 16 2 C -0.17 -1.73 6.00 -102.85 -0.62 -2.34 16 3 C 0.55 7.44 7.71 -12.67 -0.10 7.34 16 4 O -0.54 -9.25 14.81 5.27 0.08 -9.17 16 5 N -0.72 -8.46 5.02 -54.99 -0.28 -8.74 16 6 C 0.15 2.02 2.45 -67.93 -0.17 1.86 16 7 H 0.09 1.40 7.58 -51.93 -0.39 1.00 16 8 C -0.12 -1.52 5.39 -26.73 -0.14 -1.66 16 9 C -0.12 -1.96 5.39 -26.73 -0.14 -2.11 16 10 C 0.18 3.52 2.77 -67.93 -0.19 3.34 16 11 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 12 N -0.73 -18.38 5.12 -53.42 -0.27 -18.65 16 13 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 14 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 15 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 16 N -0.93 -28.57 13.06 55.49 0.72 -27.85 16 17 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 19 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 C -0.13 -2.47 5.50 -26.76 -0.15 -2.62 16 22 C -0.12 -1.90 5.49 -26.76 -0.15 -2.05 16 23 C -0.07 -0.71 6.60 -100.48 -0.66 -1.37 16 24 C -0.10 -1.00 6.99 -27.56 -0.19 -1.19 16 25 C -0.14 -0.99 8.17 -26.20 -0.21 -1.20 16 26 C -0.11 -0.70 7.71 -27.41 -0.21 -0.91 16 27 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.40 7.91 -51.93 -0.41 -0.01 16 29 H 0.07 0.40 6.70 -51.93 -0.35 0.05 16 30 H 0.40 3.49 6.70 -40.82 -0.27 3.22 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.13 8.14 -51.92 -0.42 0.70 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.38 10.33 7.80 -40.82 -0.32 10.01 16 36 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.09 1.02 7.49 -51.93 -0.39 0.63 16 42 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 366.45 15.07 5.52 5.52 Total: -1.00 -32.74 366.45 -10.10 -42.84 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -8.02 Total: 9.01 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -2.83 Total: -10.62 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.17 Total: -55.23 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.08 Total: -9.17 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.74 -10.10 -42.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034646841.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.495 kcal (2) G-P(sol) polarization free energy of solvation -32.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds