Wall clock time and date at job start Tue Mar 31 2020 07:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99924 * 2 1 4 4 C 1.53004 * 109.47121 * 359.97438 * 3 2 1 5 5 C 1.53003 * 109.47025 * 240.00146 * 3 2 1 6 6 C 1.50691 * 109.47379 * 119.99872 * 3 2 1 7 7 O 1.21286 * 120.00188 * 5.52900 * 6 3 2 8 8 N 1.34776 * 120.00369 * 185.25487 * 6 3 2 9 9 C 1.47215 * 121.35844 * 355.26999 * 8 6 3 10 10 C 1.52763 * 107.76165 * 238.06219 * 9 8 6 11 11 C 1.53154 * 110.84035 * 302.11791 * 10 9 8 12 12 H 1.08993 * 111.79884 * 289.67850 * 11 10 9 13 13 C 1.53939 * 110.88684 * 55.26723 * 11 10 9 14 14 H 1.08998 * 109.51286 * 188.81444 * 13 11 10 15 15 C 1.54201 * 102.21081 * 72.76642 * 13 11 10 16 16 C 1.54723 * 102.06300 * 37.57173 * 15 13 11 17 17 N 1.47215 * 107.24280 * 338.47440 * 16 15 13 18 18 C 1.36929 * 125.88868 * 176.28428 * 17 16 15 19 19 H 1.08005 * 119.99906 * 179.97438 * 18 17 16 20 20 C 1.38815 * 120.00424 * 359.97438 * 18 17 16 21 21 N 1.31613 * 119.99931 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00091 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47067 * 59.99901 * 22 20 18 24 24 H 1.48494 * 109.47033 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46885 * 299.99947 * 22 20 18 26 26 C 1.46711 * 121.36173 * 174.97951 * 8 6 3 27 27 H 1.07998 * 120.00059 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.99635 * 179.97438 * 1 2 3 29 29 H 1.07998 * 120.00059 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47144 * 184.96787 * 4 3 2 31 31 H 1.08995 * 109.46906 * 304.96349 * 4 3 2 32 32 H 1.08995 * 109.46990 * 64.96645 * 4 3 2 33 33 H 1.09007 * 109.46927 * 295.06254 * 5 3 2 34 34 H 1.09000 * 109.47550 * 55.06221 * 5 3 2 35 35 H 1.09005 * 109.47224 * 175.06496 * 5 3 2 36 36 H 1.08997 * 109.80330 * 357.62485 * 9 8 6 37 37 H 1.09002 * 109.80895 * 118.43465 * 9 8 6 38 38 H 1.09001 * 109.20146 * 62.46171 * 10 9 8 39 39 H 1.08991 * 109.20731 * 181.81251 * 10 9 8 40 40 H 1.08997 * 110.91514 * 155.76247 * 15 13 11 41 41 H 1.08995 * 110.91542 * 279.38221 * 15 13 11 42 42 H 1.08996 * 109.89001 * 97.88430 * 16 15 13 43 43 H 1.09005 * 109.88779 * 218.90956 * 16 15 13 44 44 H 0.96995 * 120.00296 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.14592 * 248.24276 * 26 8 6 46 46 H 1.08994 * 109.14795 * 7.39651 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4681 -0.0006 5 6 2.9431 1.3862 -1.2493 6 6 2.9299 1.3850 1.2304 7 8 3.0125 0.4326 1.9768 8 7 3.6173 2.5129 1.4986 9 6 3.6257 3.6465 0.5594 10 6 5.0788 3.9263 0.1798 11 6 5.9191 4.2260 1.4246 12 1 5.6642 5.1911 1.8623 13 6 5.8072 3.0837 2.4504 14 1 6.2815 3.3853 3.3843 15 6 6.6391 1.9674 1.7875 16 6 7.7993 2.7658 1.1468 17 7 7.3394 4.1556 0.9921 18 6 8.0905 5.2029 0.5293 19 1 7.6546 6.1882 0.4539 20 6 9.4120 4.9982 0.1571 21 7 9.9433 3.7976 0.2495 22 14 10.4363 6.4268 -0.4749 23 1 10.5167 7.4787 0.5702 24 1 11.8038 5.9489 -0.8017 25 1 9.8029 6.9884 -1.6949 26 6 4.3825 2.6635 2.7412 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5399 -0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.6113 3.4095 -0.0896 31 1 0.3859 2.3613 -0.8430 32 1 0.5023 2.4618 0.9302 33 1 3.7078 0.6106 -1.2062 34 1 2.3277 1.2406 -2.1371 35 1 3.4206 2.3650 -1.2946 36 1 3.0537 3.3913 -0.3326 37 1 3.1922 4.5252 1.0370 38 1 5.4905 3.0548 -0.3294 39 1 5.1152 4.7841 -0.4916 40 1 7.0143 1.2666 2.5333 41 1 6.0570 1.4483 1.0261 42 1 8.6739 2.7348 1.7964 43 1 8.0461 2.3438 0.1725 44 1 10.8669 3.6547 -0.0102 45 1 3.9046 3.4179 3.3661 46 1 4.3905 1.7124 3.2736 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036793068.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:52 Heat of formation + Delta-G solvation = 13.501314 kcal Electronic energy + Delta-G solvation = -25301.367437 eV Core-core repulsion = 21999.204121 eV Total energy + Delta-G solvation = -3302.163316 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.93119 -39.94505 -37.41127 -36.72286 -34.44582 -32.91562 -31.92166 -30.96057 -29.71284 -28.31332 -26.97762 -25.68426 -24.25902 -23.85312 -21.91145 -21.77685 -19.70857 -19.26686 -18.76283 -17.74923 -17.39637 -16.74939 -16.47568 -16.05540 -15.85234 -15.51111 -15.29213 -14.99222 -14.41864 -14.35946 -14.10533 -13.80977 -13.66561 -13.31901 -13.23198 -13.15490 -13.04923 -12.82207 -12.71174 -12.63178 -12.42024 -12.23052 -12.06649 -11.88801 -11.67282 -11.56355 -11.48908 -11.19025 -11.15273 -10.70766 -10.58772 -10.24798 -9.59423 -8.86050 -7.80535 -5.15575 1.33635 1.46961 1.49978 1.56050 1.64417 2.15254 2.51597 3.37406 3.43525 3.55743 3.74417 3.81262 3.93269 3.98416 4.06365 4.13299 4.16707 4.30587 4.44399 4.47290 4.54394 4.62633 4.66496 4.71731 4.75719 4.79824 4.83901 4.87095 4.92238 4.95743 5.02171 5.10118 5.12141 5.25944 5.33461 5.38234 5.46674 5.57154 5.63621 5.68129 5.73629 5.78793 5.85480 6.20526 6.49840 7.11609 7.19806 7.80008 8.47831 9.29900 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.028914 B = 0.004209 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.166744 B = 6650.299279 C = 6897.571533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.147 4.147 3 C -0.049 4.049 4 C -0.157 4.157 5 C -0.148 4.148 6 C 0.523 3.477 7 O -0.586 6.586 8 N -0.600 5.600 9 C 0.092 3.908 10 C -0.134 4.134 11 C 0.160 3.840 12 H 0.073 0.927 13 C -0.100 4.100 14 H 0.077 0.923 15 C -0.120 4.120 16 C 0.193 3.807 17 N -0.620 5.620 18 C -0.231 4.231 19 H 0.088 0.912 20 C -0.071 4.071 21 N -0.956 5.956 22 Si 0.976 3.024 23 H -0.277 1.277 24 H -0.301 1.301 25 H -0.275 1.275 26 C 0.131 3.869 27 H 0.121 0.879 28 H 0.108 0.892 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.041 0.959 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.127 0.873 37 H 0.097 0.903 38 H 0.039 0.961 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.010 0.990 43 H -0.007 1.007 44 H 0.243 0.757 45 H 0.091 0.909 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.865 -0.938 -1.035 20.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.166 4.166 3 C -0.052 4.052 4 C -0.214 4.214 5 C -0.205 4.205 6 C 0.313 3.687 7 O -0.467 6.467 8 N -0.331 5.331 9 C -0.030 4.030 10 C -0.174 4.174 11 C 0.055 3.945 12 H 0.091 0.909 13 C -0.120 4.120 14 H 0.095 0.905 15 C -0.158 4.158 16 C 0.068 3.932 17 N -0.344 5.344 18 C -0.360 4.360 19 H 0.106 0.894 20 C -0.263 4.263 21 N -0.606 5.606 22 Si 0.805 3.195 23 H -0.203 1.203 24 H -0.228 1.228 25 H -0.201 1.201 26 C 0.008 3.992 27 H 0.139 0.861 28 H 0.126 0.874 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.144 0.856 37 H 0.115 0.885 38 H 0.058 0.942 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.029 0.971 43 H 0.012 0.988 44 H 0.052 0.948 45 H 0.110 0.890 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.582 -1.378 -0.710 20.640 hybrid contribution 1.749 0.095 -0.269 1.772 sum -18.833 -1.283 -0.978 18.902 Atomic orbital electron populations 1.24172 0.95079 1.03486 0.98830 1.22490 0.96344 0.96255 1.01514 1.19844 0.95667 0.96964 0.92715 1.22350 0.98734 0.96434 1.03833 1.22120 0.99187 1.02994 0.96208 1.21023 0.79600 0.81127 0.86968 1.90638 1.66463 1.37407 1.52161 1.48097 1.47968 1.15972 1.21083 1.22635 0.96700 0.89017 0.94653 1.22320 0.94926 1.01187 0.98972 1.21463 0.83908 0.96419 0.92743 0.90928 1.21862 0.95286 0.95858 0.98970 0.90468 1.22533 0.97011 0.97127 0.99120 1.20822 0.92828 0.83977 0.95590 1.45198 1.08543 1.04989 1.75687 1.19453 0.92852 0.89342 1.34346 0.89384 1.25632 0.98532 0.99084 1.03097 1.70199 1.13323 1.21756 1.55333 0.85181 0.77325 0.78558 0.78459 1.20290 1.22785 1.20119 1.20988 0.89584 1.02398 0.86277 0.86059 0.87383 0.88869 0.89215 0.88907 0.91862 0.94018 0.89064 0.90125 0.85599 0.88453 0.94223 0.91171 0.91807 0.92984 0.97126 0.98837 0.94789 0.89050 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.94 13.71 67.78 0.93 -2.01 16 2 C -0.15 -3.20 8.01 25.64 0.21 -3.00 16 3 C -0.05 -1.02 0.72 -53.67 -0.04 -1.06 16 4 C -0.16 -2.19 6.76 71.98 0.49 -1.70 16 5 C -0.15 -2.96 8.17 71.98 0.59 -2.38 16 6 C 0.52 14.96 6.49 87.65 0.57 15.53 16 7 O -0.59 -21.54 15.52 -3.05 -0.05 -21.58 16 8 N -0.60 -15.70 2.78 -823.03 -2.29 -17.99 16 9 C 0.09 1.97 4.27 86.16 0.37 2.34 16 10 C -0.13 -4.16 5.01 30.57 0.15 -4.01 16 11 C 0.16 5.91 3.62 44.95 0.16 6.07 16 12 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 13 C -0.10 -3.38 2.89 -10.61 -0.03 -3.41 16 14 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 15 C -0.12 -4.80 5.90 31.59 0.19 -4.61 16 16 C 0.19 9.87 5.09 86.83 0.44 10.31 16 17 N -0.62 -30.72 2.88 -665.74 -1.92 -32.64 16 18 C -0.23 -12.52 10.30 84.04 0.87 -11.66 16 19 H 0.09 4.45 7.83 -2.91 -0.02 4.43 16 20 C -0.07 -4.03 5.49 84.86 0.47 -3.56 16 21 N -0.96 -58.52 10.35 21.65 0.22 -58.30 16 22 Si 0.98 45.51 29.55 68.60 2.03 47.54 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 24 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 25 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 26 C 0.13 3.64 5.89 85.80 0.51 4.15 16 27 H 0.12 1.52 5.68 -2.91 -0.02 1.50 16 28 H 0.11 1.53 8.06 -2.91 -0.02 1.51 16 29 H 0.09 2.34 8.06 -2.91 -0.02 2.32 16 30 H 0.09 1.06 4.65 -2.39 -0.01 1.05 16 31 H 0.09 0.91 7.18 -2.39 -0.02 0.90 16 32 H 0.06 0.91 7.78 -2.39 -0.02 0.89 16 33 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.08 1.56 4.81 -2.38 -0.01 1.55 16 36 H 0.13 2.16 2.37 -2.39 -0.01 2.15 16 37 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.04 1.47 6.89 -2.39 -0.02 1.45 16 39 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.05 2.11 7.41 -2.39 -0.02 2.09 16 42 H 0.01 0.61 7.23 -2.39 -0.02 0.59 16 43 H -0.01 -0.38 7.67 -2.38 -0.02 -0.40 16 44 H 0.24 14.63 8.31 -92.71 -0.77 13.86 16 45 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.07 2.32 7.03 -2.39 -0.02 2.30 16 Total: -1.00 -71.78 340.81 4.81 -66.97 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.96 Total: 15.00 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 5.86 Total: 1.00 kcal Atomic # 7 Polarization: -104.94 SS G_CDS: -3.98 Total: -108.93 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.05 Total: -21.58 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -71.78 4.81 -66.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036793068.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.467 kcal (2) G-P(sol) polarization free energy of solvation -71.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds