Wall clock time and date at job start Tue Mar 31 2020 07:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99924 * 2 1 4 4 C 1.53004 * 109.47121 * 359.97438 * 3 2 1 5 5 C 1.53003 * 109.47025 * 240.00146 * 3 2 1 6 6 C 1.50691 * 109.47379 * 119.99872 * 3 2 1 7 7 O 1.21286 * 120.00188 * 5.52900 * 6 3 2 8 8 N 1.34776 * 120.00369 * 185.25487 * 6 3 2 9 9 C 1.47215 * 121.35844 * 355.26999 * 8 6 3 10 10 C 1.52763 * 107.76165 * 238.06219 * 9 8 6 11 11 C 1.53154 * 110.84035 * 302.11791 * 10 9 8 12 12 H 1.08993 * 111.79884 * 289.67850 * 11 10 9 13 13 C 1.53939 * 110.88684 * 55.26723 * 11 10 9 14 14 H 1.08998 * 109.51286 * 188.81444 * 13 11 10 15 15 C 1.54201 * 102.21081 * 72.76642 * 13 11 10 16 16 C 1.54723 * 102.06300 * 37.57173 * 15 13 11 17 17 N 1.47215 * 107.24280 * 338.47440 * 16 15 13 18 18 C 1.36929 * 125.88868 * 176.28428 * 17 16 15 19 19 H 1.08005 * 119.99906 * 179.97438 * 18 17 16 20 20 C 1.38815 * 120.00424 * 359.97438 * 18 17 16 21 21 N 1.31613 * 119.99931 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00091 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47067 * 59.99901 * 22 20 18 24 24 H 1.48494 * 109.47033 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46885 * 299.99947 * 22 20 18 26 26 C 1.46711 * 121.36173 * 174.97951 * 8 6 3 27 27 H 1.07998 * 120.00059 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.99635 * 179.97438 * 1 2 3 29 29 H 1.07998 * 120.00059 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47144 * 184.96787 * 4 3 2 31 31 H 1.08995 * 109.46906 * 304.96349 * 4 3 2 32 32 H 1.08995 * 109.46990 * 64.96645 * 4 3 2 33 33 H 1.09007 * 109.46927 * 295.06254 * 5 3 2 34 34 H 1.09000 * 109.47550 * 55.06221 * 5 3 2 35 35 H 1.09005 * 109.47224 * 175.06496 * 5 3 2 36 36 H 1.08997 * 109.80330 * 357.62485 * 9 8 6 37 37 H 1.09002 * 109.80895 * 118.43465 * 9 8 6 38 38 H 1.09001 * 109.20146 * 62.46171 * 10 9 8 39 39 H 1.08991 * 109.20731 * 181.81251 * 10 9 8 40 40 H 1.08997 * 110.91514 * 155.76247 * 15 13 11 41 41 H 1.08995 * 110.91542 * 279.38221 * 15 13 11 42 42 H 1.08996 * 109.89001 * 97.88430 * 16 15 13 43 43 H 1.09005 * 109.88779 * 218.90956 * 16 15 13 44 44 H 0.96995 * 120.00296 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.14592 * 248.24276 * 26 8 6 46 46 H 1.08994 * 109.14795 * 7.39651 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4681 -0.0006 5 6 2.9431 1.3862 -1.2493 6 6 2.9299 1.3850 1.2304 7 8 3.0125 0.4326 1.9768 8 7 3.6173 2.5129 1.4986 9 6 3.6257 3.6465 0.5594 10 6 5.0788 3.9263 0.1798 11 6 5.9191 4.2260 1.4246 12 1 5.6642 5.1911 1.8623 13 6 5.8072 3.0837 2.4504 14 1 6.2815 3.3853 3.3843 15 6 6.6391 1.9674 1.7875 16 6 7.7993 2.7658 1.1468 17 7 7.3394 4.1556 0.9921 18 6 8.0905 5.2029 0.5293 19 1 7.6546 6.1882 0.4539 20 6 9.4120 4.9982 0.1571 21 7 9.9433 3.7976 0.2495 22 14 10.4363 6.4268 -0.4749 23 1 10.5167 7.4787 0.5702 24 1 11.8038 5.9489 -0.8017 25 1 9.8029 6.9884 -1.6949 26 6 4.3825 2.6635 2.7412 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5399 -0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.6113 3.4095 -0.0896 31 1 0.3859 2.3613 -0.8430 32 1 0.5023 2.4618 0.9302 33 1 3.7078 0.6106 -1.2062 34 1 2.3277 1.2406 -2.1371 35 1 3.4206 2.3650 -1.2946 36 1 3.0537 3.3913 -0.3326 37 1 3.1922 4.5252 1.0370 38 1 5.4905 3.0548 -0.3294 39 1 5.1152 4.7841 -0.4916 40 1 7.0143 1.2666 2.5333 41 1 6.0570 1.4483 1.0261 42 1 8.6739 2.7348 1.7964 43 1 8.0461 2.3438 0.1725 44 1 10.8669 3.6547 -0.0102 45 1 3.9046 3.4179 3.3661 46 1 4.3905 1.7124 3.2736 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036793068.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:52 Heat of formation + Delta-G solvation = 31.682099 kcal Electronic energy + Delta-G solvation = -25300.579059 eV Core-core repulsion = 21999.204121 eV Total energy + Delta-G solvation = -3301.374938 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.76737 -38.50192 -36.38962 -35.27832 -32.67599 -31.51566 -30.83848 -29.30911 -28.12678 -27.56175 -25.49337 -24.06639 -23.08651 -22.59264 -20.65832 -20.00060 -18.56359 -18.07241 -16.84885 -16.62119 -16.36017 -15.31040 -14.81404 -14.77239 -14.65851 -14.07906 -13.91528 -13.83176 -13.10212 -13.04800 -12.89424 -12.51249 -12.41470 -12.14679 -12.03124 -11.86070 -11.53611 -11.40536 -11.34971 -11.08836 -11.01344 -10.85507 -10.74156 -10.53298 -10.11798 -9.88016 -9.78394 -9.74589 -9.60051 -9.53272 -9.25286 -8.61611 -8.36916 -6.84248 -5.69885 -3.03690 2.16088 2.78097 3.23608 3.39479 3.43894 3.45499 4.40748 4.47717 4.57757 4.80814 4.90300 5.05615 5.11873 5.26614 5.36761 5.37616 5.41412 5.47047 5.49176 5.59840 5.62048 5.65085 5.67363 5.80475 5.85388 5.91657 6.00891 6.03205 6.05462 6.17700 6.30342 6.31521 6.41807 6.51998 6.56079 6.63306 6.65672 6.80493 6.91411 7.08599 7.56244 7.62651 7.65629 7.84501 8.25194 8.34020 9.21654 9.81765 10.50071 11.41193 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.028914 B = 0.004209 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.166744 B = 6650.299279 C = 6897.571533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 C -0.054 4.054 4 C -0.160 4.160 5 C -0.151 4.151 6 C 0.530 3.470 7 O -0.545 6.545 8 N -0.599 5.599 9 C 0.083 3.917 10 C -0.144 4.144 11 C 0.167 3.833 12 H 0.059 0.941 13 C -0.112 4.112 14 H 0.078 0.922 15 C -0.134 4.134 16 C 0.179 3.821 17 N -0.601 5.601 18 C -0.228 4.228 19 H 0.076 0.924 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.910 3.090 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.125 3.875 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.102 0.898 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.049 0.951 43 H 0.034 0.966 44 H 0.252 0.748 45 H 0.060 0.940 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.545 -2.819 -0.741 17.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.135 4.135 3 C -0.057 4.057 4 C -0.217 4.217 5 C -0.208 4.208 6 C 0.318 3.682 7 O -0.423 6.423 8 N -0.331 5.331 9 C -0.039 4.039 10 C -0.185 4.185 11 C 0.059 3.941 12 H 0.077 0.923 13 C -0.133 4.133 14 H 0.097 0.903 15 C -0.172 4.172 16 C 0.055 3.945 17 N -0.325 5.325 18 C -0.356 4.356 19 H 0.094 0.906 20 C -0.204 4.204 21 N -0.568 5.568 22 Si 0.741 3.259 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.213 1.213 26 C 0.002 3.998 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.131 0.869 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.119 0.881 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.052 0.948 44 H 0.062 0.938 45 H 0.079 0.921 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.207 -3.292 -0.414 17.524 hybrid contribution 0.753 0.722 -0.376 1.109 sum -16.454 -2.570 -0.790 16.672 Atomic orbital electron populations 1.23925 0.95839 1.02039 1.01983 1.22532 0.95534 0.96823 0.98575 1.19832 0.95637 0.95652 0.94627 1.22330 0.99025 0.97547 1.02769 1.22122 0.99411 1.03863 0.95362 1.20297 0.79639 0.81876 0.86408 1.90661 1.65013 1.36058 1.50529 1.48001 1.48442 1.15545 1.21159 1.22523 0.99328 0.88515 0.93578 1.22549 0.92777 1.02390 1.00792 1.21150 0.86454 0.95199 0.91308 0.92259 1.21946 0.93776 0.97736 0.99793 0.90341 1.22729 0.98430 0.96847 0.99212 1.21187 0.92245 0.82832 0.98255 1.44925 1.06170 1.05683 1.75736 1.18991 0.92527 0.88264 1.35815 0.90596 1.24785 0.97039 0.96749 1.01820 1.69955 1.13688 1.19637 1.53556 0.86234 0.79601 0.81435 0.78675 1.21247 1.21680 1.21252 1.21084 0.91109 1.02109 0.85471 0.87984 0.88419 0.86875 0.90222 0.91175 0.91945 0.91698 0.91363 0.90202 0.88084 0.91535 0.91353 0.91369 0.92506 0.92742 0.93232 0.94783 0.93766 0.92129 0.89584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.95 13.71 29.01 0.40 -1.55 16 2 C -0.12 -1.35 8.01 -36.03 -0.29 -1.64 16 3 C -0.05 -0.63 0.72 -156.81 -0.11 -0.74 16 4 C -0.16 -1.46 6.76 37.16 0.25 -1.21 16 5 C -0.15 -1.64 8.17 37.16 0.30 -1.33 16 6 C 0.53 7.96 6.49 -10.99 -0.07 7.89 16 7 O -0.55 -10.07 15.52 5.55 0.09 -9.98 16 8 N -0.60 -8.53 2.78 -174.07 -0.48 -9.01 16 9 C 0.08 1.04 4.27 -3.77 -0.02 1.02 16 10 C -0.14 -2.37 5.01 -26.77 -0.13 -2.50 16 11 C 0.17 3.17 3.62 -66.18 -0.24 2.93 16 12 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 13 C -0.11 -1.96 2.89 -90.33 -0.26 -2.22 16 14 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 15 C -0.13 -2.61 5.90 -25.20 -0.15 -2.76 16 16 C 0.18 4.35 5.09 -2.74 -0.01 4.34 16 17 N -0.60 -14.66 2.88 -161.77 -0.47 -15.12 16 18 C -0.23 -6.13 10.30 -15.06 -0.16 -6.29 16 19 H 0.08 1.96 7.83 -52.48 -0.41 1.55 16 20 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 21 N -0.92 -26.91 10.35 55.49 0.57 -26.34 16 22 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 C 0.13 1.88 5.89 -4.75 -0.03 1.85 16 27 H 0.10 0.86 5.68 -52.49 -0.30 0.56 16 28 H 0.10 0.83 8.06 -52.49 -0.42 0.41 16 29 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 30 H 0.08 0.67 4.65 -51.93 -0.24 0.43 16 31 H 0.07 0.53 7.18 -51.93 -0.37 0.15 16 32 H 0.06 0.59 7.78 -51.93 -0.40 0.18 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.87 4.81 -51.93 -0.25 0.62 16 36 H 0.10 1.07 2.37 -51.93 -0.12 0.94 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.27 6.89 -51.93 -0.36 0.91 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.05 1.07 7.41 -51.93 -0.38 0.68 16 42 H 0.05 1.35 7.23 -51.93 -0.38 0.97 16 43 H 0.03 0.92 7.67 -51.93 -0.40 0.52 16 44 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.09 1.39 7.03 -51.93 -0.37 1.02 16 LS Contribution 340.81 15.07 5.14 5.14 Total: -1.00 -31.24 340.81 -8.14 -39.38 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -7.35 Total: 1.66 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -0.61 Total: -2.52 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -0.38 Total: -50.47 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.24 -8.14 -39.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036793068.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.061 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds