Wall clock time and date at job start Tue Mar 31 2020 07:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50693 * 119.99847 * 2 1 4 4 C 1.53000 * 109.47229 * 0.02562 * 3 2 1 5 5 C 1.53008 * 109.47174 * 240.00154 * 3 2 1 6 6 C 1.50700 * 109.47368 * 120.00290 * 3 2 1 7 7 O 1.21285 * 119.99668 * 8.41018 * 6 3 2 8 8 N 1.34775 * 120.00374 * 188.41036 * 6 3 2 9 9 C 1.46596 * 119.68330 * 174.23082 * 8 6 3 10 10 C 1.54209 * 110.18832 * 131.86545 * 9 8 6 11 11 C 1.51530 * 107.30034 * 51.89160 * 10 9 8 12 12 H 1.08994 * 109.28642 * 52.66900 * 11 10 9 13 13 C 1.55465 * 107.26935 * 294.39813 * 11 10 9 14 14 H 1.09004 * 111.50492 * 309.08829 * 13 11 10 15 15 C 1.53736 * 100.17835 * 191.22129 * 13 11 10 16 16 C 1.55284 * 101.87693 * 39.09122 * 15 13 11 17 17 N 1.45469 * 117.33251 * 177.73827 * 11 10 9 18 18 C 1.36937 * 126.40808 * 328.72502 * 17 11 10 19 19 H 1.08002 * 119.99736 * 0.02562 * 18 17 11 20 20 C 1.38816 * 120.00414 * 180.02562 * 18 17 11 21 21 N 1.31619 * 119.99587 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00222 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46866 * 90.00377 * 22 20 18 24 24 H 1.48503 * 109.47236 * 210.00003 * 22 20 18 25 25 H 1.48495 * 109.47119 * 330.00098 * 22 20 18 26 26 C 1.47721 * 119.68565 * 354.25304 * 8 6 3 27 27 H 1.08001 * 119.99847 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.00076 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.00039 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.46896 * 187.13309 * 4 3 2 31 31 H 1.09003 * 109.47255 * 307.12573 * 4 3 2 32 32 H 1.08991 * 109.47114 * 67.12809 * 4 3 2 33 33 H 1.09001 * 109.47040 * 314.65100 * 5 3 2 34 34 H 1.08998 * 109.47043 * 74.64850 * 5 3 2 35 35 H 1.08999 * 109.47138 * 194.64961 * 5 3 2 36 36 H 1.09002 * 109.25167 * 252.47780 * 9 8 6 37 37 H 1.08997 * 109.25853 * 11.91519 * 9 8 6 38 38 H 1.09004 * 110.22393 * 292.27109 * 10 9 8 39 39 H 1.08996 * 109.59107 * 171.16170 * 10 9 8 40 40 H 1.09007 * 110.95444 * 280.93726 * 15 13 11 41 41 H 1.09003 * 110.95204 * 157.25218 * 15 13 11 42 42 H 1.09005 * 109.92041 * 96.84332 * 16 15 13 43 43 H 1.09000 * 109.92330 * 218.14592 * 16 15 13 44 44 H 0.97001 * 119.99972 * 180.02562 * 21 20 18 45 45 H 1.08993 * 110.06866 * 112.82381 * 26 8 6 46 46 H 1.08997 * 110.06890 * 351.24718 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 1.0692 2.4680 0.0006 5 6 2.9431 1.3862 -1.2493 6 6 2.9299 1.3849 1.2304 7 8 3.0540 0.4155 1.9486 8 7 3.5669 2.5335 1.5327 9 6 4.3044 2.6442 2.7948 10 6 5.7100 3.2254 2.5407 11 6 5.5327 4.4996 1.7399 12 1 4.8203 5.1486 2.2490 13 6 4.9568 4.0967 0.3531 14 1 5.5446 3.3032 -0.1085 15 6 5.1187 5.4246 -0.4045 16 6 6.4929 5.9249 0.1176 17 7 6.7311 5.2595 1.4198 18 6 7.8671 5.3439 2.1798 19 1 7.9300 4.8122 3.1178 20 6 8.9378 6.1129 1.7447 21 7 8.8609 6.7612 0.6019 22 14 10.4871 6.2285 2.7818 23 1 11.4262 5.1466 2.3909 24 1 11.1327 7.5477 2.5618 25 1 10.1341 6.0833 4.2168 26 6 3.5149 3.6691 0.5893 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.6081 3.4068 -0.1270 31 1 0.3613 2.3413 -0.8185 32 1 0.5299 2.4844 0.9476 33 1 3.4641 0.4390 -1.3889 34 1 2.3197 1.5897 -2.1200 35 1 3.6721 2.1875 -1.1290 36 1 3.7553 3.2941 3.4761 37 1 4.4015 1.6551 3.2424 38 1 6.3154 2.5150 1.9777 39 1 6.1903 3.4500 3.4930 40 1 4.3241 6.1229 -0.1414 41 1 5.1479 5.2580 -1.4813 42 1 7.2790 5.6538 -0.5871 43 1 6.4678 7.0063 0.2522 44 1 9.6091 7.2983 0.2976 45 1 2.9474 4.4914 1.0248 46 1 3.0595 3.3547 -0.3497 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036793067.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:48 Heat of formation + Delta-G solvation = 31.969520 kcal Electronic energy + Delta-G solvation = -25091.455278 eV Core-core repulsion = 21790.092803 eV Total energy + Delta-G solvation = -3301.362475 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.85880 -38.53730 -36.50809 -35.33628 -32.59577 -32.26665 -30.53617 -29.52860 -28.06229 -27.56554 -25.35962 -24.21475 -22.94363 -22.41467 -20.46615 -20.01737 -19.35162 -18.33369 -16.84385 -16.41055 -16.13476 -15.36779 -15.02535 -14.89239 -14.61057 -14.22762 -13.98053 -13.80872 -13.26518 -13.13458 -12.75086 -12.62332 -12.41396 -12.24325 -12.19899 -11.93754 -11.55631 -11.45864 -11.41084 -11.08724 -10.89120 -10.83300 -10.69787 -10.58695 -10.14321 -10.12558 -9.90522 -9.80005 -9.63378 -9.50150 -9.22588 -8.64243 -8.47061 -6.85717 -5.73448 -3.06357 2.12225 2.71838 3.16182 3.39170 3.44633 3.45956 4.35985 4.47862 4.51504 4.77661 4.85797 4.90232 5.15742 5.23721 5.29604 5.31209 5.39895 5.44450 5.46547 5.53007 5.57562 5.58719 5.66138 5.77937 5.81114 5.86633 5.88737 5.99901 6.07402 6.10446 6.18798 6.25131 6.38005 6.45040 6.48716 6.58482 6.62223 6.64443 6.84806 7.04605 7.49668 7.54141 7.58006 7.78600 8.22516 8.27612 9.18072 9.81460 10.48830 11.39179 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.031285 B = 0.004075 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.785207 B = 6870.288808 C = 7377.904620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 C -0.055 4.055 4 C -0.164 4.164 5 C -0.151 4.151 6 C 0.525 3.475 7 O -0.546 6.546 8 N -0.603 5.603 9 C 0.115 3.885 10 C -0.128 4.128 11 C 0.169 3.831 12 H 0.020 0.980 13 C -0.129 4.129 14 H 0.081 0.919 15 C -0.136 4.136 16 C 0.177 3.823 17 N -0.595 5.595 18 C -0.225 4.225 19 H 0.078 0.922 20 C -0.008 4.008 21 N -0.922 5.922 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.100 3.900 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.038 0.962 44 H 0.252 0.748 45 H 0.071 0.929 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.895 -7.623 -4.111 18.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.136 4.136 3 C -0.058 4.058 4 C -0.221 4.221 5 C -0.208 4.208 6 C 0.313 3.687 7 O -0.424 6.424 8 N -0.336 5.336 9 C -0.008 4.008 10 C -0.167 4.167 11 C 0.060 3.940 12 H 0.037 0.963 13 C -0.149 4.149 14 H 0.099 0.901 15 C -0.175 4.175 16 C 0.053 3.947 17 N -0.319 5.319 18 C -0.353 4.353 19 H 0.096 0.904 20 C -0.204 4.204 21 N -0.570 5.570 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.022 4.022 27 H 0.116 0.884 28 H 0.121 0.879 29 H 0.131 0.869 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.089 0.911 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.584 -7.985 -3.698 17.897 hybrid contribution 0.964 0.140 0.559 1.123 sum -14.621 -7.845 -3.139 16.887 Atomic orbital electron populations 1.23950 0.95869 1.02099 1.01772 1.22553 0.95552 0.96738 0.98775 1.19838 0.95683 0.95746 0.94575 1.22445 0.99056 0.97726 1.02845 1.22093 0.99662 1.03583 0.95477 1.20427 0.79695 0.82358 0.86268 1.90654 1.63692 1.35805 1.52221 1.48222 1.50901 1.13475 1.20965 1.21704 0.92379 1.02186 0.84486 1.21936 0.94817 0.98269 1.01711 1.20653 0.90019 0.90995 0.92305 0.96255 1.22711 0.94587 0.98117 0.99480 0.90064 1.22731 1.00563 0.95455 0.98779 1.21530 0.90555 0.95748 0.86916 1.44210 1.12555 1.53810 1.21369 1.19006 0.90609 1.24780 1.00929 0.90389 1.24782 0.98377 0.99779 0.97485 1.69932 1.31135 1.34971 1.20930 0.86151 0.83328 0.77043 0.79448 1.21648 1.21705 1.20704 1.22431 0.97926 0.88432 0.93417 0.88406 0.87910 0.86872 0.89893 0.91117 0.91940 0.91691 0.91123 0.90359 0.91995 0.89481 0.91451 0.90774 0.92312 0.92051 0.92725 0.94362 0.93783 0.91078 0.87726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.88 13.71 29.01 0.40 -1.48 16 2 C -0.12 -1.31 7.96 -36.03 -0.29 -1.60 16 3 C -0.06 -0.62 0.72 -156.81 -0.11 -0.73 16 4 C -0.16 -1.48 6.63 37.16 0.25 -1.23 16 5 C -0.15 -1.51 8.07 37.16 0.30 -1.21 16 6 C 0.52 7.76 6.44 -10.99 -0.07 7.69 16 7 O -0.55 -9.92 15.39 5.55 0.09 -9.84 16 8 N -0.60 -8.66 2.98 -172.34 -0.51 -9.18 16 9 C 0.12 1.77 6.37 -3.36 -0.02 1.75 16 10 C -0.13 -2.29 5.48 -26.84 -0.15 -2.43 16 11 C 0.17 3.30 2.59 -67.92 -0.18 3.12 16 12 H 0.02 0.40 7.92 -51.93 -0.41 -0.01 16 13 C -0.13 -2.09 2.67 -89.32 -0.24 -2.33 16 14 H 0.08 1.43 8.09 -51.93 -0.42 1.01 16 15 C -0.14 -2.31 6.53 -25.14 -0.16 -2.47 16 16 C 0.18 4.10 5.45 -1.92 -0.01 4.09 16 17 N -0.60 -14.58 3.35 -163.03 -0.55 -15.13 16 18 C -0.23 -6.10 9.88 -15.06 -0.15 -6.25 16 19 H 0.08 2.05 7.23 -52.49 -0.38 1.67 16 20 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 21 N -0.92 -26.63 10.44 55.49 0.58 -26.05 16 22 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 26 C 0.10 1.27 3.36 -3.76 -0.01 1.26 16 27 H 0.10 0.80 8.06 -52.49 -0.42 0.37 16 28 H 0.10 0.85 5.68 -52.49 -0.30 0.55 16 29 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 30 H 0.08 0.70 4.45 -51.93 -0.23 0.47 16 31 H 0.07 0.52 7.03 -51.93 -0.37 0.15 16 32 H 0.06 0.59 7.89 -51.93 -0.41 0.18 16 33 H 0.06 0.67 8.05 -51.93 -0.42 0.25 16 34 H 0.07 0.56 8.06 -51.93 -0.42 0.15 16 35 H 0.08 0.83 5.18 -51.93 -0.27 0.56 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.09 1.40 6.92 -51.93 -0.36 1.04 16 38 H 0.07 1.29 8.09 -51.93 -0.42 0.87 16 39 H 0.07 1.35 7.62 -51.93 -0.40 0.96 16 40 H 0.06 0.90 8.12 -51.93 -0.42 0.48 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.05 1.42 7.21 -51.93 -0.37 1.04 16 43 H 0.04 0.98 7.77 -51.93 -0.40 0.57 16 44 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.07 0.86 7.97 -51.93 -0.41 0.44 16 46 H 0.11 1.10 2.66 -51.93 -0.14 0.96 16 LS Contribution 341.05 15.07 5.14 5.14 Total: -1.00 -31.23 341.05 -8.19 -39.42 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -7.37 Total: 0.86 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -0.54 Total: -2.15 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -0.48 Total: -50.36 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.23 -8.19 -39.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036793067.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.394 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds