Wall clock time and date at job start Tue Mar 31 2020 07:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 119.99869 * 2 1 4 4 C 1.52995 * 109.47254 * 6.78501 * 3 2 1 5 5 C 1.53004 * 109.46877 * 246.78562 * 3 2 1 6 6 C 1.50705 * 109.47112 * 126.78713 * 3 2 1 7 7 O 1.21281 * 119.99834 * 237.67980 * 6 3 2 8 8 N 1.34773 * 119.99766 * 57.67848 * 6 3 2 9 9 C 1.46595 * 119.68504 * 5.08015 * 8 6 3 10 10 C 1.53958 * 110.57513 * 227.80393 * 9 8 6 11 11 C 1.51807 * 107.27960 * 308.73452 * 10 9 8 12 12 H 1.08996 * 109.29471 * 306.56320 * 11 10 9 13 13 C 1.55673 * 107.49193 * 65.11951 * 11 10 9 14 14 H 1.08999 * 112.49124 * 50.67604 * 13 11 10 15 15 C 1.53744 * 100.10256 * 168.92718 * 13 11 10 16 16 C 1.55291 * 101.84186 * 320.73642 * 15 13 11 17 17 N 1.45467 * 117.16809 * 181.63203 * 11 10 9 18 18 C 1.36936 * 126.40455 * 31.14639 * 17 11 10 19 19 H 1.08003 * 120.00171 * 354.23466 * 18 17 11 20 20 C 1.38809 * 120.00246 * 173.96144 * 18 17 11 21 21 N 1.31618 * 119.99981 * 5.18091 * 20 18 17 22 22 Si 1.86802 * 120.00324 * 185.17757 * 20 18 17 23 23 H 1.48502 * 109.46785 * 94.99612 * 22 20 18 24 24 H 1.48498 * 109.47392 * 214.99872 * 22 20 18 25 25 H 1.48502 * 109.46980 * 335.00064 * 22 20 18 26 26 C 1.47721 * 119.67779 * 185.05972 * 8 6 3 27 27 H 1.07998 * 119.99600 * 180.02562 * 1 2 3 28 28 H 1.07993 * 120.00001 * 359.97438 * 1 2 3 29 29 H 1.08006 * 119.99865 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47472 * 183.87957 * 4 3 2 31 31 H 1.09006 * 109.47204 * 303.88304 * 4 3 2 32 32 H 1.09003 * 109.47167 * 63.87892 * 4 3 2 33 33 H 1.08996 * 109.47397 * 304.84177 * 5 3 2 34 34 H 1.08996 * 109.47256 * 64.84993 * 5 3 2 35 35 H 1.09003 * 109.46438 * 184.84374 * 5 3 2 36 36 H 1.08995 * 109.25776 * 348.08403 * 9 8 6 37 37 H 1.08998 * 109.25777 * 107.56285 * 9 8 6 38 38 H 1.09003 * 109.87861 * 68.40213 * 10 9 8 39 39 H 1.08994 * 109.88605 * 189.41576 * 10 9 8 40 40 H 1.08997 * 110.95395 * 202.60497 * 15 13 11 41 41 H 1.08996 * 110.96132 * 78.87466 * 15 13 11 42 42 H 1.09004 * 109.92253 * 263.13976 * 16 15 13 43 43 H 1.08998 * 109.92132 * 141.82537 * 16 15 13 44 44 H 0.97005 * 120.00528 * 179.97438 * 21 20 18 45 45 H 1.08995 * 110.06856 * 8.75492 * 26 8 6 46 46 H 1.09001 * 110.06841 * 247.17234 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0780 2.4629 0.1704 5 6 2.8109 1.4624 -1.3258 6 6 3.0515 1.3147 1.1379 7 8 3.0011 2.1886 1.9774 8 7 3.9911 0.3522 1.2226 9 6 4.1177 -0.6354 0.1467 10 6 4.1974 -2.0595 0.7262 11 6 5.2809 -2.0537 1.7895 12 1 6.2027 -1.6590 1.3622 13 6 4.8038 -1.1183 2.9387 14 1 3.7952 -1.3551 3.2775 15 6 5.8487 -1.4576 4.0141 16 6 6.0043 -2.9922 3.8343 17 7 5.5630 -3.3149 2.4573 18 6 5.4479 -4.5662 1.9130 19 1 5.0315 -4.6887 0.9241 20 6 5.8716 -5.6766 2.6301 21 7 6.2889 -5.5389 3.8707 22 14 5.8496 -7.3665 1.8343 23 1 7.1892 -7.6635 1.2662 24 1 5.5066 -8.3897 2.8544 25 1 4.8357 -7.3897 0.7495 26 6 4.8838 0.3030 2.3986 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5400 0.9352 0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.6141 3.4095 0.1015 31 1 0.3223 2.4153 -0.6138 32 1 0.5954 2.3889 1.1450 33 1 3.4497 0.5943 -1.4880 34 1 2.0918 1.5419 -2.1410 35 1 3.4236 2.3634 -1.2926 36 1 3.2519 -0.5631 -0.5114 37 1 5.0224 -0.4297 -0.4255 38 1 3.2398 -2.3336 1.1690 39 1 4.4573 -2.7664 -0.0617 40 1 5.4755 -1.2177 5.0097 41 1 6.7904 -0.9447 3.8184 42 1 5.3788 -3.5161 4.5570 43 1 7.0480 -3.2776 3.9663 44 1 6.5847 -6.3149 4.3720 45 1 4.5447 1.0103 3.1554 46 1 5.9069 0.5331 2.1014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036793070.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:01 Heat of formation + Delta-G solvation = 28.763005 kcal Electronic energy + Delta-G solvation = -25115.250245 eV Core-core repulsion = 21813.748726 eV Total energy + Delta-G solvation = -3301.501520 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.80983 -38.53058 -36.50756 -35.37566 -32.68265 -31.56323 -31.01240 -29.58395 -28.41712 -27.16958 -25.23993 -24.37520 -22.82844 -22.36780 -20.22984 -20.04625 -19.56715 -18.49500 -16.87559 -16.37322 -16.05779 -15.46959 -15.12917 -14.69226 -14.46992 -14.29595 -13.91956 -13.72437 -13.20702 -13.03057 -12.73887 -12.51458 -12.39303 -12.34048 -12.11762 -11.76907 -11.60081 -11.56838 -11.43894 -11.26008 -10.94814 -10.83269 -10.73215 -10.45898 -10.17103 -10.08528 -9.95729 -9.82761 -9.61697 -9.45787 -9.21818 -8.62922 -8.46421 -6.84215 -5.74103 -3.06711 2.04575 2.78210 3.12579 3.38026 3.42854 3.45342 4.38101 4.46953 4.53138 4.80795 4.90486 4.98382 5.07464 5.18136 5.24182 5.34377 5.42528 5.48214 5.52294 5.57698 5.59224 5.63986 5.67149 5.78929 5.84421 5.90304 5.95925 6.03091 6.12094 6.15477 6.17775 6.22217 6.35955 6.45464 6.51082 6.58108 6.61267 6.62159 6.84302 7.05941 7.53305 7.54947 7.60313 7.79192 8.22685 8.27587 9.17469 9.81376 10.50159 11.38970 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.022244 B = 0.004531 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.472448 B = 6178.078026 C = 6916.660245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C -0.055 4.055 4 C -0.128 4.128 5 C -0.151 4.151 6 C 0.526 3.474 7 O -0.547 6.547 8 N -0.602 5.602 9 C 0.087 3.913 10 C -0.132 4.132 11 C 0.169 3.831 12 H 0.021 0.979 13 C -0.123 4.123 14 H 0.079 0.921 15 C -0.136 4.136 16 C 0.178 3.822 17 N -0.595 5.595 18 C -0.227 4.227 19 H 0.078 0.922 20 C -0.007 4.007 21 N -0.920 5.920 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.125 3.875 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.127 0.873 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.103 0.897 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.050 0.950 43 H 0.041 0.959 44 H 0.252 0.748 45 H 0.087 0.913 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.640 13.052 -9.034 17.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.178 4.178 3 C -0.058 4.058 4 C -0.185 4.185 5 C -0.208 4.208 6 C 0.314 3.686 7 O -0.425 6.425 8 N -0.334 5.334 9 C -0.035 4.035 10 C -0.171 4.171 11 C 0.060 3.940 12 H 0.039 0.961 13 C -0.144 4.144 14 H 0.097 0.903 15 C -0.175 4.175 16 C 0.053 3.947 17 N -0.319 5.319 18 C -0.355 4.355 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.567 5.567 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C 0.004 3.996 27 H 0.120 0.880 28 H 0.122 0.878 29 H 0.144 0.856 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.121 0.879 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.106 0.894 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.591 13.258 -8.521 17.493 hybrid contribution 0.111 -1.177 -0.327 1.226 sum -7.480 12.081 -8.848 16.739 Atomic orbital electron populations 1.24075 0.95953 1.02392 0.99431 1.23101 0.96256 0.97147 1.01339 1.19868 0.95226 0.95764 0.94934 1.21727 0.97961 0.96640 1.02195 1.22165 1.00605 1.03290 0.94720 1.20406 0.80876 0.81066 0.86300 1.90653 1.72963 1.36669 1.42201 1.48227 1.34167 1.28951 1.22014 1.22469 1.02827 0.88845 0.89385 1.21984 1.00808 0.94253 1.00066 1.20722 0.93991 0.87883 0.91356 0.96143 1.22686 0.99963 0.93918 0.97812 0.90302 1.22719 0.97392 1.00062 0.97365 1.21522 0.99189 0.87476 0.86481 1.44205 1.77948 1.00075 1.09706 1.18990 1.35025 0.81900 0.99595 0.90403 1.24802 1.01222 0.97911 0.96373 1.69951 1.49330 1.28730 1.08674 0.86155 0.77631 0.84162 0.78153 1.21657 1.21796 1.20670 1.21624 0.93093 0.97875 0.87044 0.88042 0.87760 0.85568 0.91866 0.91816 0.91682 0.90513 0.91328 0.91859 0.87934 0.91730 0.91425 0.90555 0.92111 0.92326 0.93195 0.94056 0.93758 0.89421 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 13.75 29.01 0.40 -1.36 16 2 C -0.16 -1.75 7.74 -36.03 -0.28 -2.03 16 3 C -0.05 -0.62 0.73 -156.81 -0.11 -0.73 16 4 C -0.13 -1.34 6.50 37.16 0.24 -1.10 16 5 C -0.15 -1.38 8.11 37.16 0.30 -1.07 16 6 C 0.53 7.80 6.46 -10.98 -0.07 7.73 16 7 O -0.55 -9.84 15.35 5.56 0.09 -9.75 16 8 N -0.60 -8.74 2.99 -172.48 -0.52 -9.25 16 9 C 0.09 1.13 4.02 -3.49 -0.01 1.11 16 10 C -0.13 -2.15 5.25 -26.84 -0.14 -2.29 16 11 C 0.17 3.31 2.59 -67.67 -0.18 3.14 16 12 H 0.02 0.43 7.94 -51.93 -0.41 0.01 16 13 C -0.12 -2.20 2.86 -89.19 -0.26 -2.46 16 14 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 15 C -0.14 -2.54 6.53 -25.13 -0.16 -2.71 16 16 C 0.18 4.26 5.43 -1.91 -0.01 4.25 16 17 N -0.59 -14.64 3.35 -162.74 -0.54 -15.19 16 18 C -0.23 -6.09 9.89 -15.06 -0.15 -6.23 16 19 H 0.08 1.99 7.18 -52.48 -0.38 1.62 16 20 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 21 N -0.92 -26.72 10.48 55.49 0.58 -26.14 16 22 Si 0.91 21.71 29.56 -169.99 -5.02 16.68 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.13 1.96 5.94 -3.75 -0.02 1.94 16 27 H 0.10 0.89 8.06 -52.49 -0.42 0.47 16 28 H 0.10 0.90 5.68 -52.49 -0.30 0.60 16 29 H 0.13 1.43 5.20 -52.48 -0.27 1.15 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.52 6.93 -51.93 -0.36 0.16 16 32 H 0.06 0.76 7.88 -51.93 -0.41 0.35 16 33 H 0.08 0.67 4.84 -51.93 -0.25 0.42 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.10 1.11 2.44 -51.93 -0.13 0.98 16 37 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 38 H 0.07 1.16 7.87 -51.93 -0.41 0.75 16 39 H 0.08 1.25 7.63 -51.93 -0.40 0.85 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 1.01 8.11 -51.93 -0.42 0.59 16 42 H 0.05 1.33 7.40 -51.93 -0.38 0.95 16 43 H 0.04 1.09 7.63 -51.93 -0.40 0.69 16 44 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 45 H 0.09 1.42 7.03 -51.93 -0.37 1.06 16 46 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 LS Contribution 341.33 15.07 5.14 5.14 Total: -1.00 -31.06 341.33 -8.21 -39.28 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -7.39 Total: 1.34 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -0.55 Total: -2.10 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: -0.48 Total: -50.59 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.06 -8.21 -39.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036793070.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.040 kcal (2) G-P(sol) polarization free energy of solvation -31.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds