Wall clock time and date at job start Tue Mar 31 2020 08:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32995 * 120.00588 * 2 1 4 4 C 1.50699 * 119.99465 * 359.97438 * 3 2 1 5 5 C 1.47094 * 120.00512 * 180.02562 * 3 2 1 6 6 O 1.21620 * 119.99902 * 254.43935 * 5 3 2 7 7 N 1.34773 * 120.00398 * 74.43669 * 5 3 2 8 8 C 1.48158 * 127.02327 * 4.49770 * 7 5 3 9 9 C 1.55044 * 103.31089 * 140.98491 * 8 7 5 10 10 C 1.54173 * 102.72129 * 37.01818 * 9 8 7 11 11 C 1.47616 * 127.02658 * 184.50336 * 7 5 3 12 12 C 1.52495 * 110.02233 * 219.30073 * 10 9 8 13 13 C 1.53129 * 109.59159 * 298.37572 * 12 10 9 14 14 C 1.53194 * 109.28977 * 299.50816 * 13 12 10 15 15 N 1.46925 * 108.88543 * 55.07457 * 14 13 12 16 16 C 1.36941 * 120.68157 * 125.94981 * 15 14 13 17 17 H 1.08005 * 119.99418 * 322.10929 * 16 15 14 18 18 C 1.38813 * 120.00026 * 142.11063 * 16 15 14 19 19 N 1.31619 * 120.00092 * 354.97913 * 18 16 15 20 20 Si 1.86794 * 119.99754 * 174.98138 * 18 16 15 21 21 H 1.48499 * 109.47506 * 89.99831 * 20 18 16 22 22 H 1.48499 * 109.47228 * 209.99825 * 20 18 16 23 23 H 1.48509 * 109.47378 * 329.99903 * 20 18 16 24 24 C 1.47033 * 118.63953 * 305.96722 * 15 14 13 25 25 H 1.09005 * 109.46916 * 59.99956 * 1 2 3 26 26 H 1.08993 * 109.47610 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47249 * 300.00445 * 1 2 3 28 28 H 1.08010 * 119.99951 * 179.97438 * 2 1 3 29 29 H 1.09005 * 109.47633 * 266.80606 * 4 3 2 30 30 H 1.09001 * 109.47483 * 26.80604 * 4 3 2 31 31 H 1.09003 * 109.46947 * 146.80881 * 4 3 2 32 32 H 1.09000 * 110.65302 * 259.44507 * 8 7 5 33 33 H 1.09001 * 110.64553 * 22.37168 * 8 7 5 34 34 H 1.08989 * 110.76220 * 278.70642 * 9 8 7 35 35 H 1.09000 * 110.75848 * 155.32384 * 9 8 7 36 36 H 1.09001 * 109.97297 * 85.95655 * 11 7 5 37 37 H 1.09005 * 109.96723 * 324.69382 * 11 7 5 38 38 H 1.08998 * 109.45254 * 178.34014 * 12 10 9 39 39 H 1.09003 * 109.44320 * 58.40223 * 12 10 9 40 40 H 1.08998 * 109.50347 * 59.44829 * 13 12 10 41 41 H 1.08997 * 109.50167 * 179.56343 * 13 12 10 42 42 H 1.08996 * 109.56559 * 174.89402 * 14 13 12 43 43 H 1.08996 * 109.56418 * 295.25413 * 14 13 12 44 44 H 0.96998 * 119.99528 * 180.02562 * 19 18 16 45 45 H 1.08997 * 109.58335 * 172.58975 * 24 15 14 46 46 H 1.09004 * 109.58032 * 292.99381 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4186 2.4568 -0.0006 5 6 3.6430 1.1517 -0.0006 6 8 4.2515 1.4340 1.0139 7 7 4.3165 0.8388 -1.1252 8 6 3.7409 0.5630 -2.4623 9 6 4.7439 1.2424 -3.4298 10 6 6.1028 0.9766 -2.7518 11 6 5.7784 0.7007 -1.2766 12 6 6.9985 2.2043 -2.8784 13 6 7.2626 2.4968 -4.3582 14 6 7.9675 1.2943 -4.9937 15 7 7.1574 0.0907 -4.7614 16 6 6.7713 -0.7043 -5.8073 17 1 6.4895 -0.2579 -6.7496 18 6 6.7420 -2.0839 -5.6565 19 7 7.1787 -2.6337 -4.5432 20 14 6.0829 -3.1602 -7.0337 21 1 7.1939 -3.5325 -7.9460 22 1 5.4828 -4.3900 -6.4568 23 1 5.0478 -2.4137 -7.7932 24 6 6.7694 -0.2423 -3.3828 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 2.0470 -0.9354 0.0004 29 1 1.2868 2.7999 -1.0268 30 1 0.4423 2.3130 0.4625 31 1 1.9815 3.2016 0.5621 32 1 3.6952 -0.5103 -2.6472 33 1 2.7511 1.0102 -2.5543 34 1 4.5494 2.3126 -3.4991 35 1 4.7060 0.7772 -4.4148 36 1 6.0864 -0.3104 -1.0104 37 1 6.2884 1.4250 -0.6414 38 1 7.9448 2.0172 -2.3709 39 1 6.5051 3.0621 -2.4214 40 1 6.3161 2.6751 -4.8685 41 1 7.8965 3.3790 -4.4472 42 1 8.0765 1.4596 -6.0655 43 1 8.9504 1.1659 -4.5404 44 1 7.1585 -3.5978 -4.4381 45 1 6.0696 -1.0778 -3.3920 46 1 7.6560 -0.5122 -2.8089 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040144403.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:37 Heat of formation + Delta-G solvation = -7.794510 kcal Electronic energy + Delta-G solvation = -24817.173662 eV Core-core repulsion = 21514.086890 eV Total energy + Delta-G solvation = -3303.086772 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.14387 -38.47048 -35.71200 -35.59958 -33.07940 -31.19780 -30.02249 -29.44988 -29.10283 -26.77618 -25.34933 -24.98788 -22.95190 -22.17942 -21.10731 -20.14049 -18.47306 -17.67997 -16.74630 -16.45457 -15.91212 -15.47238 -14.83511 -14.42272 -14.04341 -13.86242 -13.82965 -13.57179 -13.11282 -13.02992 -12.86642 -12.75984 -12.47865 -12.29244 -12.18302 -12.00501 -11.88069 -11.60117 -11.39682 -11.10232 -10.97540 -10.89861 -10.72905 -10.43738 -10.15329 -10.08936 -9.83247 -9.77558 -9.48792 -9.36829 -9.02445 -8.52461 -8.40146 -6.53395 -5.84051 -3.38081 1.70934 2.80197 3.27717 3.32818 3.40330 3.40584 4.43555 4.54576 4.85707 5.02869 5.08188 5.13969 5.19306 5.27300 5.37865 5.39773 5.51806 5.55317 5.61324 5.66314 5.67896 5.73479 5.75240 5.80327 5.89944 6.05703 6.08442 6.18749 6.26659 6.29291 6.34276 6.43475 6.47574 6.52529 6.54813 6.66317 6.80023 6.86981 6.97237 7.03149 7.30893 7.59448 7.76462 7.78884 8.32582 8.47924 9.19721 9.78492 10.42274 11.24120 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.016079 B = 0.004988 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.968021 B = 5612.642583 C = 6638.360255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C -0.159 4.159 4 C -0.106 4.106 5 C 0.570 3.430 6 O -0.550 6.550 7 N -0.609 5.609 8 C 0.101 3.899 9 C -0.112 4.112 10 C -0.094 4.094 11 C 0.115 3.885 12 C -0.093 4.093 13 C -0.134 4.134 14 C 0.144 3.856 15 N -0.588 5.588 16 C -0.258 4.258 17 H 0.061 0.939 18 C 0.014 3.986 19 N -0.901 5.901 20 Si 0.900 3.100 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.278 1.278 24 C 0.192 3.808 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.114 0.886 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.045 0.955 40 H 0.058 0.942 41 H 0.048 0.952 42 H 0.052 0.948 43 H 0.016 0.984 44 H 0.255 0.745 45 H 0.082 0.918 46 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.711 7.813 5.239 14.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.140 4.140 3 C -0.162 4.162 4 C -0.163 4.163 5 C 0.358 3.642 6 O -0.428 6.428 7 N -0.342 5.342 8 C -0.022 4.022 9 C -0.150 4.150 10 C -0.097 4.097 11 C -0.007 4.007 12 C -0.131 4.131 13 C -0.173 4.173 14 C 0.018 3.982 15 N -0.310 5.310 16 C -0.387 4.387 17 H 0.078 0.922 18 C -0.186 4.186 19 N -0.544 5.544 20 Si 0.729 3.271 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.204 1.204 24 C 0.066 3.934 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.132 0.868 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.034 0.966 44 H 0.065 0.935 45 H 0.101 0.899 46 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -10.413 7.786 5.887 14.273 hybrid contribution -0.169 -0.776 -0.656 1.030 sum -10.582 7.010 5.231 13.729 Atomic orbital electron populations 1.20870 0.92159 1.02693 1.02212 1.23251 0.96453 0.96899 0.97391 1.21367 0.92621 0.97053 1.05181 1.20705 0.99483 0.93720 1.02361 1.18125 0.87387 0.76553 0.82093 1.90787 1.70014 1.49660 1.32386 1.48953 1.08414 1.67524 1.09308 1.22661 0.97364 1.00898 0.81230 1.22661 0.93153 0.99565 0.99596 1.21861 0.95914 0.99504 0.92385 1.22149 0.79624 1.01622 0.97329 1.21370 0.98792 0.96052 0.96912 1.22037 1.00767 0.98660 0.95821 1.20938 0.92623 0.86883 0.97758 1.43898 1.58296 1.25868 1.02960 1.19071 1.39482 0.87064 0.93128 0.92151 1.25342 0.99002 0.97307 0.96955 1.69942 1.48747 1.10187 1.25489 0.86351 0.78661 0.80160 0.81886 1.21263 1.21634 1.20358 1.20674 0.96725 0.91676 0.84300 0.91059 0.91683 0.91164 0.86780 0.90998 0.90945 0.91449 0.90639 0.90950 0.92273 0.88279 0.91266 0.91175 0.92611 0.93620 0.92303 0.93313 0.92953 0.96590 0.93511 0.89934 0.96178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 8.87 36.00 0.32 -0.67 16 2 C -0.12 -1.36 9.96 -36.13 -0.36 -1.72 16 3 C -0.16 -2.06 4.62 -102.85 -0.47 -2.54 16 4 C -0.11 -1.08 9.61 36.01 0.35 -0.74 16 5 C 0.57 9.57 7.27 -12.67 -0.09 9.48 16 6 O -0.55 -11.20 17.43 5.26 0.09 -11.11 16 7 N -0.61 -9.98 3.30 -171.23 -0.56 -10.55 16 8 C 0.10 1.50 6.90 -2.05 -0.01 1.49 16 9 C -0.11 -1.83 5.00 -25.04 -0.13 -1.96 16 10 C -0.09 -1.68 0.63 -154.08 -0.10 -1.77 16 11 C 0.12 2.02 6.30 -3.15 -0.02 2.00 16 12 C -0.09 -1.56 4.34 -26.92 -0.12 -1.68 16 13 C -0.13 -2.25 5.89 -26.56 -0.16 -2.40 16 14 C 0.14 2.93 6.50 -3.71 -0.02 2.90 16 15 N -0.59 -13.82 2.47 -172.60 -0.43 -14.25 16 16 C -0.26 -6.65 9.51 -15.06 -0.14 -6.80 16 17 H 0.06 1.55 7.83 -52.48 -0.41 1.14 16 18 C 0.01 0.36 5.14 -17.43 -0.09 0.27 16 19 N -0.90 -25.07 11.27 55.49 0.63 -24.44 16 20 Si 0.90 20.76 29.56 -169.99 -5.02 15.74 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 C 0.19 4.27 3.54 -3.96 -0.01 4.26 16 25 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.51 7.41 -51.93 -0.38 0.13 16 28 H 0.11 1.35 8.05 -52.48 -0.42 0.93 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.59 6.38 -51.93 -0.33 0.26 16 31 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.07 0.92 7.47 -51.93 -0.39 0.53 16 34 H 0.06 0.91 7.63 -51.94 -0.40 0.51 16 35 H 0.10 1.85 7.48 -51.93 -0.39 1.46 16 36 H 0.07 1.28 7.67 -51.93 -0.40 0.88 16 37 H 0.07 1.25 7.56 -51.93 -0.39 0.85 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.99 7.13 -51.93 -0.37 0.62 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.05 1.05 7.93 -51.93 -0.41 0.63 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 45 H 0.08 2.05 6.50 -51.93 -0.34 1.71 16 46 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 358.10 15.07 5.40 5.40 Total: -1.00 -29.85 358.10 -8.95 -38.80 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -7.99 Total: 0.28 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -1.06 Total: 0.13 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: -0.36 Total: -49.24 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.85 -8.95 -38.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040144403.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.010 kcal (2) G-P(sol) polarization free energy of solvation -29.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds