Wall clock time and date at job start Tue Mar 31 2020 08:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32995 * 119.99337 * 2 1 4 4 C 1.50703 * 120.00461 * 359.97438 * 3 2 1 5 5 C 1.47101 * 119.99672 * 179.97438 * 3 2 1 6 6 O 1.21612 * 120.00233 * 256.27389 * 5 3 2 7 7 N 1.34782 * 119.99901 * 76.27422 * 5 3 2 8 8 C 1.47089 * 125.62808 * 4.60885 * 7 5 3 9 9 C 1.54457 * 107.29392 * 179.03435 * 8 7 5 10 10 C 1.54385 * 102.87331 * 338.49834 * 9 8 7 11 11 C 1.47571 * 125.62925 * 184.63680 * 7 5 3 12 12 C 1.52114 * 110.50397 * 152.63296 * 10 9 8 13 13 C 1.53341 * 109.44073 * 64.08412 * 12 10 9 14 14 N 1.46934 * 108.68839 * 53.30325 * 13 12 10 15 15 C 1.36932 * 120.55085 * 125.62933 * 14 13 12 16 16 H 1.07992 * 120.00602 * 320.77201 * 15 14 13 17 17 C 1.38819 * 119.99729 * 140.77533 * 15 14 13 18 18 N 1.31613 * 119.99861 * 356.02702 * 17 15 14 19 19 Si 1.86794 * 120.00065 * 176.03209 * 17 15 14 20 20 H 1.48500 * 109.47473 * 59.99582 * 19 17 15 21 21 H 1.48497 * 109.47446 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47120 * 299.99703 * 19 17 15 23 23 C 1.46940 * 118.89430 * 305.65460 * 14 13 12 24 24 C 1.52110 * 110.51540 * 276.65357 * 10 9 8 25 25 H 1.09004 * 109.46768 * 60.00913 * 1 2 3 26 26 H 1.09003 * 109.46619 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47635 * 300.00358 * 1 2 3 28 28 H 1.07993 * 120.00154 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.46699 * 274.36700 * 4 3 2 30 30 H 1.08996 * 109.46488 * 34.36547 * 4 3 2 31 31 H 1.08996 * 109.46653 * 154.36260 * 4 3 2 32 32 H 1.09002 * 109.87174 * 59.60847 * 8 7 5 33 33 H 1.08997 * 110.00048 * 298.53295 * 8 7 5 34 34 H 1.09003 * 110.73078 * 220.15329 * 9 8 7 35 35 H 1.09002 * 110.72989 * 96.84831 * 9 8 7 36 36 H 1.08998 * 110.37685 * 84.46520 * 11 7 5 37 37 H 1.08999 * 110.37864 * 322.12285 * 11 7 5 38 38 H 1.08995 * 109.48002 * 184.08322 * 12 10 9 39 39 H 1.09002 * 109.47527 * 304.10057 * 12 10 9 40 40 H 1.08998 * 109.60235 * 173.05832 * 13 12 10 41 41 H 1.08992 * 109.60517 * 293.53943 * 13 12 10 42 42 H 0.97004 * 120.00336 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.60042 * 294.58823 * 23 14 13 44 44 H 1.09000 * 109.73004 * 174.18321 * 23 14 13 45 45 H 1.08998 * 109.47212 * 55.91475 * 24 10 9 46 46 H 1.09003 * 109.47392 * 175.92545 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4183 2.4569 -0.0006 5 6 3.6429 1.1519 0.0006 6 8 4.2506 1.4021 1.0238 7 7 4.3172 0.8748 -1.1330 8 6 3.7141 0.6503 -2.4557 9 6 4.8685 0.3927 -3.4490 10 6 6.0828 1.0271 -2.7372 11 6 5.7825 0.7458 -1.2520 12 6 7.3703 0.3395 -3.1651 13 6 7.6006 0.5738 -4.6629 14 7 7.5423 2.0178 -4.9280 15 6 8.5762 2.6510 -5.5645 16 1 9.5967 2.3779 -5.3403 17 6 8.3126 3.6440 -6.4980 18 7 7.0696 3.9229 -6.8289 19 14 9.7219 4.5844 -7.2846 20 1 10.6061 3.6365 -8.0091 21 1 9.1786 5.5827 -8.2402 22 1 10.5016 5.2812 -6.2301 23 6 6.3562 2.7712 -4.4982 24 6 6.1332 2.5243 -3.0013 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8898 28 1 2.0470 -0.9352 0.0004 29 1 1.1693 2.7322 -1.0254 30 1 0.5018 2.3474 0.5792 31 1 2.0388 3.2349 0.4441 32 1 3.1521 1.5329 -2.7612 33 1 3.0537 -0.2162 -2.4221 34 1 4.6766 0.8886 -4.4006 35 1 5.0215 -0.6767 -3.5939 36 1 6.0975 -0.2630 -0.9855 37 1 6.2807 1.4796 -0.6185 38 1 8.2070 0.7503 -2.6001 39 1 7.2922 -0.7306 -2.9726 40 1 8.5802 0.1893 -4.9468 41 1 6.8255 0.0652 -5.2361 42 1 6.8853 4.6166 -7.4814 43 1 5.4849 2.4323 -5.0585 44 1 6.5127 3.8355 -4.6738 45 1 5.1915 2.9793 -2.6942 46 1 6.9524 2.9660 -2.4339 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040660409.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:04 Heat of formation + Delta-G solvation = -8.562915 kcal Electronic energy + Delta-G solvation = -24514.527985 eV Core-core repulsion = 21211.407892 eV Total energy + Delta-G solvation = -3303.120093 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.41762 -38.61347 -35.80095 -35.70722 -33.02455 -30.88002 -30.01137 -29.55036 -29.45858 -27.38296 -25.98586 -24.02108 -23.09528 -22.20466 -21.23894 -20.32819 -18.68849 -17.75957 -16.92033 -16.30435 -16.02941 -15.61676 -14.91699 -14.50830 -14.12533 -14.03959 -13.66429 -13.53583 -13.45646 -13.00831 -12.97585 -12.77804 -12.68014 -12.54516 -12.30819 -12.09628 -12.07638 -11.53363 -11.52021 -11.25971 -10.99913 -10.78216 -10.71365 -10.51076 -10.20682 -10.13466 -9.88324 -9.86063 -9.51694 -9.41159 -9.13460 -8.52500 -8.45630 -6.47860 -5.80398 -3.35873 1.60927 2.64337 3.14035 3.37151 3.42174 3.43390 4.40198 4.47692 4.73004 4.78868 4.90118 5.03770 5.11880 5.14827 5.29601 5.34925 5.41225 5.42651 5.48756 5.52685 5.61045 5.64452 5.69822 5.76128 5.83013 5.94958 5.96710 6.11015 6.12618 6.20165 6.28042 6.31955 6.39003 6.43591 6.53306 6.66007 6.72128 6.76382 6.88705 7.00205 7.36902 7.58881 7.66869 7.80141 8.17802 8.53336 9.24373 9.82406 10.45602 11.27365 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.028150 B = 0.003632 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.449593 B = 7706.700835 C = 7942.036266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.124 4.124 3 C -0.156 4.156 4 C -0.106 4.106 5 C 0.568 3.432 6 O -0.544 6.544 7 N -0.607 5.607 8 C 0.105 3.895 9 C -0.124 4.124 10 C -0.054 4.054 11 C 0.111 3.889 12 C -0.119 4.119 13 C 0.149 3.851 14 N -0.590 5.590 15 C -0.259 4.259 16 H 0.059 0.941 17 C 0.013 3.987 18 N -0.902 5.902 19 Si 0.902 3.098 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.283 1.283 23 C 0.178 3.822 24 C -0.126 4.126 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.112 0.888 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.019 0.981 42 H 0.255 0.745 43 H 0.020 0.980 44 H 0.079 0.921 45 H 0.047 0.953 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.277 -7.981 9.659 17.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.143 4.143 3 C -0.159 4.159 4 C -0.163 4.163 5 C 0.357 3.643 6 O -0.422 6.422 7 N -0.340 5.340 8 C -0.018 4.018 9 C -0.161 4.161 10 C -0.055 4.055 11 C -0.011 4.011 12 C -0.158 4.158 13 C 0.022 3.978 14 N -0.313 5.313 15 C -0.390 4.390 16 H 0.077 0.923 17 C -0.186 4.186 18 N -0.545 5.545 19 Si 0.732 3.268 20 H -0.208 1.208 21 H -0.216 1.216 22 H -0.209 1.209 23 C 0.052 3.948 24 C -0.165 4.165 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.130 0.870 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.037 0.963 42 H 0.065 0.935 43 H 0.038 0.962 44 H 0.097 0.903 45 H 0.065 0.935 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.057 -7.692 10.128 17.525 hybrid contribution 0.708 0.458 -0.450 0.956 sum -11.350 -7.234 9.678 16.577 Atomic orbital electron populations 1.20865 0.92070 1.02623 1.02369 1.23183 0.96488 0.96660 0.97978 1.21409 0.92556 0.97202 1.04771 1.20701 0.99532 0.93596 1.02502 1.18178 0.87504 0.76338 0.82299 1.90801 1.70042 1.49306 1.32082 1.48582 1.08128 1.69111 1.08204 1.22094 0.96727 1.00736 0.82239 1.22725 0.93445 1.01196 0.98783 1.20989 0.95248 0.97542 0.91755 1.22399 0.79674 1.01044 0.97934 1.21861 0.95796 0.97899 1.00263 1.20925 0.98734 0.87008 0.91126 1.43893 1.19062 1.01276 1.67069 1.19047 0.86872 1.17443 1.15592 0.92338 1.25373 0.96065 1.00712 0.96479 1.69925 1.17424 1.32960 1.34159 0.86391 0.81860 0.79449 0.79112 1.20783 1.21597 1.20883 1.20745 0.88699 0.98167 0.87159 1.22031 0.99985 0.92593 1.01916 0.90991 0.91761 0.91106 0.86995 0.90710 0.90907 0.91449 0.91422 0.91861 0.88773 0.91006 0.91860 0.90589 0.92127 0.92958 0.92825 0.96332 0.93526 0.96170 0.90277 0.93464 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 8.97 36.01 0.32 -0.51 16 2 C -0.12 -1.20 9.88 -36.12 -0.36 -1.56 16 3 C -0.16 -1.86 4.93 -102.84 -0.51 -2.36 16 4 C -0.11 -1.05 9.47 36.01 0.34 -0.71 16 5 C 0.57 8.80 7.20 -12.66 -0.09 8.71 16 6 O -0.54 -10.50 17.35 5.27 0.09 -10.41 16 7 N -0.61 -8.83 3.32 -172.15 -0.57 -9.40 16 8 C 0.10 1.31 6.09 -2.96 -0.02 1.30 16 9 C -0.12 -1.74 4.92 -25.24 -0.12 -1.86 16 10 C -0.05 -0.87 0.55 -154.10 -0.08 -0.95 16 11 C 0.11 1.70 5.84 -2.87 -0.02 1.69 16 12 C -0.12 -1.96 4.84 -27.01 -0.13 -2.09 16 13 C 0.15 2.98 6.24 -3.63 -0.02 2.95 16 14 N -0.59 -14.30 2.94 -172.13 -0.51 -14.81 16 15 C -0.26 -7.01 9.49 -15.06 -0.14 -7.15 16 16 H 0.06 1.57 7.83 -52.49 -0.41 1.16 16 17 C 0.01 0.37 5.15 -17.43 -0.09 0.28 16 18 N -0.90 -25.59 11.28 55.49 0.63 -24.97 16 19 Si 0.90 21.42 29.56 -169.99 -5.02 16.40 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.18 4.06 4.91 -3.63 -0.02 4.05 16 24 C -0.13 -2.37 4.85 -27.01 -0.13 -2.50 16 25 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.45 7.41 -51.93 -0.38 0.06 16 28 H 0.11 1.08 8.05 -52.49 -0.42 0.66 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.57 6.67 -51.93 -0.35 0.22 16 31 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.67 8.06 -51.93 -0.42 0.25 16 34 H 0.09 1.48 6.17 -51.93 -0.32 1.16 16 35 H 0.07 0.92 7.98 -51.93 -0.41 0.50 16 36 H 0.06 0.90 7.99 -51.93 -0.41 0.49 16 37 H 0.08 1.28 7.90 -51.93 -0.41 0.87 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.05 0.74 8.09 -51.93 -0.42 0.32 16 40 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 41 H 0.02 0.37 7.62 -51.93 -0.40 -0.02 16 42 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.02 0.48 6.55 -51.93 -0.34 0.14 16 44 H 0.08 2.07 6.48 -51.93 -0.34 1.74 16 45 H 0.05 0.85 7.82 -51.93 -0.41 0.44 16 46 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 356.83 15.07 5.38 5.38 Total: -1.00 -30.93 356.83 -9.02 -39.95 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -7.94 Total: -1.40 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -1.07 Total: -0.73 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: -0.45 Total: -49.18 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.93 -9.02 -39.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040660409.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.385 kcal (2) G-P(sol) polarization free energy of solvation -30.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds