Wall clock time and date at job start Tue Mar 31 2020 08:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32991 * 120.00336 * 2 1 4 4 C 1.50703 * 120.00393 * 180.02562 * 3 2 1 5 5 C 1.47100 * 119.99722 * 359.97438 * 3 2 1 6 6 O 1.21623 * 120.00107 * 307.72247 * 5 3 2 7 7 N 1.34776 * 120.00170 * 127.72183 * 5 3 2 8 8 C 1.46935 * 120.55761 * 190.68824 * 7 5 3 9 9 C 1.53344 * 108.68481 * 125.62397 * 8 7 5 10 10 C 1.52105 * 109.43967 * 53.31252 * 9 8 7 11 11 C 1.54389 * 110.51140 * 64.08463 * 10 9 8 12 12 C 1.54461 * 102.86921 * 83.33374 * 11 10 9 13 13 N 1.47083 * 107.29486 * 21.50469 * 12 11 10 14 14 C 1.36939 * 125.62526 * 180.96785 * 13 12 11 15 15 H 1.07993 * 119.99987 * 173.44107 * 14 13 12 16 16 C 1.38814 * 119.99773 * 353.43849 * 14 13 12 17 17 N 1.31619 * 119.99847 * 157.75272 * 16 14 13 18 18 Si 1.86801 * 120.00239 * 337.74533 * 16 14 13 19 19 H 1.48495 * 109.47186 * 184.18824 * 18 16 14 20 20 H 1.48493 * 109.47153 * 304.19106 * 18 16 14 21 21 H 1.48504 * 109.46797 * 64.19195 * 18 16 14 22 22 C 1.47571 * 108.74698 * 1.23295 * 13 12 11 23 23 C 1.52107 * 111.59895 * 300.68780 * 10 9 8 24 24 C 1.46932 * 120.55124 * 10.66565 * 7 5 3 25 25 H 1.09002 * 109.47199 * 60.00003 * 1 2 3 26 26 H 1.09001 * 109.47184 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47322 * 299.99977 * 1 2 3 28 28 H 1.08008 * 120.00074 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47097 * 292.82523 * 4 3 2 30 30 H 1.08998 * 109.46497 * 52.82486 * 4 3 2 31 31 H 1.08997 * 109.47254 * 172.81843 * 4 3 2 32 32 H 1.09003 * 109.59983 * 5.87298 * 8 7 5 33 33 H 1.08999 * 109.73658 * 245.46903 * 8 7 5 34 34 H 1.08991 * 109.48016 * 293.31834 * 9 8 7 35 35 H 1.09004 * 109.47968 * 173.29848 * 9 8 7 36 36 H 1.08997 * 110.73528 * 324.98883 * 11 10 9 37 37 H 1.09004 * 110.73095 * 201.67791 * 11 10 9 38 38 H 1.09003 * 109.87364 * 262.07974 * 12 11 10 39 39 H 1.09000 * 109.87639 * 140.93196 * 12 11 10 40 40 H 0.96996 * 119.99959 * 5.00700 * 17 16 14 41 41 H 1.08997 * 110.37370 * 95.25598 * 22 13 12 42 42 H 1.08995 * 110.37491 * 217.61308 * 22 13 12 43 43 H 1.09005 * 109.47634 * 179.29105 * 23 10 9 44 44 H 1.08997 * 109.47594 * 299.31330 * 23 10 9 45 45 H 1.09000 * 109.59960 * 354.13211 * 24 7 5 46 46 H 1.09003 * 109.59471 * 114.60486 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6790 1.1517 -0.0006 5 6 1.4365 2.4256 -0.0006 6 8 0.5746 2.6299 -0.8341 7 7 1.7176 3.3665 0.9226 8 6 0.8450 4.5374 1.0855 9 6 0.4126 4.6273 2.5539 10 6 1.6441 4.6056 3.4465 11 6 2.5179 5.8530 3.1932 12 6 1.8452 6.9289 4.0739 13 7 1.0698 6.2260 5.1073 14 6 0.3093 6.8222 6.0775 15 1 -0.3081 6.2189 6.7265 16 6 0.3321 8.2021 6.2269 17 7 -0.6712 8.8169 6.8167 18 14 1.7868 9.1866 5.5912 19 1 1.6176 10.6147 5.9610 20 1 3.0394 8.6642 6.1940 21 1 1.8598 9.0633 4.1131 22 6 1.2517 4.7723 4.9300 23 6 2.4575 3.3358 3.2476 24 6 2.9016 3.2382 1.7832 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 2.0470 -0.9354 0.0004 29 1 4.0427 0.7529 0.9463 30 1 4.0419 0.5309 -0.8197 31 1 4.0423 2.1713 -0.1290 32 1 -0.0348 4.4289 0.4513 33 1 1.3867 5.4416 0.8077 34 1 -0.2274 3.7792 2.7970 35 1 -0.1366 5.5550 2.7150 36 1 2.4860 6.1395 2.1420 37 1 3.5442 5.6770 3.5153 38 1 1.1810 7.5433 3.4659 39 1 2.6060 7.5535 4.5420 40 1 -1.3916 8.3009 7.2112 41 1 2.0479 4.4075 5.5790 42 1 0.3204 4.2452 5.1372 43 1 3.3357 3.3620 3.8927 44 1 1.8463 2.4694 3.5005 45 1 3.3775 2.2732 1.6089 46 1 3.6045 4.0408 1.5599 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035173257.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:11 Heat of formation + Delta-G solvation = 16.750749 kcal Electronic energy + Delta-G solvation = -24882.008752 eV Core-core repulsion = 21579.986342 eV Total energy + Delta-G solvation = -3302.022410 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.70296 -38.98904 -36.06724 -35.44274 -33.16734 -31.48021 -31.27491 -30.07771 -29.04175 -27.34522 -25.24258 -23.87873 -23.60225 -22.87086 -21.64410 -20.34574 -19.09755 -18.01448 -17.13370 -16.52479 -15.84319 -15.54033 -15.34257 -15.09291 -14.55924 -14.22706 -13.97109 -13.68203 -13.61549 -13.35835 -13.15191 -13.01993 -12.82563 -12.69499 -12.30446 -12.19907 -12.02342 -11.80893 -11.72230 -11.37164 -11.26217 -11.12856 -10.88315 -10.41913 -10.31174 -10.20915 -9.98716 -9.69602 -9.47384 -9.18399 -8.90063 -8.59320 -8.45655 -7.06078 -6.29150 -3.15826 1.38773 2.73037 3.05089 3.42943 3.51597 3.72281 4.34564 4.57906 4.63186 4.70880 4.77249 4.90180 4.95370 5.05070 5.09339 5.18270 5.21228 5.29275 5.32951 5.38485 5.47136 5.53296 5.56914 5.61228 5.66120 5.71995 5.77122 5.81196 5.86867 5.95286 5.99843 6.05403 6.21737 6.28356 6.31226 6.34923 6.36546 6.45357 6.57090 6.68028 6.79033 6.82412 7.37301 7.70386 8.10113 8.35838 9.07495 9.61424 10.27956 11.20906 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.030663 B = 0.003990 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.932095 B = 7016.342694 C = 7190.652383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.092 4.092 3 C -0.183 4.183 4 C -0.113 4.113 5 C 0.558 3.442 6 O -0.543 6.543 7 N -0.602 5.602 8 C 0.111 3.889 9 C -0.111 4.111 10 C -0.071 4.071 11 C -0.124 4.124 12 C 0.120 3.880 13 N -0.610 5.610 14 C -0.325 4.325 15 H 0.076 0.924 16 C -0.023 4.023 17 N -0.926 5.926 18 Si 1.065 2.935 19 H -0.302 1.302 20 H -0.299 1.299 21 H -0.280 1.280 22 C 0.147 3.853 23 C -0.117 4.117 24 C 0.095 3.905 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.124 0.876 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.043 0.957 39 H 0.023 0.977 40 H 0.261 0.739 41 H 0.022 0.978 42 H 0.042 0.958 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.097 0.903 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.647 -17.182 -13.481 23.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 C -0.186 4.186 4 C -0.170 4.170 5 C 0.347 3.653 6 O -0.421 6.421 7 N -0.335 5.335 8 C -0.010 4.010 9 C -0.149 4.149 10 C -0.072 4.072 11 C -0.162 4.162 12 C -0.005 4.005 13 N -0.338 5.338 14 C -0.452 4.452 15 H 0.094 0.906 16 C -0.223 4.223 17 N -0.567 5.567 18 Si 0.899 3.101 19 H -0.230 1.230 20 H -0.228 1.228 21 H -0.208 1.208 22 C 0.021 3.979 23 C -0.156 4.156 24 C -0.028 4.028 25 H 0.103 0.897 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.141 0.859 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.040 0.960 40 H 0.071 0.929 41 H 0.039 0.961 42 H 0.060 0.940 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.115 0.885 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.690 -15.461 -14.028 23.016 hybrid contribution -0.398 -1.555 0.549 1.696 sum 9.291 -17.016 -13.480 23.613 Atomic orbital electron populations 1.21010 0.92408 1.02347 1.03565 1.23324 0.96709 0.96554 0.94577 1.21431 0.96562 0.93287 1.07312 1.20913 0.90606 1.03086 1.02350 1.18501 0.82644 0.83525 0.80637 1.90768 1.34271 1.79827 1.37236 1.48081 1.26837 1.22698 1.35843 1.21741 0.94688 0.87093 0.97513 1.21638 0.97184 1.03415 0.92644 1.21098 0.95097 0.93963 0.97059 1.22678 0.98471 0.95407 0.99615 1.21940 0.93725 0.94260 0.90533 1.44883 1.56206 0.99959 1.32740 1.20093 1.20312 0.92418 1.12409 0.90605 1.25764 1.02181 0.93545 1.00796 1.70935 1.08568 1.37020 1.40222 0.83940 0.75232 0.74953 0.75967 1.23024 1.22809 1.20769 1.21534 0.97937 0.86934 0.91507 1.21740 1.00348 0.98067 0.95425 1.22214 0.87134 1.03216 0.90219 0.89668 0.91942 0.91520 0.85857 0.90610 0.91160 0.91342 0.89323 0.91238 0.91971 0.89476 0.91355 0.91607 0.93941 0.95971 0.92907 0.96061 0.93960 0.90539 0.91586 0.88540 0.91132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.96 36.00 0.32 -1.02 16 2 C -0.09 -0.83 9.99 -36.13 -0.36 -1.19 16 3 C -0.18 -1.84 5.18 -102.85 -0.53 -2.37 16 4 C -0.11 -0.79 8.11 36.01 0.29 -0.50 16 5 C 0.56 7.41 6.46 -12.67 -0.08 7.32 16 6 O -0.54 -8.99 14.81 5.26 0.08 -8.91 16 7 N -0.60 -7.46 2.96 -173.96 -0.51 -7.98 16 8 C 0.11 1.52 6.09 -3.63 -0.02 1.50 16 9 C -0.11 -1.68 4.87 -27.01 -0.13 -1.81 16 10 C -0.07 -1.07 0.55 -153.98 -0.08 -1.16 16 11 C -0.12 -1.96 4.92 -25.24 -0.12 -2.08 16 12 C 0.12 2.56 4.17 -2.96 -0.01 2.55 16 13 N -0.61 -14.70 3.32 -170.17 -0.57 -15.27 16 14 C -0.33 -9.31 10.50 -15.06 -0.16 -9.47 16 15 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 16 C -0.02 -0.68 5.47 -17.43 -0.10 -0.78 16 17 N -0.93 -29.30 13.70 55.49 0.76 -28.54 16 18 Si 1.07 26.81 24.76 -169.99 -4.21 22.60 16 19 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 20 H -0.30 -7.33 7.10 56.52 0.40 -6.92 16 21 H -0.28 -6.40 5.13 56.52 0.29 -6.11 16 22 C 0.15 2.85 6.16 -2.75 -0.02 2.83 16 23 C -0.12 -1.36 4.84 -27.01 -0.13 -1.49 16 24 C 0.09 0.95 5.20 -3.63 -0.02 0.93 16 25 H 0.08 1.00 6.98 -51.93 -0.36 0.64 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 28 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 29 H 0.08 0.41 7.41 -51.93 -0.38 0.02 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.49 6.90 -51.93 -0.36 0.13 16 32 H 0.09 1.29 7.08 -51.93 -0.37 0.92 16 33 H 0.07 0.92 6.56 -51.93 -0.34 0.58 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.09 1.54 7.82 -51.93 -0.41 1.13 16 36 H 0.07 0.96 6.18 -51.93 -0.32 0.64 16 37 H 0.07 0.94 7.98 -51.93 -0.41 0.53 16 38 H 0.04 0.96 6.92 -51.93 -0.36 0.60 16 39 H 0.02 0.51 4.14 -51.93 -0.22 0.30 16 40 H 0.26 8.16 8.73 -40.82 -0.36 7.81 16 41 H 0.02 0.41 8.00 -51.93 -0.42 0.00 16 42 H 0.04 0.84 8.03 -51.93 -0.42 0.43 16 43 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.10 0.77 3.69 -51.93 -0.19 0.58 16 46 H 0.07 0.67 7.62 -51.93 -0.40 0.28 16 LS Contribution 339.25 15.07 5.11 5.11 Total: -1.00 -33.63 339.25 -8.08 -41.72 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -7.59 Total: -2.00 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -1.16 Total: -6.73 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.32 Total: -51.79 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.08 Total: -8.91 kcal Atomic # 14 Polarization: 26.81 SS G_CDS: -4.21 Total: 22.60 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.63 -8.08 -41.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035173257.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.468 kcal (2) G-P(sol) polarization free energy of solvation -33.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds