Wall clock time and date at job start Tue Mar 31 2020 08:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.32990 * 120.00106 * 2 1 4 4 C 1.50702 * 119.99820 * 179.97438 * 3 2 1 5 5 C 1.47095 * 120.00007 * 0.02562 * 3 2 1 6 6 O 1.21618 * 119.99821 * 256.71016 * 5 3 2 7 7 N 1.34778 * 120.00612 * 76.71059 * 5 3 2 8 8 C 1.47085 * 125.62448 * 5.89232 * 7 5 3 9 9 C 1.54448 * 107.29846 * 179.03526 * 8 7 5 10 10 C 1.54402 * 102.86834 * 338.49388 * 9 8 7 11 11 C 1.47567 * 125.63245 * 185.91458 * 7 5 3 12 12 C 1.52116 * 110.50018 * 152.63566 * 10 9 8 13 13 C 1.53343 * 109.44430 * 64.08849 * 12 10 9 14 14 N 1.46925 * 108.68816 * 53.29498 * 13 12 10 15 15 C 1.36939 * 120.54966 * 125.63280 * 14 13 12 16 16 H 1.07997 * 120.00118 * 324.13308 * 15 14 13 17 17 C 1.38816 * 119.99946 * 144.13055 * 15 14 13 18 18 N 1.31618 * 119.99779 * 3.50786 * 17 15 14 19 19 Si 1.86797 * 120.00172 * 183.51152 * 17 15 14 20 20 H 1.48507 * 109.47057 * 59.99610 * 19 17 15 21 21 H 1.48493 * 109.47336 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47009 * 300.00186 * 19 17 15 23 23 C 1.46938 * 118.89969 * 305.65776 * 14 13 12 24 24 C 1.52107 * 110.51282 * 276.65189 * 10 9 8 25 25 H 1.08994 * 109.46593 * 299.99849 * 1 2 3 26 26 H 1.08994 * 109.46867 * 59.99699 * 1 2 3 27 27 H 1.09000 * 109.47085 * 179.97438 * 1 2 3 28 28 H 1.08003 * 119.99344 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47432 * 275.01485 * 4 3 2 30 30 H 1.08997 * 109.46883 * 35.01608 * 4 3 2 31 31 H 1.09002 * 109.46807 * 155.01646 * 4 3 2 32 32 H 1.08998 * 109.88376 * 59.60389 * 8 7 5 33 33 H 1.09004 * 109.87602 * 298.45521 * 8 7 5 34 34 H 1.09003 * 110.73344 * 220.15250 * 9 8 7 35 35 H 1.08996 * 110.73788 * 96.84005 * 9 8 7 36 36 H 1.09001 * 110.37523 * 84.47064 * 11 7 5 37 37 H 1.09000 * 110.37627 * 322.12735 * 11 7 5 38 38 H 1.09004 * 109.47130 * 184.08081 * 12 10 9 39 39 H 1.09003 * 109.47586 * 304.09796 * 12 10 9 40 40 H 1.09001 * 109.59898 * 173.05504 * 13 12 10 41 41 H 1.08999 * 109.60102 * 293.53768 * 13 12 10 42 42 H 0.97004 * 119.99481 * 179.97438 * 18 17 15 43 43 H 1.08999 * 109.60230 * 294.58584 * 23 14 13 44 44 H 1.08999 * 109.73146 * 174.18609 * 23 14 13 45 45 H 1.08999 * 109.47073 * 55.91935 * 24 10 9 46 46 H 1.09001 * 109.47466 * 175.91879 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1721 1.1517 0.0000 4 6 3.6791 1.1516 0.0006 5 6 1.4366 2.4256 0.0006 6 8 1.3419 3.0735 -1.0243 7 7 0.8677 2.8749 1.1368 8 6 1.0063 2.2599 2.4657 9 6 0.2043 3.1284 3.4596 10 6 0.1103 4.4866 2.7312 11 6 0.0027 4.0648 1.2529 12 6 -1.1370 5.2400 3.1678 13 6 -1.0333 5.5778 4.6599 14 7 0.2373 6.2764 4.8973 15 6 0.2551 7.4970 5.5177 16 1 -0.5386 8.2066 5.3364 17 6 1.2934 7.8223 6.3798 18 7 2.2958 6.9860 6.5477 19 14 1.2678 9.4468 7.3016 20 1 0.0566 9.5107 8.1585 21 1 2.4815 9.5534 8.1505 22 1 1.2452 10.5680 6.3281 23 6 1.4884 5.6439 4.4573 24 6 1.3702 5.3058 2.9663 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 2.0470 -0.9354 -0.0004 29 1 4.0420 1.0620 1.0244 30 1 4.0425 0.3099 -0.5888 31 1 4.0426 2.0831 -0.4335 32 1 2.0566 2.2379 2.7563 33 1 0.6030 1.2473 2.4492 34 1 0.7419 3.2324 4.4021 35 1 -0.7883 2.7095 3.6245 36 1 -1.0278 3.8105 1.0048 37 1 0.3645 4.8619 0.6035 38 1 -1.2253 6.1612 2.5918 39 1 -2.0158 4.6183 2.9962 40 1 -1.8641 6.2220 4.9476 41 1 -1.0602 4.6589 5.2456 42 1 3.0214 7.2135 7.1499 43 1 1.6563 4.7300 5.0272 44 1 2.3216 6.3294 4.6119 45 1 2.2414 4.7302 2.6539 46 1 1.3173 6.2279 2.3875 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040660404.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:56 Heat of formation + Delta-G solvation = -5.109726 kcal Electronic energy + Delta-G solvation = -24763.893276 eV Core-core repulsion = 21460.922925 eV Total energy + Delta-G solvation = -3302.970351 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -40.46653 -38.62669 -35.79334 -35.39011 -32.99520 -30.82854 -30.38972 -29.93314 -29.46615 -27.18676 -25.07795 -24.09639 -23.18585 -22.18183 -21.66878 -20.54411 -18.69407 -17.68667 -16.62756 -16.31210 -15.97065 -15.31084 -14.89915 -14.87468 -14.07526 -13.85257 -13.73812 -13.55399 -13.26847 -13.17607 -13.09798 -12.85602 -12.69307 -12.33404 -12.30405 -12.06427 -11.92440 -11.68882 -11.52782 -11.24088 -10.94889 -10.78378 -10.68918 -10.49909 -10.19453 -10.10729 -9.87319 -9.82562 -9.48852 -9.43631 -9.09000 -8.51080 -8.43154 -6.52895 -5.78835 -3.32202 1.61367 2.66702 3.15684 3.37559 3.42764 3.43715 4.42884 4.47872 4.68613 4.79030 4.89473 5.04776 5.11785 5.27725 5.33947 5.37364 5.40837 5.44618 5.48139 5.51347 5.61485 5.70206 5.71738 5.82316 5.85111 5.95655 5.97824 6.10302 6.13622 6.20677 6.29348 6.32002 6.40385 6.44588 6.55850 6.66272 6.74259 6.78515 6.89743 6.99404 7.43960 7.60415 7.77861 7.81492 8.19522 8.53547 9.25183 9.84077 10.43714 11.26915 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.029338 B = 0.003806 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.151423 B = 7355.862340 C = 7652.577456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.121 4.121 3 C -0.160 4.160 4 C -0.105 4.105 5 C 0.571 3.429 6 O -0.544 6.544 7 N -0.607 5.607 8 C 0.103 3.897 9 C -0.124 4.124 10 C -0.055 4.055 11 C 0.112 3.888 12 C -0.118 4.118 13 C 0.148 3.852 14 N -0.593 5.593 15 C -0.255 4.255 16 H 0.062 0.938 17 C 0.010 3.990 18 N -0.905 5.905 19 Si 0.903 3.097 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.283 1.283 23 C 0.170 3.830 24 C -0.126 4.126 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.124 0.876 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.019 0.981 42 H 0.255 0.745 43 H 0.016 0.984 44 H 0.098 0.902 45 H 0.046 0.954 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.083 -14.380 -9.022 17.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.140 4.140 3 C -0.162 4.162 4 C -0.162 4.162 5 C 0.360 3.640 6 O -0.422 6.422 7 N -0.340 5.340 8 C -0.019 4.019 9 C -0.161 4.161 10 C -0.056 4.056 11 C -0.010 4.010 12 C -0.158 4.158 13 C 0.022 3.978 14 N -0.315 5.315 15 C -0.385 4.385 16 H 0.079 0.921 17 C -0.189 4.189 18 N -0.549 5.549 19 Si 0.732 3.268 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.210 1.210 23 C 0.044 3.956 24 C -0.165 4.165 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.142 0.858 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.037 0.963 42 H 0.065 0.935 43 H 0.034 0.966 44 H 0.116 0.884 45 H 0.065 0.935 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.944 -14.027 -9.508 17.057 hybrid contribution 0.069 0.725 0.490 0.877 sum -1.875 -13.302 -9.019 16.180 Atomic orbital electron populations 1.21006 0.92808 1.02705 1.02775 1.23256 0.96267 0.96715 0.97779 1.21487 0.97023 0.92868 1.04863 1.20663 0.89763 1.03219 1.02512 1.18127 0.78270 0.85278 0.82343 1.90800 1.61206 1.58122 1.32120 1.48553 1.49128 1.28630 1.07673 1.22129 1.00964 0.96697 0.82152 1.22721 1.00216 0.94482 0.98706 1.21003 0.98041 0.94781 0.91739 1.22393 0.93347 0.87260 0.98041 1.21858 0.94576 0.99146 1.00220 1.20919 0.90190 0.95364 0.91367 1.43967 1.00275 1.19358 1.67943 1.19113 1.08979 0.91653 1.18706 0.92055 1.25306 0.98120 0.98087 0.97342 1.69878 1.10248 1.36100 1.38682 0.86377 0.77025 0.83395 0.79988 1.20864 1.21598 1.20955 1.20981 0.91010 0.96757 0.86821 1.22047 0.94236 0.98006 1.02235 0.90923 0.91348 0.91499 0.85846 0.90814 0.91102 0.91376 0.91413 0.91786 0.88825 0.91068 0.91927 0.90617 0.92152 0.92998 0.92866 0.96325 0.93511 0.96572 0.88406 0.93532 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.16 36.01 0.33 -0.95 16 2 C -0.12 -1.17 9.94 -36.12 -0.36 -1.53 16 3 C -0.16 -1.90 4.93 -102.85 -0.51 -2.41 16 4 C -0.10 -1.04 10.02 36.01 0.36 -0.68 16 5 C 0.57 8.76 6.07 -12.67 -0.08 8.69 16 6 O -0.54 -10.45 17.35 5.26 0.09 -10.35 16 7 N -0.61 -8.69 3.07 -172.17 -0.53 -9.22 16 8 C 0.10 1.28 5.91 -2.96 -0.02 1.27 16 9 C -0.12 -1.72 4.92 -25.24 -0.12 -1.84 16 10 C -0.05 -0.87 0.55 -154.10 -0.08 -0.95 16 11 C 0.11 1.69 5.84 -2.88 -0.02 1.67 16 12 C -0.12 -1.95 4.84 -27.00 -0.13 -2.08 16 13 C 0.15 2.94 6.24 -3.63 -0.02 2.92 16 14 N -0.59 -14.32 2.98 -172.13 -0.51 -14.83 16 15 C -0.25 -6.85 9.54 -15.06 -0.14 -6.99 16 16 H 0.06 1.63 7.83 -52.49 -0.41 1.22 16 17 C 0.01 0.27 5.31 -17.43 -0.09 0.18 16 18 N -0.90 -25.52 10.66 55.49 0.59 -24.93 16 19 Si 0.90 21.38 29.55 -169.99 -5.02 16.35 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.17 3.90 4.96 -3.63 -0.02 3.88 16 24 C -0.13 -2.39 4.85 -27.01 -0.13 -2.52 16 25 H 0.07 0.72 6.12 -51.93 -0.32 0.40 16 26 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 31 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.67 6.62 -51.93 -0.34 0.33 16 34 H 0.09 1.46 6.17 -51.93 -0.32 1.14 16 35 H 0.07 0.89 7.98 -51.93 -0.41 0.48 16 36 H 0.06 0.88 7.99 -51.93 -0.41 0.47 16 37 H 0.08 1.27 7.89 -51.93 -0.41 0.86 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.05 0.73 8.09 -51.93 -0.42 0.30 16 40 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 41 H 0.02 0.37 7.62 -51.93 -0.40 -0.03 16 42 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.02 0.38 6.55 -51.93 -0.34 0.04 16 44 H 0.10 2.60 5.94 -51.93 -0.31 2.29 16 45 H 0.05 0.85 7.82 -51.93 -0.41 0.44 16 46 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 353.91 15.07 5.33 5.33 Total: -1.00 -30.54 353.91 -8.93 -39.47 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -7.85 Total: -0.47 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -1.03 Total: -1.34 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: -0.45 Total: -48.99 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.54 -8.93 -39.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040660404.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.358 kcal (2) G-P(sol) polarization free energy of solvation -30.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds