Wall clock time and date at job start Tue Mar 31 2020 06:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46807 * 2 1 4 4 C 1.50703 * 115.54668 * 294.66518 * 3 2 1 5 5 O 1.21288 * 119.99702 * 100.70746 * 4 3 2 6 6 N 1.34773 * 120.00427 * 280.70315 * 4 3 2 7 7 C 1.46599 * 119.68181 * 355.05473 * 6 4 3 8 8 C 1.53951 * 110.57642 * 132.19769 * 7 6 4 9 9 C 1.51514 * 107.34836 * 51.05284 * 8 7 6 10 10 H 1.08998 * 108.80934 * 53.43814 * 9 8 7 11 11 C 1.55371 * 107.79215 * 295.13970 * 9 8 7 12 12 H 1.08998 * 111.51293 * 308.81871 * 11 9 8 13 13 C 1.53737 * 100.22007 * 190.91448 * 11 9 8 14 14 C 1.55291 * 101.84349 * 39.09780 * 13 11 9 15 15 N 1.45467 * 117.35017 * 178.09501 * 9 8 7 16 16 C 1.36936 * 126.40699 * 329.39493 * 15 9 8 17 17 H 1.08000 * 119.99284 * 355.29744 * 16 15 9 18 18 C 1.38813 * 120.00271 * 175.29519 * 16 15 9 19 19 N 1.31619 * 119.99659 * 5.72058 * 18 16 15 20 20 Si 1.86801 * 119.99940 * 185.72376 * 18 16 15 21 21 H 1.48501 * 109.47146 * 94.99526 * 20 18 16 22 22 H 1.48495 * 109.46895 * 214.99635 * 20 18 16 23 23 H 1.48500 * 109.47138 * 334.99699 * 20 18 16 24 24 C 1.47717 * 119.68512 * 175.07200 * 6 4 3 25 25 C 1.52999 * 117.51920 * 80.37006 * 3 2 1 26 26 C 1.52998 * 117.49765 * 148.99945 * 3 2 1 27 27 H 1.08994 * 109.47160 * 65.24520 * 1 2 3 28 28 H 1.09004 * 109.46844 * 185.24468 * 1 2 3 29 29 H 1.09003 * 109.47168 * 305.24219 * 1 2 3 30 30 H 1.08999 * 109.47526 * 240.00023 * 2 1 3 31 31 H 1.08998 * 109.47163 * 119.99814 * 2 1 3 32 32 H 1.08994 * 109.25565 * 11.90829 * 7 6 4 33 33 H 1.09007 * 109.22161 * 252.46164 * 7 6 4 34 34 H 1.08999 * 109.87846 * 291.58762 * 8 7 6 35 35 H 1.08997 * 109.94189 * 170.54829 * 8 7 6 36 36 H 1.09007 * 110.95346 * 157.23492 * 13 11 9 37 37 H 1.09000 * 110.95670 * 280.95827 * 13 11 9 38 38 H 1.08996 * 109.91869 * 218.16864 * 14 13 11 39 39 H 1.08997 * 110.08657 * 96.95493 * 14 13 11 40 40 H 0.96995 * 119.99380 * 179.97438 * 19 18 16 41 41 H 1.09001 * 110.06780 * 112.82403 * 24 6 4 42 42 H 1.08997 * 110.06951 * 351.25285 * 24 6 4 43 43 H 1.09005 * 117.49522 * 214.96994 * 25 3 2 44 44 H 1.08993 * 117.49960 * 359.97438 * 25 3 2 45 45 H 1.08999 * 117.50011 * 359.97438 * 26 3 2 46 46 H 1.09007 * 117.49464 * 144.96968 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.7216 2.2444 -1.2356 5 8 0.8009 3.0340 -1.2256 6 7 2.4598 2.0843 -2.3518 7 6 3.6366 1.2104 -2.3246 8 6 3.6290 0.2549 -3.5317 9 6 3.4209 1.0976 -4.7736 10 1 4.1698 1.8894 -4.7905 11 6 2.0064 1.7340 -4.6839 12 1 1.2432 0.9843 -4.4753 13 6 1.8672 2.2913 -6.1100 14 6 2.5198 1.1653 -6.9573 15 7 3.4204 0.4099 -6.0554 16 6 4.1210 -0.7240 -6.3697 17 1 4.8085 -1.1497 -5.6538 18 6 3.9474 -1.3261 -7.6084 19 7 3.1971 -0.7476 -8.5220 20 14 4.7787 -2.9575 -7.9784 21 1 3.8334 -4.0688 -7.7014 22 1 5.1816 -2.9949 -9.4072 23 1 5.9819 -3.1058 -7.1208 24 6 2.0757 2.7912 -3.5906 25 6 2.0615 2.1847 1.3378 26 6 3.3722 1.7209 0.6990 27 1 -0.3633 0.4303 -0.9332 28 1 -0.3633 -1.0234 0.0939 29 1 -0.3634 0.5930 0.8393 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.6298 0.6269 -1.4040 33 1 4.5385 1.8220 -2.3558 34 1 2.8156 -0.4635 -3.4305 35 1 4.5817 -0.2707 -3.5957 36 1 0.8183 2.4218 -6.3768 37 1 2.4148 3.2275 -6.2179 38 1 3.0934 1.6012 -7.7752 39 1 1.7511 0.5026 -7.3548 40 1 3.0762 -1.1682 -9.3876 41 1 2.8265 3.5404 -3.8418 42 1 1.1016 3.2637 -3.4649 43 1 1.8454 3.2530 1.3241 44 1 1.7120 1.6455 2.2181 45 1 3.8851 0.8764 1.1592 46 1 4.0185 2.4838 0.2649 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036813343.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:33 Heat of formation + Delta-G solvation = 12.916651 kcal Electronic energy + Delta-G solvation = -24999.936686 eV Core-core repulsion = 21697.748017 eV Total energy + Delta-G solvation = -3302.188669 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -40.62121 -38.66528 -36.88411 -35.32605 -32.65932 -32.02650 -31.54249 -29.65560 -28.19303 -25.33691 -24.63723 -23.59691 -22.74545 -22.19442 -21.64593 -20.07064 -19.58181 -18.35536 -16.81591 -16.22870 -15.99501 -15.64821 -15.08771 -14.64309 -14.46467 -14.08992 -13.99883 -13.76086 -13.33269 -13.14954 -12.95124 -12.53336 -12.45881 -12.27621 -11.76286 -11.71024 -11.62729 -11.44092 -11.43143 -11.25111 -10.86298 -10.80837 -10.70511 -10.52364 -10.22785 -10.13732 -10.02912 -9.89031 -9.64747 -9.52722 -9.40411 -8.61400 -8.46840 -6.84737 -5.73710 -3.06013 2.67609 3.03911 3.38273 3.43290 3.45655 3.52201 4.36154 4.47159 4.50303 4.64981 4.78974 5.04373 5.12202 5.22782 5.25654 5.33467 5.36093 5.40545 5.43752 5.54316 5.59184 5.63320 5.66206 5.79990 5.82003 5.85937 5.89840 5.91977 6.00553 6.05667 6.15766 6.18425 6.21883 6.25506 6.37277 6.51277 6.61926 6.64663 6.85527 7.06564 7.52151 7.54635 7.62791 7.80099 8.23408 8.28812 9.17841 9.81732 10.50408 11.38998 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.021745 B = 0.004449 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.356647 B = 6292.228104 C = 6870.612977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 C -0.151 4.151 4 C 0.550 3.450 5 O -0.545 6.545 6 N -0.601 5.601 7 C 0.110 3.890 8 C -0.129 4.129 9 C 0.168 3.832 10 H 0.018 0.982 11 C -0.123 4.123 12 H 0.079 0.921 13 C -0.136 4.136 14 C 0.175 3.825 15 N -0.595 5.595 16 C -0.226 4.226 17 H 0.078 0.922 18 C -0.007 4.007 19 N -0.919 5.919 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.127 3.873 25 C -0.146 4.146 26 C -0.166 4.166 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.036 0.964 39 H 0.057 0.943 40 H 0.252 0.748 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.104 0.896 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.987 4.257 17.052 17.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 C -0.154 4.154 4 C 0.337 3.663 5 O -0.423 6.423 6 N -0.333 5.333 7 C -0.013 4.013 8 C -0.169 4.169 9 C 0.059 3.941 10 H 0.036 0.964 11 C -0.144 4.144 12 H 0.098 0.902 13 C -0.174 4.174 14 C 0.051 3.949 15 N -0.319 5.319 16 C -0.354 4.354 17 H 0.096 0.904 18 C -0.203 4.203 19 N -0.567 5.567 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C 0.005 3.995 25 C -0.183 4.183 26 C -0.203 4.203 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.054 0.946 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.086 0.914 42 H 0.106 0.894 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.122 0.878 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.414 4.524 16.820 17.475 hybrid contribution 0.528 -0.964 -0.411 1.174 sum -0.885 3.560 16.409 16.814 Atomic orbital electron populations 1.21703 0.94924 1.01437 1.02551 1.21048 0.96626 0.91260 1.02829 1.21451 1.03348 0.97649 0.92982 1.19541 0.81548 0.81789 0.83420 1.90659 1.30726 1.37105 1.83761 1.48258 1.28236 1.46370 1.10471 1.21866 0.86945 0.92554 0.99959 1.21896 1.02853 0.97930 0.94188 1.20630 0.93244 0.93258 0.86927 0.96441 1.22623 1.00000 0.97749 0.94006 0.90246 1.22706 1.00360 0.99464 0.94910 1.21553 0.92916 0.89845 0.90582 1.44202 1.52692 1.28743 1.06281 1.18990 1.17460 0.99679 0.99299 0.90395 1.24807 1.00108 0.98904 0.96478 1.69949 1.42917 1.38471 1.05341 0.86163 0.78664 0.83978 0.77365 1.21678 1.21787 1.20656 1.21610 1.01301 0.94223 0.82383 1.22979 0.99961 1.00988 0.94400 1.23179 0.90303 1.03811 1.03041 0.92523 0.92505 0.92473 0.90772 0.90983 0.89637 0.91928 0.91447 0.90607 0.92078 0.92363 0.94589 0.92459 0.93765 0.91412 0.89408 0.88300 0.88051 0.87786 0.88389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.71 37.16 0.36 -1.27 16 2 C -0.08 -0.83 5.54 -26.73 -0.15 -0.97 16 3 C -0.15 -1.71 0.73 -155.66 -0.11 -1.82 16 4 C 0.55 8.18 6.34 -10.99 -0.07 8.11 16 5 O -0.54 -9.87 16.37 5.55 0.09 -9.78 16 6 N -0.60 -8.80 3.00 -172.49 -0.52 -9.32 16 7 C 0.11 1.45 5.78 -3.49 -0.02 1.43 16 8 C -0.13 -2.14 5.50 -26.99 -0.15 -2.29 16 9 C 0.17 3.30 2.57 -67.98 -0.17 3.13 16 10 H 0.02 0.37 7.92 -51.93 -0.41 -0.04 16 11 C -0.12 -2.20 2.86 -89.37 -0.26 -2.46 16 12 H 0.08 1.54 8.12 -51.93 -0.42 1.12 16 13 C -0.14 -2.52 6.54 -25.13 -0.16 -2.69 16 14 C 0.18 4.20 5.48 -1.91 -0.01 4.19 16 15 N -0.59 -14.67 3.35 -163.09 -0.55 -15.22 16 16 C -0.23 -6.08 9.85 -15.06 -0.15 -6.22 16 17 H 0.08 2.01 7.28 -52.49 -0.38 1.62 16 18 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 19 N -0.92 -26.71 10.46 55.49 0.58 -26.13 16 20 Si 0.91 21.71 29.56 -169.99 -5.02 16.69 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 C 0.13 1.98 5.94 -3.76 -0.02 1.96 16 25 C -0.15 -1.41 9.87 -26.73 -0.26 -1.68 16 26 C -0.17 -1.48 8.27 -26.73 -0.22 -1.70 16 27 H 0.06 0.75 7.88 -51.93 -0.41 0.34 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.82 7.45 -51.93 -0.39 0.43 16 31 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 32 H 0.09 0.95 4.51 -51.93 -0.23 0.72 16 33 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 34 H 0.07 1.18 8.12 -51.93 -0.42 0.76 16 35 H 0.08 1.27 7.64 -51.93 -0.40 0.87 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.06 1.00 8.11 -51.93 -0.42 0.58 16 38 H 0.04 0.94 7.86 -51.93 -0.41 0.53 16 39 H 0.06 1.53 7.10 -51.93 -0.37 1.16 16 40 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 42 H 0.09 1.42 7.03 -51.93 -0.37 1.06 16 43 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 353.14 15.07 5.32 5.32 Total: -1.00 -30.97 353.14 -9.57 -40.54 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -7.98 Total: 0.46 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -1.49 Total: -2.57 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: -0.48 Total: -50.66 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.97 -9.57 -40.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036813343.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.461 kcal (2) G-P(sol) polarization free energy of solvation -30.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds