Wall clock time and date at job start Tue Mar 31 2020 06:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47314 * 2 1 4 4 C 1.50701 * 115.54635 * 295.34464 * 3 2 1 5 5 O 1.21283 * 120.00186 * 113.53369 * 4 3 2 6 6 N 1.34779 * 120.00138 * 293.52590 * 4 3 2 7 7 C 1.46946 * 120.44468 * 173.09356 * 6 4 3 8 8 C 1.53599 * 108.52015 * 125.76246 * 7 6 4 9 9 H 1.09002 * 110.59786 * 172.18217 * 8 7 6 10 10 C 1.53364 * 109.19962 * 294.10779 * 8 7 6 11 11 C 1.54670 * 108.58708 * 60.06723 * 10 8 7 12 12 C 1.53009 * 109.72338 * 60.84531 * 11 10 8 13 13 C 1.53369 * 109.24998 * 299.33107 * 12 11 10 14 14 H 1.09001 * 111.08790 * 177.84453 * 13 12 11 15 15 C 1.46947 * 120.44223 * 353.12090 * 6 4 3 16 16 N 1.47569 * 107.76576 * 51.16559 * 8 7 6 17 17 C 1.36941 * 121.61014 * 120.44504 * 16 8 7 18 18 H 1.07991 * 120.00312 * 336.74667 * 17 16 8 19 19 C 1.38814 * 119.99715 * 156.74022 * 17 16 8 20 20 N 1.31618 * 120.00240 * 327.45174 * 19 17 16 21 21 Si 1.86794 * 119.99780 * 147.45339 * 19 17 16 22 22 H 1.48494 * 109.47401 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47308 * 119.99968 * 21 19 17 24 24 H 1.48504 * 109.47062 * 239.99692 * 21 19 17 25 25 C 1.52992 * 117.50423 * 81.01482 * 3 2 1 26 26 C 1.53002 * 117.50060 * 149.67905 * 3 2 1 27 27 H 1.09007 * 109.46709 * 305.49223 * 1 2 3 28 28 H 1.08999 * 109.47162 * 65.48690 * 1 2 3 29 29 H 1.08997 * 109.47136 * 185.49035 * 1 2 3 30 30 H 1.09000 * 109.47205 * 239.99295 * 2 1 3 31 31 H 1.09001 * 109.46914 * 119.99892 * 2 1 3 32 32 H 1.09006 * 109.63029 * 6.05858 * 7 6 4 33 33 H 1.08994 * 109.79027 * 245.57001 * 7 6 4 34 34 H 1.09009 * 109.50034 * 180.52283 * 10 8 7 35 35 H 1.08999 * 109.50675 * 300.63635 * 10 8 7 36 36 H 1.09000 * 109.51466 * 300.72941 * 11 10 8 37 37 H 1.09004 * 109.33425 * 180.85360 * 11 10 8 38 38 H 1.09008 * 109.50660 * 179.40262 * 12 11 10 39 39 H 1.09001 * 109.54513 * 59.29437 * 12 11 10 40 40 H 1.08996 * 109.62210 * 353.93257 * 15 6 4 41 41 H 1.09003 * 109.62389 * 114.30660 * 15 6 4 42 42 H 0.97002 * 119.99992 * 354.19710 * 20 19 17 43 43 H 1.08996 * 117.50642 * 215.00331 * 25 3 2 44 44 H 1.09006 * 117.49649 * 0.02732 * 25 3 2 45 45 H 1.08995 * 117.49787 * 359.97376 * 26 3 2 46 46 H 1.08998 * 117.49824 * 144.97053 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.7080 2.2492 -1.2288 5 8 0.9530 3.1949 -1.1477 6 7 2.2501 1.9199 -2.4180 7 6 1.8194 2.6009 -3.6468 8 6 3.0608 3.1696 -4.3502 9 1 2.7988 3.5617 -5.3330 10 6 3.6757 4.2700 -3.4767 11 6 4.0752 3.6534 -2.1156 12 6 5.1119 2.5494 -2.3333 13 6 4.5047 1.4526 -3.2167 14 1 5.2320 0.6672 -3.4226 15 6 3.2794 0.8746 -2.5032 16 7 4.0481 2.0797 -4.4722 17 6 4.5138 1.6662 -5.6918 18 1 3.9278 1.8424 -6.5816 19 6 5.7391 1.0205 -5.7843 20 7 6.7115 1.3320 -4.9538 21 14 6.0079 -0.2905 -7.0874 22 1 4.7683 -0.4537 -7.8886 23 1 7.1234 0.1185 -7.9784 24 1 6.3457 -1.5791 -6.4310 25 6 2.0758 2.1793 1.3404 26 6 3.3801 1.7180 0.6851 27 1 -0.3633 0.5967 0.8368 28 1 -0.3633 0.4264 -0.9350 29 1 -0.3633 -1.0229 0.0983 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.1369 3.4129 -3.3955 33 1 1.3180 1.8918 -4.3054 34 1 4.5521 4.6836 -3.9758 35 1 2.9417 5.0595 -3.3156 36 1 3.1929 3.2322 -1.6338 37 1 4.5002 4.4293 -1.4788 38 1 5.3988 2.1246 -1.3712 39 1 5.9914 2.9666 -2.8237 40 1 3.5570 0.5517 -1.4998 41 1 2.8932 0.0257 -3.0673 42 1 6.6017 2.0693 -4.3331 43 1 1.8591 3.2474 1.3335 44 1 1.7363 1.6361 2.2224 45 1 3.8980 0.8718 1.1363 46 1 4.0216 2.4825 0.2469 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039899325.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:01 Heat of formation + Delta-G solvation = 32.646516 kcal Electronic energy + Delta-G solvation = -26423.177374 eV Core-core repulsion = 23121.844256 eV Total energy + Delta-G solvation = -3301.333118 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.06029 -38.43333 -36.66124 -34.11721 -32.91969 -32.09780 -31.85987 -30.23167 -27.03628 -25.88600 -24.50984 -23.63870 -22.48008 -22.16881 -21.41610 -21.03486 -18.93773 -18.52728 -16.94780 -16.29751 -15.83184 -15.25720 -14.65692 -14.48428 -14.45558 -14.05226 -13.71286 -13.65489 -13.17487 -13.03732 -12.87306 -12.54615 -12.47092 -12.21571 -12.06695 -11.65310 -11.57592 -11.47844 -11.24938 -11.01766 -10.75551 -10.61573 -10.38600 -10.32143 -10.27012 -10.17805 -10.02519 -9.90988 -9.65136 -9.44545 -9.18041 -8.43902 -7.95838 -6.85635 -6.16530 -3.21075 2.82558 3.28411 3.49702 3.49933 3.65231 3.74657 4.52446 4.53955 4.69442 4.80341 4.91614 5.02025 5.26880 5.29029 5.41328 5.48626 5.57872 5.61159 5.63440 5.66445 5.70951 5.75368 5.79875 5.84211 5.89442 5.97406 6.00999 6.09748 6.12814 6.17199 6.19881 6.26077 6.27987 6.37575 6.44424 6.53337 6.68255 6.81075 6.86318 6.95784 7.09028 7.17819 7.82545 7.92590 8.48961 8.50598 9.02480 9.76957 10.25194 11.13397 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.021084 B = 0.005958 C = 0.005666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.703206 B = 4698.051554 C = 4940.220999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 C -0.154 4.154 4 C 0.553 3.447 5 O -0.552 6.552 6 N -0.585 5.585 7 C 0.101 3.899 8 C 0.154 3.846 9 H 0.077 0.923 10 C -0.123 4.123 11 C -0.140 4.140 12 C -0.125 4.125 13 C 0.158 3.842 14 H 0.105 0.895 15 C 0.093 3.907 16 N -0.585 5.585 17 C -0.351 4.351 18 H 0.060 0.940 19 C -0.020 4.020 20 N -0.908 5.908 21 Si 1.058 2.942 22 H -0.292 1.292 23 H -0.296 1.296 24 H -0.290 1.290 25 C -0.146 4.146 26 C -0.165 4.165 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.045 0.955 36 H 0.087 0.913 37 H 0.032 0.968 38 H 0.045 0.955 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.273 0.727 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.103 0.897 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.715 -1.890 10.490 13.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 C -0.157 4.157 4 C 0.342 3.658 5 O -0.431 6.431 6 N -0.317 5.317 7 C -0.023 4.023 8 C 0.046 3.954 9 H 0.095 0.905 10 C -0.163 4.163 11 C -0.178 4.178 12 C -0.164 4.164 13 C 0.051 3.949 14 H 0.122 0.878 15 C -0.031 4.031 16 N -0.307 5.307 17 C -0.479 4.479 18 H 0.078 0.922 19 C -0.223 4.223 20 N -0.548 5.548 21 Si 0.888 3.112 22 H -0.218 1.218 23 H -0.223 1.223 24 H -0.217 1.217 25 C -0.184 4.184 26 C -0.202 4.202 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.028 -2.538 9.858 12.370 hybrid contribution -0.900 1.208 0.406 1.560 sum -7.928 -1.330 10.264 13.037 Atomic orbital electron populations 1.21704 0.95181 1.01323 1.02323 1.21093 0.96335 0.91699 1.02851 1.21456 1.03656 0.97409 0.93197 1.19215 0.79554 0.83491 0.83536 1.90655 1.37827 1.29182 1.85464 1.48055 1.39066 1.38139 1.06456 1.22202 0.98072 0.96973 0.85014 1.21198 0.89198 0.88603 0.96388 0.90489 1.22220 1.00011 0.97535 0.96498 1.22422 1.00620 0.97510 0.97229 1.22013 0.98547 0.97296 0.98524 1.21119 0.93271 0.95012 0.85532 0.87777 1.22458 0.89883 0.89783 1.00951 1.44505 1.48585 1.35515 1.02104 1.19946 1.02983 1.39372 0.85620 0.92242 1.25658 0.90464 1.03154 1.03018 1.70747 1.30179 1.29905 1.23962 0.83657 0.74958 0.76973 0.75606 1.21850 1.22293 1.21683 1.22972 1.00241 1.01139 0.93999 1.23266 0.90238 1.04021 1.02692 0.92462 0.92805 0.92570 0.90776 0.91037 0.90041 0.91859 0.92490 0.93643 0.89522 0.94898 0.93590 0.91825 0.90309 0.91820 0.91521 0.88147 0.88216 0.87868 0.87841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.70 37.16 0.36 -1.31 16 2 C -0.08 -0.94 5.48 -26.73 -0.15 -1.09 16 3 C -0.15 -2.08 0.75 -155.66 -0.12 -2.19 16 4 C 0.55 9.43 3.85 -10.98 -0.04 9.39 16 5 O -0.55 -11.00 16.05 5.55 0.09 -10.91 16 6 N -0.59 -10.28 1.65 -172.53 -0.28 -10.56 16 7 C 0.10 1.88 5.91 -3.49 -0.02 1.86 16 8 C 0.15 3.15 3.58 -66.85 -0.24 2.91 16 9 H 0.08 1.58 8.01 -51.93 -0.42 1.17 16 10 C -0.12 -2.43 5.72 -25.66 -0.15 -2.57 16 11 C -0.14 -2.63 4.73 -25.85 -0.12 -2.75 16 12 C -0.12 -2.45 5.29 -26.54 -0.14 -2.59 16 13 C 0.16 3.34 2.50 -67.09 -0.17 3.17 16 14 H 0.10 2.51 6.08 -51.93 -0.32 2.19 16 15 C 0.09 1.64 4.71 -3.74 -0.02 1.63 16 16 N -0.59 -13.56 2.42 -155.70 -0.38 -13.94 16 17 C -0.35 -9.22 9.56 -15.06 -0.14 -9.36 16 18 H 0.06 1.60 8.01 -52.49 -0.42 1.18 16 19 C -0.02 -0.54 4.61 -17.43 -0.08 -0.62 16 20 N -0.91 -25.57 12.28 55.49 0.68 -24.89 16 21 Si 1.06 24.22 30.02 -169.99 -5.10 19.11 16 22 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.30 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 25 C -0.15 -1.75 9.78 -26.70 -0.26 -2.01 16 26 C -0.17 -2.00 8.82 -26.69 -0.24 -2.24 16 27 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 28 H 0.05 0.71 7.87 -51.93 -0.41 0.30 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.89 6.54 -51.93 -0.34 0.55 16 31 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 32 H 0.08 1.50 6.98 -51.93 -0.36 1.14 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 35 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.09 1.59 1.93 -52.45 -0.10 1.49 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.80 7.29 -51.92 -0.38 0.42 16 39 H 0.06 1.42 6.50 -51.93 -0.34 1.08 16 40 H 0.08 1.20 4.86 -51.93 -0.25 0.95 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.27 7.68 5.60 -40.82 -0.23 7.45 16 43 H 0.10 1.33 8.01 -51.93 -0.42 0.91 16 44 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.10 1.42 5.77 -51.93 -0.30 1.12 16 LS Contribution 333.55 15.07 5.03 5.03 Total: -1.00 -29.31 333.55 -8.79 -38.09 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -7.30 Total: 5.86 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -1.52 Total: -7.79 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: 0.02 Total: -49.39 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 14 Polarization: 24.22 SS G_CDS: -5.10 Total: 19.11 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.31 -8.79 -38.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039899325.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.741 kcal (2) G-P(sol) polarization free energy of solvation -29.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds