Wall clock time and date at job start Tue Mar 31 2020 06:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47161 * 2 1 4 4 C 1.50700 * 115.55189 * 55.00918 * 3 2 1 5 5 O 1.21278 * 119.99837 * 249.33538 * 4 3 2 6 6 N 1.34776 * 120.00072 * 69.33127 * 4 3 2 7 7 C 1.46886 * 120.46320 * 356.57096 * 6 4 3 8 8 C 1.52860 * 109.01793 * 235.48585 * 7 6 4 9 9 C 1.52671 * 109.17596 * 307.82198 * 8 7 6 10 10 C 1.53485 * 113.62716 * 188.99476 * 9 8 7 11 11 N 1.47669 * 85.98593 * 137.70511 * 10 9 8 12 12 C 1.36940 * 134.45164 * 155.71996 * 11 10 9 13 13 H 1.07997 * 119.99793 * 179.97438 * 12 11 10 14 14 C 1.38811 * 120.00089 * 359.95135 * 12 11 10 15 15 N 1.31620 * 119.99900 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00118 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46737 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46913 * 119.99447 * 16 14 12 19 19 H 1.48494 * 109.47312 * 239.99879 * 16 14 12 20 20 C 1.47666 * 91.08990 * 335.68228 * 11 10 9 21 21 C 1.52677 * 113.18778 * 57.45809 * 9 8 7 22 22 C 1.46885 * 120.46553 * 176.84982 * 6 4 3 23 23 C 1.53008 * 117.49890 * 269.33531 * 3 2 1 24 24 C 1.52997 * 117.49818 * 200.67762 * 3 2 1 25 25 H 1.09002 * 109.46786 * 47.72041 * 1 2 3 26 26 H 1.09005 * 109.46643 * 287.72436 * 1 2 3 27 27 H 1.08995 * 109.47116 * 167.72170 * 1 2 3 28 28 H 1.08997 * 109.47040 * 120.00506 * 2 1 3 29 29 H 1.09001 * 109.47131 * 239.99933 * 2 1 3 30 30 H 1.08995 * 109.59132 * 355.31370 * 7 6 4 31 31 H 1.09002 * 109.58512 * 115.74605 * 7 6 4 32 32 H 1.09001 * 109.61010 * 187.84516 * 8 7 6 33 33 H 1.08997 * 109.44993 * 67.69779 * 8 7 6 34 34 H 1.09002 * 113.78986 * 251.97576 * 10 9 8 35 35 H 1.09006 * 113.78419 * 23.43838 * 10 9 8 36 36 H 0.97004 * 119.99834 * 180.02562 * 15 14 12 37 37 H 1.08995 * 113.79031 * 270.04808 * 20 11 10 38 38 H 1.09002 * 113.78607 * 138.58181 * 20 11 10 39 39 H 1.08999 * 109.53181 * 182.51902 * 21 9 8 40 40 H 1.09001 * 109.58865 * 62.33620 * 21 9 8 41 41 H 1.09001 * 109.58386 * 244.25836 * 22 6 4 42 42 H 1.09001 * 109.58387 * 4.53997 * 22 6 4 43 43 H 1.08997 * 117.49493 * 0.02562 * 23 3 2 44 44 H 1.09003 * 117.49291 * 145.02269 * 23 3 2 45 45 H 1.09005 * 117.50020 * 214.98045 * 24 3 2 46 46 H 1.09001 * 117.50151 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5216 2.3152 1.1138 5 8 0.7519 3.2195 0.8675 6 7 1.9133 2.0908 2.3837 7 6 2.7854 0.9530 2.7040 8 6 2.1132 0.0968 3.7772 9 6 1.7113 0.9874 4.9503 10 6 1.2254 0.2052 6.1782 11 7 2.0247 1.1591 6.9730 12 6 1.9760 1.6069 8.2662 13 1 2.6989 2.3295 8.6150 14 6 0.9973 1.1324 9.1287 15 7 0.1158 0.2525 8.7033 16 14 0.9305 1.7438 10.8926 17 1 2.0234 2.7235 11.1185 18 1 -0.3793 2.3984 11.1402 19 1 1.0939 0.5963 11.8208 20 6 2.8980 1.4358 5.8149 21 6 0.7834 2.1307 4.5469 22 6 1.4693 2.9770 3.4677 23 6 2.2904 2.1033 -1.3571 24 6 3.4726 1.6853 -0.4792 25 1 -0.3633 0.6914 -0.7604 26 1 -0.3633 0.3129 0.9790 27 1 -0.3633 -1.0041 -0.2185 28 1 1.8933 -0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 2.9471 0.3531 1.8085 31 1 3.7412 1.3194 3.0786 32 1 2.8077 -0.6691 4.1223 33 1 1.2254 -0.3779 3.3593 34 1 0.1518 0.2803 6.3508 35 1 1.5941 -0.8198 6.2207 36 1 -0.5684 -0.0788 9.3059 37 1 3.7636 0.7767 5.7495 38 1 3.1535 2.4891 5.6987 39 1 0.5711 2.7520 5.4169 40 1 -0.1482 1.7239 4.1536 41 1 2.3305 3.4888 3.8972 42 1 0.7663 3.7114 3.0745 43 1 2.0913 1.5105 -2.2498 44 1 2.0804 3.1694 -1.4441 45 1 4.0400 2.4765 0.0109 46 1 4.0519 0.8173 -0.7941 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035784820.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:58 Heat of formation + Delta-G solvation = 40.566087 kcal Electronic energy + Delta-G solvation = -24850.816881 eV Core-core repulsion = 21549.827182 eV Total energy + Delta-G solvation = -3300.989700 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -40.68228 -39.04209 -36.98172 -35.70405 -32.46525 -32.15938 -30.96936 -30.39329 -26.93529 -25.19734 -24.81657 -23.81899 -23.11857 -22.63052 -21.91026 -20.81741 -19.03332 -17.33402 -16.70511 -16.43958 -16.08330 -15.61722 -14.91957 -14.72480 -14.67246 -14.24000 -14.00377 -13.76022 -13.56817 -13.22039 -12.90423 -12.64733 -12.36095 -12.17694 -12.07651 -11.79369 -11.72337 -11.61748 -11.30867 -11.06034 -11.02974 -10.86106 -10.80057 -10.56322 -10.32620 -10.16103 -10.12522 -9.69390 -9.67273 -9.43663 -9.31503 -8.77281 -8.38061 -6.83740 -5.74528 -3.06107 2.65212 3.05281 3.39494 3.44995 3.47387 3.52347 4.32784 4.47024 4.48385 4.62852 4.72448 4.95699 5.08380 5.16122 5.21105 5.27015 5.33588 5.36762 5.39072 5.44049 5.53973 5.55490 5.64879 5.69746 5.77305 5.81712 5.90475 5.91839 5.94635 5.96792 6.02919 6.15621 6.24344 6.30339 6.33717 6.47899 6.64981 6.67338 6.83461 6.90794 7.26002 7.40119 7.55416 7.61148 8.01256 8.28577 9.07462 9.73614 10.63988 11.42456 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.033210 B = 0.003710 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.909532 B = 7546.165382 C = 7648.031901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.085 4.085 3 C -0.154 4.154 4 C 0.552 3.448 5 O -0.546 6.546 6 N -0.598 5.598 7 C 0.105 3.895 8 C -0.119 4.119 9 C -0.107 4.107 10 C 0.173 3.827 11 N -0.609 5.609 12 C -0.221 4.221 13 H 0.078 0.922 14 C -0.008 4.008 15 N -0.921 5.921 16 Si 0.909 3.091 17 H -0.280 1.280 18 H -0.290 1.290 19 H -0.291 1.291 20 C 0.126 3.874 21 C -0.095 4.095 22 C 0.112 3.888 23 C -0.146 4.146 24 C -0.162 4.162 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.024 0.976 36 H 0.252 0.748 37 H 0.031 0.969 38 H 0.040 0.960 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.097 0.903 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.720 -1.013 -19.306 20.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.122 4.122 3 C -0.157 4.157 4 C 0.339 3.661 5 O -0.424 6.424 6 N -0.330 5.330 7 C -0.017 4.017 8 C -0.158 4.158 9 C -0.109 4.109 10 C 0.048 3.952 11 N -0.335 5.335 12 C -0.348 4.348 13 H 0.096 0.904 14 C -0.204 4.204 15 N -0.568 5.568 16 Si 0.739 3.261 17 H -0.205 1.205 18 H -0.217 1.217 19 H -0.218 1.218 20 C 0.000 4.000 21 C -0.133 4.133 22 C -0.010 4.010 23 C -0.183 4.183 24 C -0.199 4.199 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.042 0.958 36 H 0.062 0.938 37 H 0.048 0.952 38 H 0.058 0.942 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.105 0.895 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.115 0.885 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.187 -0.488 -19.069 19.768 hybrid contribution 0.068 0.052 1.245 1.248 sum 5.255 -0.436 -17.824 18.587 Atomic orbital electron populations 1.21731 0.94882 1.01671 1.02610 1.21209 0.96735 0.91471 1.02795 1.21463 1.00792 0.97345 0.96078 1.19464 0.80272 0.83631 0.82717 1.90664 1.35302 1.33162 1.83237 1.48031 1.49295 1.29128 1.06575 1.21822 0.93133 0.87477 0.99288 1.21756 1.00639 0.97814 0.95618 1.22373 0.97933 0.96741 0.93827 1.22232 0.98106 0.91188 0.83698 1.45961 1.32105 1.47783 1.07627 1.19058 1.11437 1.19210 0.85145 0.90392 1.24752 0.98198 0.99297 0.98183 1.69829 1.18756 1.33563 1.34653 0.86094 0.77387 0.77834 0.84744 1.20528 1.21746 1.21834 1.22588 0.92712 0.97583 0.87082 1.21466 0.97291 0.96698 0.97856 1.21706 0.99619 0.92667 0.86976 1.23000 1.00852 1.01817 0.92633 1.23105 0.89868 1.03752 1.03205 0.92324 0.92515 0.92374 0.90423 0.91056 0.89496 0.91465 0.90715 0.91841 0.91029 0.95805 0.93788 0.95193 0.94220 0.89544 0.92194 0.91520 0.89496 0.88075 0.88104 0.88465 0.87859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.48 37.16 0.35 -1.21 16 2 C -0.08 -0.77 5.52 -26.73 -0.15 -0.92 16 3 C -0.15 -1.62 0.84 -155.66 -0.13 -1.75 16 4 C 0.55 7.86 6.15 -10.99 -0.07 7.79 16 5 O -0.55 -9.74 16.19 5.56 0.09 -9.65 16 6 N -0.60 -8.22 2.95 -172.95 -0.51 -8.73 16 7 C 0.11 1.24 5.79 -3.90 -0.02 1.21 16 8 C -0.12 -1.64 5.24 -26.97 -0.14 -1.78 16 9 C -0.11 -1.89 0.77 -154.42 -0.12 -2.01 16 10 C 0.17 3.96 6.64 -3.16 -0.02 3.94 16 11 N -0.61 -15.24 3.53 -179.77 -0.64 -15.87 16 12 C -0.22 -6.15 10.70 -15.06 -0.16 -6.31 16 13 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 14 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 15 N -0.92 -27.20 11.39 55.49 0.63 -26.57 16 16 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 C 0.13 2.48 7.72 -3.15 -0.02 2.45 16 21 C -0.09 -1.64 5.21 -26.73 -0.14 -1.78 16 22 C 0.11 1.71 6.30 -3.66 -0.02 1.68 16 23 C -0.15 -1.36 9.76 -26.69 -0.26 -1.62 16 24 C -0.16 -1.36 9.61 -26.69 -0.26 -1.62 16 25 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 26 H 0.06 0.70 7.90 -51.93 -0.41 0.29 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.69 5.88 -51.93 -0.31 0.38 16 29 H 0.07 0.52 8.09 -51.93 -0.42 0.09 16 30 H 0.09 0.84 4.02 -51.93 -0.21 0.63 16 31 H 0.07 0.76 8.07 -51.93 -0.42 0.34 16 32 H 0.07 0.98 8.12 -51.93 -0.42 0.56 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 1.85 7.12 -51.93 -0.37 1.48 16 35 H 0.02 0.56 8.09 -51.93 -0.42 0.14 16 36 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.03 0.57 8.07 -51.93 -0.42 0.15 16 38 H 0.04 0.75 7.41 -51.93 -0.38 0.37 16 39 H 0.09 1.72 8.01 -51.93 -0.42 1.30 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.07 0.98 7.49 -51.93 -0.39 0.59 16 42 H 0.09 1.40 6.97 -51.93 -0.36 1.03 16 43 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.10 1.07 8.06 -51.93 -0.42 0.65 16 45 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 356.57 15.07 5.37 5.37 Total: -1.00 -32.06 356.57 -9.20 -41.26 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -7.87 Total: -0.74 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -1.26 Total: -2.23 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.51 Total: -51.17 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.06 -9.20 -41.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035784820.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.822 kcal (2) G-P(sol) polarization free energy of solvation -32.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds