Wall clock time and date at job start Tue Mar 31 2020 06:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46941 * 2 1 4 4 C 1.50692 * 115.55111 * 294.87433 * 3 2 1 5 5 O 1.21285 * 120.00088 * 113.65467 * 4 3 2 6 6 N 1.34783 * 119.99950 * 293.65666 * 4 3 2 7 7 C 1.46587 * 119.68421 * 354.89091 * 6 4 3 8 8 C 1.53957 * 110.58778 * 227.81700 * 7 6 4 9 9 C 1.51521 * 107.33999 * 308.95305 * 8 7 6 10 10 H 1.09000 * 108.81485 * 306.55162 * 9 8 7 11 11 C 1.55359 * 107.78637 * 64.85522 * 9 8 7 12 12 H 1.09000 * 111.50613 * 51.15740 * 11 9 8 13 13 C 1.53737 * 100.22724 * 169.05617 * 11 9 8 14 14 C 1.55288 * 101.84220 * 320.91333 * 13 11 9 15 15 N 1.45474 * 117.33870 * 181.89299 * 9 8 7 16 16 C 1.36934 * 126.40358 * 30.67086 * 15 9 8 17 17 H 1.08002 * 120.00331 * 359.97438 * 16 15 9 18 18 C 1.38811 * 119.99826 * 180.02562 * 16 15 9 19 19 N 1.31615 * 120.00082 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99797 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47246 * 60.00489 * 20 18 16 22 22 H 1.48505 * 109.46868 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47271 * 299.99951 * 20 18 16 24 24 C 1.47720 * 119.68120 * 174.89213 * 6 4 3 25 25 C 1.53005 * 117.49743 * 80.54414 * 3 2 1 26 26 C 1.52999 * 117.49811 * 149.20363 * 3 2 1 27 27 H 1.09002 * 109.47601 * 65.27234 * 1 2 3 28 28 H 1.08998 * 109.47272 * 185.28119 * 1 2 3 29 29 H 1.08998 * 109.47279 * 305.27920 * 1 2 3 30 30 H 1.08992 * 109.47032 * 240.00035 * 2 1 3 31 31 H 1.09003 * 109.46836 * 119.99920 * 2 1 3 32 32 H 1.08997 * 109.25442 * 107.53007 * 7 6 4 33 33 H 1.09001 * 109.25384 * 348.10189 * 7 6 4 34 34 H 1.08995 * 109.88004 * 189.49566 * 8 7 6 35 35 H 1.08997 * 109.88181 * 68.40690 * 8 7 6 36 36 H 1.09008 * 110.95131 * 79.04873 * 13 11 9 37 37 H 1.08994 * 110.95572 * 202.76958 * 13 11 9 38 38 H 1.09002 * 109.91854 * 141.82593 * 14 13 11 39 39 H 1.08997 * 109.91519 * 263.12816 * 14 13 11 40 40 H 0.97001 * 120.00455 * 179.97438 * 19 18 16 41 41 H 1.08998 * 110.07068 * 8.73984 * 24 6 4 42 42 H 1.08998 * 110.06922 * 247.15521 * 24 6 4 43 43 H 1.08995 * 117.49720 * 215.00074 * 25 3 2 44 44 H 1.09005 * 117.49831 * 0.02562 * 25 3 2 45 45 H 1.09005 * 117.49852 * 359.97438 * 26 3 2 46 46 H 1.08999 * 117.50328 * 144.99594 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.7175 2.2460 -1.2334 5 8 0.9635 3.1932 -1.1602 6 7 2.2668 1.9119 -2.4180 7 6 3.2625 0.8379 -2.4793 8 6 4.4884 1.2822 -3.2979 9 6 3.9776 1.8289 -4.6155 10 1 3.3332 1.0823 -5.0797 11 6 3.1441 3.1037 -4.3092 12 1 3.6964 3.8002 -3.6782 13 6 2.9641 3.6603 -5.7309 14 6 4.3534 3.3747 -6.3632 15 7 4.9683 2.2760 -5.5823 16 6 6.2327 1.7748 -5.7413 17 1 6.5769 0.9678 -5.1114 18 6 7.0724 2.3046 -6.7113 19 7 6.6533 3.2884 -7.4786 20 14 8.7975 1.6213 -6.9276 21 1 8.7191 0.1785 -7.2703 22 1 9.4859 2.3526 -8.0215 23 1 9.5586 1.7892 -5.6637 24 6 1.8596 2.6316 -3.6421 25 6 2.0652 2.1829 1.3388 26 6 3.3746 1.7200 0.6948 27 1 -0.3634 0.4299 -0.9334 28 1 -0.3634 -1.0233 0.0946 29 1 -0.3634 0.5935 0.8389 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.8165 -0.0395 -2.9476 33 1 3.5789 0.5829 -1.4679 34 1 5.1422 0.4291 -3.4790 35 1 5.0316 2.0591 -2.7599 36 1 2.1767 3.1255 -6.2621 37 1 2.7590 4.7305 -5.7075 38 1 4.2326 3.0692 -7.4025 39 1 4.9779 4.2661 -6.3054 40 1 7.2402 3.6589 -8.1562 41 1 1.2363 3.4874 -3.3830 42 1 1.3173 1.9602 -4.3078 43 1 1.8486 3.2511 1.3273 44 1 1.7189 1.6421 2.2196 45 1 3.8891 0.8750 1.1524 46 1 4.0193 2.4837 0.2598 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036813346.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:55 Heat of formation + Delta-G solvation = 12.999511 kcal Electronic energy + Delta-G solvation = -24918.188966 eV Core-core repulsion = 21616.003890 eV Total energy + Delta-G solvation = -3302.185076 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.61771 -38.67162 -36.85633 -35.34282 -32.67183 -32.07789 -31.54071 -29.65464 -28.19760 -25.30527 -24.65845 -23.66496 -22.62829 -22.27291 -21.63343 -20.06727 -19.56752 -18.39843 -16.82824 -16.22080 -15.97525 -15.56146 -15.19414 -14.72614 -14.27466 -14.17959 -13.96795 -13.85397 -13.39672 -13.05751 -12.98862 -12.61494 -12.42589 -12.30851 -11.76652 -11.70565 -11.60288 -11.48536 -11.42012 -11.30457 -10.83760 -10.80153 -10.70857 -10.51652 -10.20702 -10.15678 -10.05256 -9.88480 -9.63011 -9.53610 -9.40925 -8.62780 -8.46366 -6.84281 -5.71983 -3.05272 2.65741 3.03535 3.39103 3.43411 3.44936 3.57956 4.36142 4.47801 4.50776 4.64630 4.76122 5.03280 5.12658 5.15751 5.26315 5.27427 5.36399 5.38164 5.47073 5.53021 5.58760 5.63581 5.69160 5.73474 5.80192 5.83571 5.88613 5.93438 5.97742 6.04544 6.08741 6.17089 6.19587 6.24842 6.37558 6.51974 6.62508 6.64753 6.85725 7.07112 7.53565 7.55077 7.61431 7.80267 8.23928 8.29078 9.18737 9.82474 10.50856 11.40482 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.023824 B = 0.004250 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.998792 B = 6587.102756 C = 7184.073195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 C -0.156 4.156 4 C 0.550 3.450 5 O -0.546 6.546 6 N -0.601 5.601 7 C 0.111 3.889 8 C -0.129 4.129 9 C 0.168 3.832 10 H 0.019 0.981 11 C -0.123 4.123 12 H 0.079 0.921 13 C -0.136 4.136 14 C 0.177 3.823 15 N -0.595 5.595 16 C -0.227 4.227 17 H 0.078 0.922 18 C -0.007 4.007 19 N -0.922 5.922 20 Si 0.910 3.090 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.126 3.874 25 C -0.145 4.145 26 C -0.161 4.161 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.038 0.962 39 H 0.054 0.946 40 H 0.253 0.747 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.101 0.899 44 H 0.100 0.900 45 H 0.104 0.896 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.741 -5.811 14.369 18.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.120 4.120 3 C -0.159 4.159 4 C 0.338 3.662 5 O -0.424 6.424 6 N -0.333 5.333 7 C -0.012 4.012 8 C -0.168 4.168 9 C 0.059 3.941 10 H 0.036 0.964 11 C -0.144 4.144 12 H 0.097 0.903 13 C -0.175 4.175 14 C 0.053 3.947 15 N -0.319 5.319 16 C -0.355 4.355 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.569 5.569 20 Si 0.740 3.260 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.004 3.996 25 C -0.182 4.182 26 C -0.199 4.199 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.122 0.878 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.928 -5.281 14.209 18.120 hybrid contribution 1.082 -0.376 -0.294 1.183 sum -8.846 -5.657 13.915 17.432 Atomic orbital electron populations 1.21713 0.95086 1.01438 1.02424 1.21109 0.96450 0.91601 1.02851 1.21461 1.03798 0.97452 0.93152 1.19526 0.79842 0.83418 0.83463 1.90657 1.37326 1.28940 1.85448 1.48221 1.41140 1.36747 1.07223 1.21855 0.89107 0.88896 1.01352 1.21897 0.96118 1.01835 0.97000 1.20629 0.90963 0.93190 0.89302 0.96390 1.22617 0.95875 0.99228 0.96632 0.90290 1.22717 1.00269 0.99681 0.94841 1.21528 0.87766 0.91812 0.93595 1.44199 1.11423 1.39476 1.36817 1.18941 0.87781 1.13866 1.14883 0.90460 1.24786 0.98482 0.98583 0.98518 1.69927 1.35609 1.27657 1.23690 0.86238 0.84280 0.78151 0.77317 1.21205 1.21627 1.21216 1.21618 0.96944 0.96576 0.84456 1.22988 0.99957 1.01241 0.94038 1.23152 0.90153 1.03858 1.02703 0.92743 0.92502 0.92388 0.90818 0.90973 0.91949 0.89747 0.90575 0.91484 0.92359 0.92084 0.94382 0.92741 0.93708 0.89328 0.91372 0.88019 0.88114 0.87785 0.88244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.71 37.16 0.36 -1.04 16 2 C -0.08 -0.76 5.47 -26.73 -0.15 -0.90 16 3 C -0.16 -1.75 0.75 -155.66 -0.12 -1.86 16 4 C 0.55 8.20 6.41 -10.99 -0.07 8.13 16 5 O -0.55 -9.95 16.08 5.55 0.09 -9.86 16 6 N -0.60 -8.81 3.00 -172.50 -0.52 -9.33 16 7 C 0.11 1.47 5.00 -3.50 -0.02 1.45 16 8 C -0.13 -2.16 5.48 -26.98 -0.15 -2.30 16 9 C 0.17 3.32 2.57 -67.98 -0.17 3.14 16 10 H 0.02 0.38 7.92 -51.93 -0.41 -0.03 16 11 C -0.12 -2.22 2.86 -89.37 -0.26 -2.47 16 12 H 0.08 1.55 8.12 -51.93 -0.42 1.13 16 13 C -0.14 -2.55 6.54 -25.14 -0.16 -2.71 16 14 C 0.18 4.27 5.45 -1.92 -0.01 4.26 16 15 N -0.59 -14.74 3.35 -163.10 -0.55 -15.29 16 16 C -0.23 -6.11 9.88 -15.06 -0.15 -6.26 16 17 H 0.08 1.99 7.21 -52.49 -0.38 1.61 16 18 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 19 N -0.92 -26.85 10.44 55.49 0.58 -26.27 16 20 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 C 0.13 1.97 5.97 -3.76 -0.02 1.95 16 25 C -0.14 -1.47 9.78 -26.69 -0.26 -1.73 16 26 C -0.16 -1.58 8.82 -26.69 -0.24 -1.82 16 27 H 0.05 0.61 7.87 -51.93 -0.41 0.20 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.67 6.42 -51.93 -0.33 0.34 16 31 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 32 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 33 H 0.08 0.94 4.89 -51.93 -0.25 0.69 16 34 H 0.08 1.27 7.62 -51.93 -0.40 0.88 16 35 H 0.07 1.19 8.12 -51.93 -0.42 0.77 16 36 H 0.06 1.01 8.12 -51.92 -0.42 0.58 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 39 H 0.05 1.46 7.21 -51.93 -0.37 1.09 16 40 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.09 1.44 6.98 -51.93 -0.36 1.08 16 42 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 43 H 0.10 1.18 8.01 -51.93 -0.42 0.76 16 44 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 351.59 15.07 5.30 5.30 Total: -1.00 -31.12 351.59 -9.56 -40.68 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -7.93 Total: 0.48 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -1.51 Total: -2.48 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: -0.48 Total: -50.88 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.12 -9.56 -40.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036813346.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.681 kcal (2) G-P(sol) polarization free energy of solvation -31.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds