Wall clock time and date at job start Tue Mar 31 2020 07:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 119.99903 * 2 1 4 4 C 1.52997 * 109.47239 * 359.97438 * 3 2 1 5 5 C 1.53000 * 109.46956 * 239.99580 * 3 2 1 6 6 C 1.50702 * 109.47211 * 120.00082 * 3 2 1 7 7 O 1.21289 * 119.99755 * 2.14225 * 6 3 2 8 8 N 1.34775 * 120.00514 * 182.14447 * 6 3 2 9 9 C 1.46528 * 120.97782 * 175.60284 * 8 6 3 10 10 C 1.51790 * 110.12949 * 233.77808 * 9 8 6 11 11 C 1.49516 * 115.07203 * 318.38881 * 10 9 8 12 12 H 1.08997 * 105.19286 * 156.93543 * 11 10 9 13 13 C 1.52640 * 117.06825 * 40.17179 * 11 10 9 14 14 H 1.09004 * 112.16444 * 83.01497 * 13 11 10 15 15 C 1.56117 * 101.81480 * 203.13495 * 13 11 10 16 16 C 1.55097 * 101.08202 * 37.63541 * 15 13 11 17 17 N 1.46264 * 114.16545 * 272.10921 * 11 10 9 18 18 C 1.36936 * 125.95847 * 315.59586 * 17 11 10 19 19 H 1.07995 * 120.00336 * 340.32431 * 18 17 11 20 20 C 1.38811 * 119.99660 * 160.32826 * 18 17 11 21 21 N 1.31620 * 120.00134 * 334.45892 * 20 18 17 22 22 Si 1.86800 * 120.00267 * 154.45892 * 20 18 17 23 23 H 1.48491 * 109.47430 * 180.02562 * 22 20 18 24 24 H 1.48504 * 109.47014 * 59.99727 * 22 20 18 25 25 H 1.48500 * 109.47187 * 300.00180 * 22 20 18 26 26 C 1.46171 * 120.95653 * 355.92797 * 8 6 3 27 27 H 1.08002 * 119.99804 * 179.97438 * 1 2 3 28 28 H 1.07990 * 120.00224 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.00236 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47036 * 173.94634 * 4 3 2 31 31 H 1.09000 * 109.47225 * 293.94302 * 4 3 2 32 32 H 1.08999 * 109.47205 * 53.94483 * 4 3 2 33 33 H 1.08994 * 109.47493 * 316.40395 * 5 3 2 34 34 H 1.09003 * 109.46873 * 76.40544 * 5 3 2 35 35 H 1.09004 * 109.46871 * 196.40059 * 5 3 2 36 36 H 1.09003 * 109.35685 * 113.58711 * 9 8 6 37 37 H 1.08994 * 109.25227 * 353.91695 * 9 8 6 38 38 H 1.08995 * 108.36422 * 196.93338 * 10 9 8 39 39 H 1.09000 * 108.21896 * 79.72899 * 10 9 8 40 40 H 1.08997 * 111.10007 * 279.67961 * 15 13 11 41 41 H 1.09007 * 111.09225 * 155.59049 * 15 13 11 42 42 H 1.08999 * 110.35377 * 204.07543 * 16 15 13 43 43 H 1.09005 * 110.43845 * 81.84183 * 16 15 13 44 44 H 0.97005 * 119.99806 * 355.43771 * 21 20 18 45 45 H 1.09000 * 109.51809 * 0.99691 * 26 8 6 46 46 H 1.08991 * 109.04197 * 241.08820 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9432 1.3861 -1.2492 6 6 2.9299 1.3849 1.2305 7 8 2.9647 0.4555 2.0090 8 7 3.6661 2.4891 1.4659 9 6 4.4411 2.6294 2.7014 10 6 4.0826 3.9295 3.3982 11 6 3.9245 5.1100 2.4943 12 1 3.2894 5.8061 3.0422 13 6 3.2185 4.8748 1.1616 14 1 2.1334 4.9036 1.2604 15 6 3.7635 6.0559 0.2984 16 6 5.2333 6.1297 0.7881 17 7 5.1674 5.8361 2.2348 18 6 6.1084 6.1790 3.1687 19 1 5.8449 6.2069 4.2157 20 6 7.4008 6.4907 2.7697 21 7 7.8781 6.0021 1.6446 22 14 8.4627 7.6038 3.8293 23 1 9.7896 7.7806 3.1865 24 1 8.6394 6.9897 5.1698 25 1 7.8031 8.9263 3.9738 26 6 3.7088 3.5845 0.4991 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9352 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.6099 3.4082 0.1077 31 1 0.5165 2.4729 -0.9401 32 1 0.3731 2.3513 0.8299 33 1 3.4401 0.4288 -1.4064 34 1 2.3239 1.6204 -2.1151 35 1 3.6921 2.1668 -1.1161 36 1 5.5047 2.6288 2.4628 37 1 4.2186 1.7918 3.3624 38 1 4.8624 4.1557 4.1254 39 1 3.1463 3.7809 3.9360 40 1 3.2301 6.9808 0.5174 41 1 3.7155 5.8197 -0.7647 42 1 5.6387 7.1277 0.6219 43 1 5.8426 5.3839 0.2774 44 1 7.3520 5.3720 1.1277 45 1 3.0692 3.3455 -0.3506 46 1 4.7353 3.7176 0.1576 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036793069.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:56 Heat of formation + Delta-G solvation = 28.215348 kcal Electronic energy + Delta-G solvation = -25546.186869 eV Core-core repulsion = 22244.661601 eV Total energy + Delta-G solvation = -3301.525268 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.87148 -38.68003 -36.45659 -35.28201 -32.92384 -32.42996 -30.62044 -29.28846 -27.89354 -27.50805 -25.62687 -24.15690 -23.49264 -22.62123 -20.53837 -20.11265 -18.91512 -18.05312 -17.08259 -16.60691 -16.45362 -15.24133 -15.18015 -14.98882 -14.28985 -14.21615 -13.97784 -13.73256 -13.27948 -13.25050 -12.98901 -12.76227 -12.53600 -12.32217 -12.14456 -11.80186 -11.68096 -11.40532 -11.32936 -11.02227 -10.97069 -10.79431 -10.64629 -10.34847 -10.23224 -10.15866 -10.06161 -9.98963 -9.66631 -9.47572 -9.22767 -8.45026 -8.26258 -6.91571 -6.10861 -3.19956 2.16208 2.78557 3.28678 3.47992 3.51466 3.69108 4.42550 4.54441 4.56332 4.81059 4.89384 4.94561 5.11358 5.14812 5.25600 5.27971 5.34524 5.41841 5.49526 5.52223 5.57135 5.58958 5.64259 5.74332 5.79845 5.81696 5.92289 5.97314 6.01150 6.09565 6.13957 6.27385 6.33006 6.42069 6.50453 6.52317 6.65802 6.71244 6.84426 6.91339 6.98124 6.99100 7.68487 7.80682 8.35274 8.46755 9.00481 9.78678 10.36688 11.20836 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.029365 B = 0.004527 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.286333 B = 6183.331096 C = 6467.351617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 C -0.055 4.055 4 C -0.163 4.163 5 C -0.154 4.154 6 C 0.526 3.474 7 O -0.547 6.547 8 N -0.597 5.597 9 C 0.121 3.879 10 C -0.133 4.133 11 C 0.171 3.829 12 H 0.008 0.992 13 C -0.109 4.109 14 H 0.081 0.919 15 C -0.133 4.133 16 C 0.140 3.860 17 N -0.590 5.590 18 C -0.331 4.331 19 H 0.063 0.937 20 C -0.024 4.024 21 N -0.918 5.918 22 Si 1.067 2.933 23 H -0.286 1.286 24 H -0.293 1.293 25 H -0.294 1.294 26 C 0.093 3.907 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.047 0.953 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.048 0.952 43 H 0.028 0.972 44 H 0.268 0.732 45 H 0.101 0.899 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.158 -6.215 -6.741 16.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.136 4.136 3 C -0.058 4.058 4 C -0.219 4.219 5 C -0.211 4.211 6 C 0.314 3.686 7 O -0.425 6.425 8 N -0.329 5.329 9 C -0.001 4.001 10 C -0.173 4.173 11 C 0.064 3.936 12 H 0.026 0.974 13 C -0.129 4.129 14 H 0.099 0.901 15 C -0.172 4.172 16 C 0.015 3.985 17 N -0.316 5.316 18 C -0.459 4.459 19 H 0.081 0.919 20 C -0.226 4.226 21 N -0.559 5.559 22 Si 0.897 3.103 23 H -0.211 1.211 24 H -0.220 1.220 25 H -0.221 1.221 26 C -0.029 4.029 27 H 0.116 0.884 28 H 0.121 0.879 29 H 0.130 0.870 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.046 0.954 44 H 0.080 0.920 45 H 0.118 0.882 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.561 -5.901 -6.125 14.353 hybrid contribution -1.433 -0.781 0.093 1.634 sum -12.993 -6.682 -6.032 15.807 Atomic orbital electron populations 1.23936 0.95868 1.02083 1.01727 1.22532 0.95590 0.96632 0.98804 1.19829 0.95689 0.95777 0.94489 1.22390 0.99005 0.97714 1.02833 1.22186 0.99783 1.03517 0.95586 1.20356 0.79475 0.81909 0.86868 1.90652 1.65959 1.37110 1.48777 1.47764 1.46865 1.17434 1.20809 1.21166 0.95270 0.98279 0.85356 1.21201 1.01588 0.94651 0.99815 1.19509 0.89814 0.91824 0.92462 0.97444 1.22397 0.98924 0.94620 0.96983 0.90053 1.23099 0.98733 0.97381 0.98005 1.21659 0.91958 0.99104 0.85773 1.44633 1.21382 1.61825 1.03769 1.19643 0.90889 1.46153 0.89248 0.91901 1.25764 0.94337 1.01776 1.00705 1.70812 1.38030 1.29831 1.17238 0.83483 0.76054 0.76140 0.74663 1.21125 1.22032 1.22135 1.22296 1.02865 0.86023 0.91739 0.88414 0.87910 0.86977 0.89942 0.91200 0.91711 0.91755 0.91157 0.90422 0.91501 0.89984 0.89699 0.93464 0.91420 0.91588 0.93325 0.95412 0.91975 0.88154 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.02 13.71 29.01 0.40 -1.62 16 2 C -0.12 -1.39 7.93 -36.03 -0.29 -1.68 16 3 C -0.05 -0.66 0.72 -156.81 -0.11 -0.78 16 4 C -0.16 -1.67 6.77 37.16 0.25 -1.42 16 5 C -0.15 -1.60 8.07 37.16 0.30 -1.30 16 6 C 0.53 8.48 6.48 -10.99 -0.07 8.41 16 7 O -0.55 -10.65 15.48 5.55 0.09 -10.57 16 8 N -0.60 -9.71 2.94 -174.59 -0.51 -10.22 16 9 C 0.12 2.22 6.47 -4.64 -0.03 2.19 16 10 C -0.13 -2.52 5.60 -29.07 -0.16 -2.68 16 11 C 0.17 3.39 2.63 -69.96 -0.18 3.20 16 12 H 0.01 0.17 8.06 -51.93 -0.42 -0.25 16 13 C -0.11 -1.72 3.32 -89.08 -0.30 -2.01 16 14 H 0.08 1.13 7.17 -51.93 -0.37 0.75 16 15 C -0.13 -2.14 6.47 -23.95 -0.15 -2.29 16 16 C 0.14 3.02 4.93 -2.24 -0.01 3.01 16 17 N -0.59 -14.00 3.19 -165.71 -0.53 -14.52 16 18 C -0.33 -8.92 9.04 -15.06 -0.14 -9.05 16 19 H 0.06 1.71 7.78 -52.49 -0.41 1.30 16 20 C -0.02 -0.66 5.19 -17.43 -0.09 -0.75 16 21 N -0.92 -26.78 13.06 55.49 0.72 -26.06 16 22 Si 1.07 24.91 29.99 -169.99 -5.10 19.81 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 26 C 0.09 1.36 3.16 -4.16 -0.01 1.35 16 27 H 0.10 0.86 8.06 -52.49 -0.42 0.44 16 28 H 0.10 0.94 5.68 -52.49 -0.30 0.64 16 29 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.08 0.87 3.47 -51.93 -0.18 0.69 16 31 H 0.07 0.57 7.73 -51.93 -0.40 0.17 16 32 H 0.06 0.69 7.10 -51.93 -0.37 0.32 16 33 H 0.06 0.67 8.03 -51.93 -0.42 0.25 16 34 H 0.07 0.58 7.96 -51.93 -0.41 0.17 16 35 H 0.08 0.85 4.94 -51.93 -0.26 0.59 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.08 1.51 7.02 -51.93 -0.36 1.14 16 38 H 0.08 1.80 7.01 -51.93 -0.36 1.43 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.07 0.87 7.98 -51.92 -0.41 0.46 16 42 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.03 0.64 5.54 -51.93 -0.29 0.35 16 44 H 0.27 7.78 5.79 -40.82 -0.24 7.54 16 45 H 0.10 1.18 2.85 -51.93 -0.15 1.03 16 46 H 0.08 1.28 6.49 -51.93 -0.34 0.95 16 LS Contribution 335.74 15.07 5.06 5.06 Total: -1.00 -31.24 335.74 -7.89 -39.12 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -7.02 Total: 2.79 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -0.60 Total: -5.41 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: -0.32 Total: -50.80 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.10 Total: 19.81 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.24 -7.89 -39.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036793069.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.337 kcal (2) G-P(sol) polarization free energy of solvation -31.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds