Wall clock time and date at job start Tue Mar 31 2020 07:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50693 * 119.99847 * 2 1 4 4 C 1.53000 * 109.47229 * 0.02562 * 3 2 1 5 5 C 1.53008 * 109.47174 * 240.00154 * 3 2 1 6 6 C 1.50700 * 109.47368 * 120.00290 * 3 2 1 7 7 O 1.21285 * 119.99668 * 8.41018 * 6 3 2 8 8 N 1.34775 * 120.00374 * 188.41036 * 6 3 2 9 9 C 1.46596 * 119.68330 * 174.23082 * 8 6 3 10 10 C 1.54209 * 110.18832 * 131.86545 * 9 8 6 11 11 C 1.51530 * 107.30034 * 51.89160 * 10 9 8 12 12 H 1.08994 * 109.28642 * 52.66900 * 11 10 9 13 13 C 1.55465 * 107.26935 * 294.39813 * 11 10 9 14 14 H 1.09004 * 111.50492 * 309.08829 * 13 11 10 15 15 C 1.53736 * 100.17835 * 191.22129 * 13 11 10 16 16 C 1.55284 * 101.87693 * 39.09122 * 15 13 11 17 17 N 1.45469 * 117.33251 * 177.73827 * 11 10 9 18 18 C 1.36937 * 126.40808 * 328.72502 * 17 11 10 19 19 H 1.08002 * 119.99736 * 0.02562 * 18 17 11 20 20 C 1.38816 * 120.00414 * 180.02562 * 18 17 11 21 21 N 1.31619 * 119.99587 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00222 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46866 * 90.00377 * 22 20 18 24 24 H 1.48503 * 109.47236 * 210.00003 * 22 20 18 25 25 H 1.48495 * 109.47119 * 330.00098 * 22 20 18 26 26 C 1.47721 * 119.68565 * 354.25304 * 8 6 3 27 27 H 1.08001 * 119.99847 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.00076 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.00039 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.46896 * 187.13309 * 4 3 2 31 31 H 1.09003 * 109.47255 * 307.12573 * 4 3 2 32 32 H 1.08991 * 109.47114 * 67.12809 * 4 3 2 33 33 H 1.09001 * 109.47040 * 314.65100 * 5 3 2 34 34 H 1.08998 * 109.47043 * 74.64850 * 5 3 2 35 35 H 1.08999 * 109.47138 * 194.64961 * 5 3 2 36 36 H 1.09002 * 109.25167 * 252.47780 * 9 8 6 37 37 H 1.08997 * 109.25853 * 11.91519 * 9 8 6 38 38 H 1.09004 * 110.22393 * 292.27109 * 10 9 8 39 39 H 1.08996 * 109.59107 * 171.16170 * 10 9 8 40 40 H 1.09007 * 110.95444 * 280.93726 * 15 13 11 41 41 H 1.09003 * 110.95204 * 157.25218 * 15 13 11 42 42 H 1.09005 * 109.92041 * 96.84332 * 16 15 13 43 43 H 1.09000 * 109.92330 * 218.14592 * 16 15 13 44 44 H 0.97001 * 119.99972 * 180.02562 * 21 20 18 45 45 H 1.08993 * 110.06866 * 112.82381 * 26 8 6 46 46 H 1.08997 * 110.06890 * 351.24718 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 1.0692 2.4680 0.0006 5 6 2.9431 1.3862 -1.2493 6 6 2.9299 1.3849 1.2304 7 8 3.0540 0.4155 1.9486 8 7 3.5669 2.5335 1.5327 9 6 4.3044 2.6442 2.7948 10 6 5.7100 3.2254 2.5407 11 6 5.5327 4.4996 1.7399 12 1 4.8203 5.1486 2.2490 13 6 4.9568 4.0967 0.3531 14 1 5.5446 3.3032 -0.1085 15 6 5.1187 5.4246 -0.4045 16 6 6.4929 5.9249 0.1176 17 7 6.7311 5.2595 1.4198 18 6 7.8671 5.3439 2.1798 19 1 7.9300 4.8122 3.1178 20 6 8.9378 6.1129 1.7447 21 7 8.8609 6.7612 0.6019 22 14 10.4871 6.2285 2.7818 23 1 11.4262 5.1466 2.3909 24 1 11.1327 7.5477 2.5618 25 1 10.1341 6.0833 4.2168 26 6 3.5149 3.6691 0.5893 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.6081 3.4068 -0.1270 31 1 0.3613 2.3413 -0.8185 32 1 0.5299 2.4844 0.9476 33 1 3.4641 0.4390 -1.3889 34 1 2.3197 1.5897 -2.1200 35 1 3.6721 2.1875 -1.1290 36 1 3.7553 3.2941 3.4761 37 1 4.4015 1.6551 3.2424 38 1 6.3154 2.5150 1.9777 39 1 6.1903 3.4500 3.4930 40 1 4.3241 6.1229 -0.1414 41 1 5.1479 5.2580 -1.4813 42 1 7.2790 5.6538 -0.5871 43 1 6.4678 7.0063 0.2522 44 1 9.6091 7.2983 0.2976 45 1 2.9474 4.4914 1.0248 46 1 3.0595 3.3547 -0.3497 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036793067.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:47 Heat of formation + Delta-G solvation = 13.316834 kcal Electronic energy + Delta-G solvation = -25092.264119 eV Core-core repulsion = 21790.092803 eV Total energy + Delta-G solvation = -3302.171316 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.99958 -39.95221 -37.47740 -36.79675 -34.40941 -33.54085 -31.68790 -31.09650 -29.51049 -28.29578 -26.89425 -25.70909 -24.14469 -23.65823 -21.98700 -21.43670 -20.66895 -19.31805 -18.52179 -17.53643 -17.39871 -16.83759 -16.44420 -16.07845 -15.92198 -15.61849 -15.25582 -15.04955 -14.72563 -14.43280 -13.97189 -13.90778 -13.63063 -13.38330 -13.18094 -13.11972 -13.09823 -12.88008 -12.68946 -12.55713 -12.27873 -12.11424 -12.01013 -11.92137 -11.70373 -11.64795 -11.50574 -11.45118 -11.03223 -10.70903 -10.55274 -10.24008 -9.68987 -8.85908 -7.84110 -5.17510 1.32922 1.44644 1.45546 1.53899 1.59772 2.06636 2.49667 3.34309 3.41658 3.46401 3.70718 3.79025 3.94528 3.99315 4.08110 4.12988 4.18497 4.27573 4.39213 4.48831 4.49803 4.56878 4.64821 4.71862 4.76710 4.78315 4.84994 4.88312 4.90494 4.95315 5.07204 5.10498 5.15811 5.18967 5.28963 5.34062 5.47843 5.55954 5.57728 5.70296 5.74240 5.81004 5.85994 6.22372 6.39191 7.11163 7.14030 7.80939 8.48081 9.27180 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.031285 B = 0.004075 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.785207 B = 6870.288808 C = 7377.904620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.147 4.147 3 C -0.050 4.050 4 C -0.162 4.162 5 C -0.150 4.150 6 C 0.519 3.481 7 O -0.587 6.587 8 N -0.604 5.604 9 C 0.124 3.876 10 C -0.119 4.119 11 C 0.156 3.844 12 H 0.025 0.975 13 C -0.112 4.112 14 H 0.065 0.935 15 C -0.117 4.117 16 C 0.178 3.822 17 N -0.617 5.617 18 C -0.232 4.232 19 H 0.079 0.921 20 C -0.067 4.067 21 N -0.950 5.950 22 Si 0.971 3.029 23 H -0.289 1.289 24 H -0.294 1.294 25 H -0.270 1.270 26 C 0.108 3.892 27 H 0.108 0.892 28 H 0.120 0.880 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.046 0.954 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.016 0.984 43 H 0.004 0.996 44 H 0.245 0.755 45 H 0.092 0.908 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.753 -7.789 -4.754 20.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.165 4.165 3 C -0.053 4.053 4 C -0.219 4.219 5 C -0.207 4.207 6 C 0.309 3.691 7 O -0.467 6.467 8 N -0.336 5.336 9 C 0.000 4.000 10 C -0.159 4.159 11 C 0.049 3.951 12 H 0.042 0.958 13 C -0.132 4.132 14 H 0.084 0.916 15 C -0.156 4.156 16 C 0.054 3.946 17 N -0.342 5.342 18 C -0.361 4.361 19 H 0.097 0.903 20 C -0.259 4.259 21 N -0.599 5.599 22 Si 0.800 3.200 23 H -0.217 1.217 24 H -0.221 1.221 25 H -0.195 1.195 26 C -0.013 4.013 27 H 0.126 0.874 28 H 0.138 0.862 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.034 0.966 43 H 0.022 0.978 44 H 0.055 0.945 45 H 0.110 0.890 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -18.478 -8.161 -4.338 20.660 hybrid contribution 1.827 0.135 0.797 1.998 sum -16.651 -8.026 -3.540 18.821 Atomic orbital electron populations 1.24189 0.95206 1.03463 0.98876 1.22520 0.96292 0.96239 1.01464 1.19866 0.95669 0.96925 0.92807 1.22473 0.98920 0.96741 1.03743 1.22118 0.99762 1.02861 0.95982 1.21212 0.79509 0.81468 0.86946 1.90633 1.65109 1.37124 1.53849 1.48292 1.50531 1.14075 1.20698 1.21527 0.91071 1.01757 0.85599 1.21811 0.96296 0.97160 1.00591 1.20898 0.88361 0.91036 0.94813 0.95763 1.22566 0.96634 0.97355 0.96677 0.91637 1.22592 0.97075 0.95733 1.00185 1.21360 0.93306 0.93945 0.86009 1.44508 1.13260 1.54743 1.21670 1.19346 0.91690 1.23844 1.01200 0.90272 1.25553 1.01298 1.00269 0.98824 1.70145 1.31478 1.35917 1.22402 0.85186 0.79834 0.76473 0.78537 1.21659 1.22096 1.19534 1.22581 0.95486 0.88523 0.94738 0.87388 0.86167 0.88584 0.88994 0.88658 0.92246 0.92770 0.88331 0.90894 0.90291 0.90392 0.93477 0.91787 0.89734 0.89392 0.96569 0.97792 0.94550 0.88971 0.84630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.81 13.71 67.78 0.93 -1.88 16 2 C -0.15 -2.97 7.96 25.64 0.20 -2.77 16 3 C -0.05 -0.97 0.72 -53.67 -0.04 -1.01 16 4 C -0.16 -2.18 6.63 71.98 0.48 -1.70 16 5 C -0.15 -2.56 8.07 71.98 0.58 -1.98 16 6 C 0.52 14.50 6.44 87.66 0.56 15.07 16 7 O -0.59 -21.16 15.39 -3.04 -0.05 -21.21 16 8 N -0.60 -16.12 2.98 -817.54 -2.44 -18.55 16 9 C 0.12 3.68 6.37 86.77 0.55 4.24 16 10 C -0.12 -4.28 5.48 30.52 0.17 -4.11 16 11 C 0.16 6.01 2.59 45.55 0.12 6.12 16 12 H 0.02 0.95 7.92 -2.39 -0.02 0.93 16 13 C -0.11 -3.43 2.67 -9.95 -0.03 -3.45 16 14 H 0.07 2.24 8.09 -2.38 -0.02 2.22 16 15 C -0.12 -3.71 6.53 31.63 0.21 -3.50 16 16 C 0.18 8.44 5.45 86.84 0.47 8.92 16 17 N -0.62 -30.84 3.35 -669.69 -2.24 -33.08 16 18 C -0.23 -12.86 9.88 84.03 0.83 -12.03 16 19 H 0.08 4.25 7.23 -2.91 -0.02 4.23 16 20 C -0.07 -3.79 5.49 84.86 0.47 -3.33 16 21 N -0.95 -56.96 10.44 21.65 0.23 -56.73 16 22 Si 0.97 46.18 29.55 68.60 2.03 48.21 16 23 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 24 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 25 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 26 C 0.11 2.36 3.36 85.89 0.29 2.65 16 27 H 0.11 1.44 8.06 -2.91 -0.02 1.41 16 28 H 0.12 1.44 5.68 -2.91 -0.02 1.42 16 29 H 0.10 2.23 8.06 -2.91 -0.02 2.20 16 30 H 0.09 1.06 4.45 -2.39 -0.01 1.05 16 31 H 0.09 0.86 7.03 -2.39 -0.02 0.84 16 32 H 0.06 0.87 7.89 -2.39 -0.02 0.85 16 33 H 0.05 1.04 8.05 -2.39 -0.02 1.02 16 34 H 0.10 1.14 8.06 -2.39 -0.02 1.12 16 35 H 0.07 1.31 5.18 -2.39 -0.01 1.30 16 36 H 0.08 2.10 8.14 -2.39 -0.02 2.09 16 37 H 0.08 2.49 6.92 -2.39 -0.02 2.48 16 38 H 0.05 1.85 8.09 -2.38 -0.02 1.83 16 39 H 0.06 2.38 7.62 -2.39 -0.02 2.36 16 40 H 0.08 2.29 8.12 -2.38 -0.02 2.27 16 41 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.02 0.87 7.21 -2.38 -0.02 0.85 16 43 H 0.00 0.20 7.77 -2.39 -0.02 0.19 16 44 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 45 H 0.09 1.76 7.97 -2.39 -0.02 1.74 16 46 H 0.14 2.23 2.66 -2.39 -0.01 2.22 16 Total: -1.00 -71.69 341.05 4.28 -67.41 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.96 Total: 12.71 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 5.79 Total: 1.24 kcal Atomic # 7 Polarization: -103.91 SS G_CDS: -4.45 Total: -108.37 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.05 Total: -21.21 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -71.69 4.28 -67.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036793067.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.731 kcal (2) G-P(sol) polarization free energy of solvation -71.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds