Wall clock time and date at job start Tue Mar 31 2020 07:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 119.99869 * 2 1 4 4 C 1.52995 * 109.47254 * 6.78501 * 3 2 1 5 5 C 1.53004 * 109.46877 * 246.78562 * 3 2 1 6 6 C 1.50705 * 109.47112 * 126.78713 * 3 2 1 7 7 O 1.21281 * 119.99834 * 237.67980 * 6 3 2 8 8 N 1.34773 * 119.99766 * 57.67848 * 6 3 2 9 9 C 1.46595 * 119.68504 * 5.08015 * 8 6 3 10 10 C 1.53958 * 110.57513 * 227.80393 * 9 8 6 11 11 C 1.51807 * 107.27960 * 308.73452 * 10 9 8 12 12 H 1.08996 * 109.29471 * 306.56320 * 11 10 9 13 13 C 1.55673 * 107.49193 * 65.11951 * 11 10 9 14 14 H 1.08999 * 112.49124 * 50.67604 * 13 11 10 15 15 C 1.53744 * 100.10256 * 168.92718 * 13 11 10 16 16 C 1.55291 * 101.84186 * 320.73642 * 15 13 11 17 17 N 1.45467 * 117.16809 * 181.63203 * 11 10 9 18 18 C 1.36936 * 126.40455 * 31.14639 * 17 11 10 19 19 H 1.08003 * 120.00171 * 354.23466 * 18 17 11 20 20 C 1.38809 * 120.00246 * 173.96144 * 18 17 11 21 21 N 1.31618 * 119.99981 * 5.18091 * 20 18 17 22 22 Si 1.86802 * 120.00324 * 185.17757 * 20 18 17 23 23 H 1.48502 * 109.46785 * 94.99612 * 22 20 18 24 24 H 1.48498 * 109.47392 * 214.99872 * 22 20 18 25 25 H 1.48502 * 109.46980 * 335.00064 * 22 20 18 26 26 C 1.47721 * 119.67779 * 185.05972 * 8 6 3 27 27 H 1.07998 * 119.99600 * 180.02562 * 1 2 3 28 28 H 1.07993 * 120.00001 * 359.97438 * 1 2 3 29 29 H 1.08006 * 119.99865 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47472 * 183.87957 * 4 3 2 31 31 H 1.09006 * 109.47204 * 303.88304 * 4 3 2 32 32 H 1.09003 * 109.47167 * 63.87892 * 4 3 2 33 33 H 1.08996 * 109.47397 * 304.84177 * 5 3 2 34 34 H 1.08996 * 109.47256 * 64.84993 * 5 3 2 35 35 H 1.09003 * 109.46438 * 184.84374 * 5 3 2 36 36 H 1.08995 * 109.25776 * 348.08403 * 9 8 6 37 37 H 1.08998 * 109.25777 * 107.56285 * 9 8 6 38 38 H 1.09003 * 109.87861 * 68.40213 * 10 9 8 39 39 H 1.08994 * 109.88605 * 189.41576 * 10 9 8 40 40 H 1.08997 * 110.95395 * 202.60497 * 15 13 11 41 41 H 1.08996 * 110.96132 * 78.87466 * 15 13 11 42 42 H 1.09004 * 109.92253 * 263.13976 * 16 15 13 43 43 H 1.08998 * 109.92132 * 141.82537 * 16 15 13 44 44 H 0.97005 * 120.00528 * 179.97438 * 21 20 18 45 45 H 1.08995 * 110.06856 * 8.75492 * 26 8 6 46 46 H 1.09001 * 110.06841 * 247.17234 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0780 2.4629 0.1704 5 6 2.8109 1.4624 -1.3258 6 6 3.0515 1.3147 1.1379 7 8 3.0011 2.1886 1.9774 8 7 3.9911 0.3522 1.2226 9 6 4.1177 -0.6354 0.1467 10 6 4.1974 -2.0595 0.7262 11 6 5.2809 -2.0537 1.7895 12 1 6.2027 -1.6590 1.3622 13 6 4.8038 -1.1183 2.9387 14 1 3.7952 -1.3551 3.2775 15 6 5.8487 -1.4576 4.0141 16 6 6.0043 -2.9922 3.8343 17 7 5.5630 -3.3149 2.4573 18 6 5.4479 -4.5662 1.9130 19 1 5.0315 -4.6887 0.9241 20 6 5.8716 -5.6766 2.6301 21 7 6.2889 -5.5389 3.8707 22 14 5.8496 -7.3665 1.8343 23 1 7.1892 -7.6635 1.2662 24 1 5.5066 -8.3897 2.8544 25 1 4.8357 -7.3897 0.7495 26 6 4.8838 0.3030 2.3986 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5400 0.9352 0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.6141 3.4095 0.1015 31 1 0.3223 2.4153 -0.6138 32 1 0.5954 2.3889 1.1450 33 1 3.4497 0.5943 -1.4880 34 1 2.0918 1.5419 -2.1410 35 1 3.4236 2.3634 -1.2926 36 1 3.2519 -0.5631 -0.5114 37 1 5.0224 -0.4297 -0.4255 38 1 3.2398 -2.3336 1.1690 39 1 4.4573 -2.7664 -0.0617 40 1 5.4755 -1.2177 5.0097 41 1 6.7904 -0.9447 3.8184 42 1 5.3788 -3.5161 4.5570 43 1 7.0480 -3.2776 3.9663 44 1 6.5847 -6.3149 4.3720 45 1 4.5447 1.0103 3.1554 46 1 5.9069 0.5331 2.1014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036793070.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:00 Heat of formation + Delta-G solvation = 10.582770 kcal Electronic energy + Delta-G solvation = -25116.038599 eV Core-core repulsion = 21813.748726 eV Total energy + Delta-G solvation = -3302.289874 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.96103 -39.98926 -37.51629 -36.81113 -34.49326 -33.03207 -31.91260 -31.17170 -29.87434 -28.08149 -26.79574 -25.84240 -23.97263 -23.76155 -21.88111 -21.34949 -20.85310 -19.66130 -18.37704 -17.69164 -17.21117 -16.97412 -16.49971 -16.06559 -15.74637 -15.69105 -15.27674 -15.00162 -14.71520 -14.27056 -14.06789 -13.75894 -13.50723 -13.31929 -13.24477 -13.10299 -13.06588 -12.93147 -12.69459 -12.54256 -12.49796 -12.12454 -12.10886 -11.98781 -11.76997 -11.66216 -11.57380 -11.27277 -11.01507 -10.79889 -10.69874 -10.17816 -9.68463 -8.85961 -7.83420 -5.17338 1.21710 1.46972 1.48498 1.56957 1.69439 2.00113 2.51424 3.36450 3.37912 3.51330 3.72976 3.82514 3.85292 3.98570 4.00495 4.13214 4.17446 4.21215 4.37489 4.40306 4.48501 4.63353 4.69888 4.74382 4.75215 4.80109 4.80818 4.89779 4.93096 4.93373 5.04554 5.05350 5.09011 5.19957 5.27872 5.32715 5.48025 5.53128 5.56615 5.65542 5.70115 5.75397 5.79664 6.21043 6.40026 7.09759 7.13211 7.80278 8.49819 9.29311 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.022244 B = 0.004531 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.472448 B = 6178.078026 C = 6916.660245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.179 4.179 3 C -0.050 4.050 4 C -0.126 4.126 5 C -0.149 4.149 6 C 0.520 3.480 7 O -0.583 6.583 8 N -0.603 5.603 9 C 0.095 3.905 10 C -0.125 4.125 11 C 0.159 3.841 12 H 0.023 0.977 13 C -0.108 4.108 14 H 0.061 0.939 15 C -0.123 4.123 16 C 0.183 3.817 17 N -0.615 5.615 18 C -0.229 4.229 19 H 0.089 0.911 20 C -0.069 4.069 21 N -0.954 5.954 22 Si 0.973 3.027 23 H -0.289 1.289 24 H -0.300 1.300 25 H -0.264 1.264 26 C 0.133 3.867 27 H 0.110 0.890 28 H 0.116 0.884 29 H 0.122 0.878 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.130 0.870 37 H 0.083 0.917 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.011 0.989 43 H 0.007 0.993 44 H 0.244 0.756 45 H 0.082 0.918 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.798 14.212 -11.683 20.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.197 4.197 3 C -0.053 4.053 4 C -0.184 4.184 5 C -0.206 4.206 6 C 0.310 3.690 7 O -0.464 6.464 8 N -0.335 5.335 9 C -0.026 4.026 10 C -0.164 4.164 11 C 0.052 3.948 12 H 0.041 0.959 13 C -0.129 4.129 14 H 0.079 0.921 15 C -0.161 4.161 16 C 0.058 3.942 17 N -0.339 5.339 18 C -0.358 4.358 19 H 0.107 0.893 20 C -0.262 4.262 21 N -0.604 5.604 22 Si 0.802 3.198 23 H -0.217 1.217 24 H -0.227 1.227 25 H -0.188 1.188 26 C 0.010 3.990 27 H 0.128 0.872 28 H 0.134 0.866 29 H 0.139 0.861 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.066 0.934 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.147 0.853 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.030 0.970 43 H 0.025 0.975 44 H 0.053 0.947 45 H 0.101 0.899 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.764 14.441 -11.218 20.278 hybrid contribution 0.430 -1.508 0.518 1.652 sum -8.334 12.933 -10.700 18.740 Atomic orbital electron populations 1.24277 0.95638 1.03429 0.97338 1.23050 0.96732 0.96610 1.03283 1.19899 0.94616 0.96348 0.94471 1.21738 0.98290 0.96090 1.02239 1.22183 1.01011 1.03434 0.93927 1.21121 0.80873 0.80259 0.86761 1.90635 1.73811 1.38096 1.43819 1.48294 1.33972 1.29302 1.21891 1.22566 1.05073 0.86079 0.88923 1.21902 0.98727 0.96786 0.98944 1.20960 0.95134 0.85949 0.92740 0.95914 1.22502 0.98478 0.95175 0.96707 0.92054 1.22592 0.98832 0.96003 0.98715 1.21282 0.96228 0.90778 0.85916 1.44492 1.77923 1.01198 1.10335 1.19430 1.33590 0.82984 0.99831 0.89288 1.25636 1.01956 1.01627 0.96971 1.70177 1.51049 1.29048 1.10099 0.85123 0.77764 0.79547 0.77335 1.21663 1.22703 1.18795 1.21468 0.94208 0.95665 0.87634 0.87171 0.86607 0.86067 0.92378 0.89102 0.93354 0.90002 0.89156 0.91989 0.85258 0.89885 0.92614 0.90382 0.90620 0.90401 0.97016 0.97453 0.94652 0.89917 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 13.75 67.78 0.93 -1.85 16 2 C -0.18 -3.41 7.74 25.64 0.20 -3.21 16 3 C -0.05 -1.01 0.73 -53.67 -0.04 -1.04 16 4 C -0.13 -2.35 6.50 71.98 0.47 -1.88 16 5 C -0.15 -2.18 8.11 71.98 0.58 -1.59 16 6 C 0.52 14.52 6.46 87.66 0.57 15.08 16 7 O -0.58 -20.44 15.35 -3.03 -0.05 -20.48 16 8 N -0.60 -16.31 2.99 -818.01 -2.45 -18.76 16 9 C 0.10 2.20 4.02 86.68 0.35 2.54 16 10 C -0.12 -3.86 5.25 30.53 0.16 -3.70 16 11 C 0.16 6.12 2.59 45.72 0.12 6.24 16 12 H 0.02 0.90 7.94 -2.39 -0.02 0.88 16 13 C -0.11 -3.80 2.86 -9.87 -0.03 -3.82 16 14 H 0.06 2.37 8.14 -2.39 -0.02 2.36 16 15 C -0.12 -4.56 6.53 31.63 0.21 -4.36 16 16 C 0.18 9.12 5.43 86.85 0.47 9.59 16 17 N -0.62 -30.74 3.35 -668.77 -2.24 -32.98 16 18 C -0.23 -12.40 9.89 84.03 0.83 -11.57 16 19 H 0.09 4.49 7.18 -2.91 -0.02 4.47 16 20 C -0.07 -3.90 5.49 84.86 0.47 -3.44 16 21 N -0.95 -57.73 10.48 21.65 0.23 -57.50 16 22 Si 0.97 45.19 29.56 68.60 2.03 47.22 16 23 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 24 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 25 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 26 C 0.13 3.93 5.94 85.90 0.51 4.45 16 27 H 0.11 1.61 8.06 -2.91 -0.02 1.59 16 28 H 0.12 1.61 5.68 -2.91 -0.02 1.59 16 29 H 0.12 2.42 5.20 -2.91 -0.02 2.41 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.09 1.17 6.93 -2.38 -0.02 1.15 16 32 H 0.05 1.06 7.88 -2.39 -0.02 1.04 16 33 H 0.08 1.10 4.84 -2.39 -0.01 1.09 16 34 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.13 2.36 2.44 -2.39 -0.01 2.35 16 37 H 0.08 1.68 8.09 -2.39 -0.02 1.66 16 38 H 0.06 1.86 7.87 -2.39 -0.02 1.84 16 39 H 0.08 2.40 7.63 -2.39 -0.02 2.38 16 40 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.08 2.61 8.11 -2.39 -0.02 2.59 16 42 H 0.01 0.65 7.40 -2.38 -0.02 0.63 16 43 H 0.01 0.40 7.63 -2.39 -0.02 0.38 16 44 H 0.24 14.47 8.31 -92.70 -0.77 13.69 16 45 H 0.08 2.59 7.03 -2.39 -0.02 2.57 16 46 H 0.08 2.22 8.08 -2.39 -0.02 2.20 16 Total: -1.00 -69.68 341.33 4.27 -65.41 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.96 Total: 15.66 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 5.79 Total: 1.43 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -4.46 Total: -109.24 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.05 Total: -20.48 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -69.68 4.27 -65.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036793070.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.991 kcal (2) G-P(sol) polarization free energy of solvation -69.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds