Wall clock time and date at job start Tue Mar 31 2020 07:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50699 * 119.99756 * 2 1 4 4 C 1.52996 * 109.47507 * 0.02562 * 3 2 1 5 5 C 1.53001 * 109.47291 * 239.99983 * 3 2 1 6 6 C 1.50701 * 109.46675 * 120.00599 * 3 2 1 7 7 O 1.21287 * 120.00369 * 358.78346 * 6 3 2 8 8 N 1.34782 * 120.00112 * 178.78360 * 6 3 2 9 9 C 1.46952 * 120.44046 * 357.75778 * 8 6 3 10 10 C 1.53595 * 108.51727 * 125.72066 * 9 8 6 11 11 H 1.08996 * 110.59191 * 172.17976 * 10 9 8 12 12 C 1.53368 * 109.19878 * 294.10120 * 10 9 8 13 13 C 1.54669 * 108.58532 * 60.06869 * 12 10 9 14 14 C 1.53018 * 109.72382 * 60.84800 * 13 12 10 15 15 C 1.53374 * 109.24548 * 299.33178 * 14 13 12 16 16 H 1.08997 * 111.08796 * 177.84722 * 15 14 13 17 17 C 1.46941 * 120.44440 * 177.73984 * 8 6 3 18 18 N 1.47569 * 107.76851 * 51.16458 * 10 9 8 19 19 C 1.36931 * 121.61270 * 120.44703 * 18 10 9 20 20 H 1.08007 * 120.00055 * 333.36226 * 19 18 10 21 21 C 1.38814 * 119.99975 * 153.35972 * 19 18 10 22 22 N 1.31618 * 120.00075 * 328.04679 * 21 19 18 23 23 Si 1.86801 * 119.99925 * 148.04934 * 21 19 18 24 24 H 1.48501 * 109.47250 * 59.99713 * 23 21 19 25 25 H 1.48493 * 109.47108 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47131 * 300.00196 * 23 21 19 27 27 H 1.08000 * 119.99776 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.00250 * 179.97438 * 1 2 3 29 29 H 1.08000 * 119.99776 * 180.02562 * 2 1 3 30 30 H 1.08995 * 109.47251 * 186.60329 * 4 3 2 31 31 H 1.09000 * 109.46981 * 306.60177 * 4 3 2 32 32 H 1.08999 * 109.47484 * 66.59969 * 4 3 2 33 33 H 1.09001 * 109.46920 * 314.04082 * 5 3 2 34 34 H 1.09002 * 109.46920 * 74.03700 * 5 3 2 35 35 H 1.08998 * 109.47452 * 194.03791 * 5 3 2 36 36 H 1.08997 * 109.62560 * 6.01065 * 9 8 6 37 37 H 1.09001 * 109.62366 * 245.43117 * 9 8 6 38 38 H 1.08997 * 109.50177 * 180.52190 * 12 10 9 39 39 H 1.08995 * 109.50811 * 300.64512 * 12 10 9 40 40 H 1.09001 * 109.52155 * 300.73035 * 13 12 10 41 41 H 1.09000 * 109.33739 * 180.84934 * 13 12 10 42 42 H 1.09000 * 109.50847 * 179.40467 * 14 13 12 43 43 H 1.09000 * 109.54517 * 59.28159 * 14 13 12 44 44 H 1.09006 * 109.62447 * 353.97368 * 17 8 6 45 45 H 1.09008 * 109.62499 * 114.34803 * 17 8 6 46 46 H 0.96992 * 120.00002 * 354.30184 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4680 0.0006 5 6 2.9431 1.3862 -1.2492 6 6 2.9300 1.3848 1.2304 7 8 2.9185 0.4816 2.0398 8 7 3.7177 2.4598 1.4315 9 6 3.7763 3.5370 0.4336 10 6 3.4595 4.8674 1.1327 11 1 3.6277 5.7054 0.4563 12 6 2.0043 4.8486 1.6169 13 6 1.8302 3.6753 2.6094 14 6 2.7553 3.8744 3.8119 15 6 4.2110 3.9060 3.3300 16 1 4.8950 4.0847 4.1597 17 6 4.5290 2.5706 2.6516 18 7 4.3327 4.9727 2.3175 19 6 5.2173 6.0071 2.4676 20 1 5.6125 6.5103 1.5974 21 6 5.6062 6.4091 3.7381 22 7 4.7660 6.3083 4.7461 23 14 7.3218 7.0933 4.0170 24 1 7.5125 8.3069 3.1826 25 1 7.4871 7.4461 5.4499 26 1 8.3301 6.0702 3.6401 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.6091 3.4076 -0.1175 31 1 0.3672 2.3462 -0.8241 32 1 0.5233 2.4788 0.9440 33 1 3.4725 0.4428 -1.3827 34 1 2.3185 1.5790 -2.1215 35 1 3.6650 2.1947 -1.1335 36 1 3.0416 3.3508 -0.3497 37 1 4.7754 3.5801 -0.0003 38 1 1.7713 5.7945 2.1058 39 1 1.3392 4.7048 0.7655 40 1 2.0789 2.7377 2.1122 41 1 0.7954 3.6413 2.9501 42 1 2.6221 3.0512 4.5139 43 1 2.5146 4.8161 4.3051 44 1 4.2889 1.7492 3.3268 45 1 5.5871 2.5339 2.3923 46 1 3.8499 6.0315 4.5881 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039826790.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:24 Heat of formation + Delta-G solvation = 59.082952 kcal Electronic energy + Delta-G solvation = -26601.573903 eV Core-core repulsion = 23301.387155 eV Total energy + Delta-G solvation = -3300.186748 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.41364 -38.20865 -36.35899 -34.29800 -32.86460 -32.24266 -30.99530 -30.00037 -27.52845 -26.85531 -25.69524 -24.32123 -22.95414 -21.72700 -21.42683 -20.25458 -18.71298 -18.45631 -16.91351 -16.22594 -16.17814 -15.26618 -14.92798 -14.49587 -14.09608 -14.09565 -13.79584 -13.69473 -13.48510 -13.10092 -12.74795 -12.35011 -12.31765 -12.29799 -12.00785 -11.99193 -11.97104 -11.31252 -11.07853 -10.94038 -10.78970 -10.66675 -10.47116 -10.31976 -10.24558 -10.13772 -9.91453 -9.65083 -9.52253 -9.31853 -9.06183 -8.41356 -7.95859 -6.83364 -6.15495 -3.24285 2.24822 2.89384 3.41624 3.47014 3.51797 3.69033 4.51804 4.52943 4.67751 4.92042 4.95434 5.04025 5.25264 5.33367 5.43035 5.45948 5.55207 5.56826 5.57231 5.68151 5.71056 5.72700 5.74261 5.84089 5.92027 6.01719 6.05394 6.12946 6.19598 6.30496 6.33188 6.36065 6.46531 6.51749 6.59758 6.71320 6.74121 6.76226 6.83996 6.91984 7.14955 7.19604 7.81723 7.93786 8.47841 8.51866 9.03008 9.76837 10.26548 11.13671 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.029237 B = 0.005424 C = 0.005383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.468379 B = 5161.328986 C = 5200.109284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 C -0.056 4.056 4 C -0.171 4.171 5 C -0.156 4.156 6 C 0.526 3.474 7 O -0.550 6.550 8 N -0.587 5.587 9 C 0.072 3.928 10 C 0.151 3.849 11 H 0.078 0.922 12 C -0.133 4.133 13 C -0.141 4.141 14 C -0.124 4.124 15 C 0.162 3.838 16 H 0.100 0.900 17 C 0.098 3.902 18 N -0.583 5.583 19 C -0.357 4.357 20 H 0.057 0.943 21 C -0.016 4.016 22 N -0.903 5.903 23 Si 1.055 2.945 24 H -0.293 1.293 25 H -0.286 1.286 26 H -0.294 1.294 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.089 0.911 41 H 0.033 0.967 42 H 0.045 0.955 43 H 0.063 0.937 44 H 0.081 0.919 45 H 0.062 0.938 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.323 -7.757 -11.317 15.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.135 4.135 3 C -0.059 4.059 4 C -0.227 4.227 5 C -0.213 4.213 6 C 0.314 3.686 7 O -0.428 6.428 8 N -0.319 5.319 9 C -0.052 4.052 10 C 0.043 3.957 11 H 0.096 0.904 12 C -0.172 4.172 13 C -0.179 4.179 14 C -0.163 4.163 15 C 0.054 3.946 16 H 0.117 0.883 17 C -0.026 4.026 18 N -0.305 5.305 19 C -0.486 4.486 20 H 0.075 0.925 21 C -0.220 4.220 22 N -0.542 5.542 23 Si 0.885 3.115 24 H -0.220 1.220 25 H -0.212 1.212 26 H -0.221 1.221 27 H 0.121 0.879 28 H 0.115 0.885 29 H 0.129 0.871 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.107 0.893 41 H 0.052 0.948 42 H 0.063 0.937 43 H 0.082 0.918 44 H 0.099 0.901 45 H 0.081 0.919 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.207 -7.621 -9.706 13.394 hybrid contribution -1.100 -0.431 -1.100 1.615 sum -6.307 -8.052 -10.806 14.879 Atomic orbital electron populations 1.23938 0.95902 1.02059 1.01721 1.22516 0.95597 0.96593 0.98813 1.19864 0.95750 0.95762 0.94548 1.22754 0.99103 0.97804 1.03063 1.22229 0.99850 1.03527 0.95708 1.20126 0.79992 0.81402 0.87035 1.90663 1.67212 1.38124 1.46807 1.48075 1.43154 1.19349 1.21355 1.23021 1.01922 0.88932 0.91289 1.21240 0.89713 0.93893 0.90882 0.90403 1.22481 0.97679 0.98724 0.98309 1.22522 0.97496 1.00491 0.97352 1.21962 0.96955 1.00739 0.96681 1.21075 0.95027 0.85764 0.92725 0.88259 1.22249 0.94006 1.00238 0.86062 1.44439 1.42383 1.23889 1.19766 1.19839 1.21024 1.13405 0.94302 0.92491 1.25722 1.04855 0.98575 0.92848 1.70803 1.05780 1.43223 1.34427 0.83676 0.76126 0.75884 0.75834 1.22028 1.21203 1.22082 0.87883 0.88476 0.87124 0.89133 0.91473 0.91194 0.92012 0.91330 0.90125 0.88374 0.91537 0.92287 0.92927 0.89299 0.94796 0.93652 0.91798 0.90071 0.91920 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.23 13.71 29.01 0.40 -1.83 16 2 C -0.12 -1.49 7.95 -36.03 -0.29 -1.78 16 3 C -0.06 -0.73 0.72 -156.81 -0.11 -0.85 16 4 C -0.17 -2.02 5.02 37.16 0.19 -1.83 16 5 C -0.16 -1.69 8.07 37.16 0.30 -1.39 16 6 C 0.53 8.96 4.38 -10.98 -0.05 8.92 16 7 O -0.55 -11.21 15.43 5.55 0.09 -11.13 16 8 N -0.59 -10.20 1.65 -172.52 -0.28 -10.48 16 9 C 0.07 1.14 3.80 -3.49 -0.01 1.12 16 10 C 0.15 2.81 3.57 -66.85 -0.24 2.58 16 11 H 0.08 1.45 8.01 -51.93 -0.42 1.03 16 12 C -0.13 -2.32 5.16 -25.66 -0.13 -2.45 16 13 C -0.14 -2.58 4.02 -25.84 -0.10 -2.68 16 14 C -0.12 -2.61 5.40 -26.53 -0.14 -2.75 16 15 C 0.16 3.59 2.52 -67.09 -0.17 3.42 16 16 H 0.10 2.52 6.31 -51.93 -0.33 2.19 16 17 C 0.10 1.94 5.85 -3.74 -0.02 1.92 16 18 N -0.58 -13.33 2.38 -155.70 -0.37 -13.70 16 19 C -0.36 -9.32 9.54 -15.06 -0.14 -9.46 16 20 H 0.06 1.50 8.00 -52.48 -0.42 1.08 16 21 C -0.02 -0.43 4.58 -17.43 -0.08 -0.51 16 22 N -0.90 -25.82 12.42 55.49 0.69 -25.13 16 23 Si 1.06 24.29 30.02 -169.99 -5.10 19.19 16 24 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 27 H 0.10 1.07 5.68 -52.49 -0.30 0.77 16 28 H 0.10 0.94 8.06 -52.49 -0.42 0.52 16 29 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.09 1.08 2.48 -51.93 -0.13 0.95 16 31 H 0.07 0.64 7.07 -51.93 -0.37 0.27 16 32 H 0.07 0.92 6.22 -51.93 -0.32 0.60 16 33 H 0.06 0.66 8.06 -51.93 -0.42 0.24 16 34 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 35 H 0.08 0.89 4.61 -51.93 -0.24 0.65 16 36 H 0.10 1.25 2.55 -51.93 -0.13 1.12 16 37 H 0.07 1.06 8.08 -51.93 -0.42 0.64 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.05 0.75 5.55 -51.93 -0.29 0.47 16 40 H 0.09 1.58 1.43 -52.45 -0.08 1.51 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 1.48 6.35 -51.93 -0.33 1.15 16 44 H 0.08 1.64 6.99 -51.93 -0.36 1.27 16 45 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 46 H 0.27 7.81 5.58 -40.82 -0.23 7.58 16 LS Contribution 317.24 15.07 4.78 4.78 Total: -1.00 -29.92 317.24 -7.34 -37.26 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -6.53 Total: 6.81 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -0.61 Total: -7.59 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 0.03 Total: -49.32 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 24.29 SS G_CDS: -5.10 Total: 19.19 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.92 -7.34 -37.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039826790.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.338 kcal (2) G-P(sol) polarization free energy of solvation -29.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds