Wall clock time and date at job start Tue Mar 31 2020 07:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50705 * 119.99526 * 2 1 4 4 C 1.53000 * 109.46617 * 239.99558 * 3 2 1 5 5 C 1.52999 * 109.47027 * 359.97438 * 3 2 1 6 6 C 1.50697 * 109.47175 * 119.99915 * 3 2 1 7 7 O 1.21287 * 120.00187 * 359.18609 * 6 3 2 8 8 N 1.34776 * 120.00111 * 179.19565 * 6 3 2 9 9 C 1.46594 * 119.74811 * 355.15657 * 8 6 3 10 10 C 1.52834 * 110.57953 * 132.50180 * 9 8 6 11 11 C 1.51978 * 107.96896 * 51.59197 * 10 9 8 12 12 H 1.09002 * 111.01990 * 56.94459 * 11 10 9 13 13 C 1.53698 * 115.60686 * 184.67965 * 11 10 9 14 14 C 1.55304 * 101.81098 * 153.71349 * 13 11 10 15 15 N 1.48152 * 107.04389 * 337.54876 * 14 13 11 16 16 C 1.36940 * 126.39545 * 174.99660 * 15 14 13 17 17 H 1.08007 * 119.99701 * 180.02562 * 16 15 14 18 18 C 1.38806 * 120.00322 * 0.02562 * 16 15 14 19 19 N 1.31620 * 119.99876 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00286 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47247 * 89.99053 * 20 18 16 22 22 H 1.48491 * 109.47210 * 209.99626 * 20 18 16 23 23 H 1.48500 * 109.46978 * 329.99722 * 20 18 16 24 24 C 1.45502 * 107.20450 * 355.00393 * 15 14 13 25 25 H 1.08999 * 108.98827 * 273.63760 * 24 15 14 26 26 C 1.47790 * 119.75491 * 175.43326 * 8 6 3 27 27 H 1.07993 * 120.00611 * 0.02562 * 1 2 3 28 28 H 1.08007 * 119.99565 * 179.72803 * 1 2 3 29 29 H 1.07995 * 119.99917 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47074 * 70.06043 * 4 3 2 31 31 H 1.09005 * 109.46849 * 190.05529 * 4 3 2 32 32 H 1.08995 * 109.46975 * 310.05847 * 4 3 2 33 33 H 1.08999 * 109.47234 * 49.38767 * 5 3 2 34 34 H 1.08998 * 109.46649 * 169.38913 * 5 3 2 35 35 H 1.09000 * 109.46860 * 289.38126 * 5 3 2 36 36 H 1.09004 * 109.23076 * 252.57283 * 9 8 6 37 37 H 1.08992 * 109.23216 * 11.94595 * 9 8 6 38 38 H 1.08996 * 109.20369 * 292.13356 * 10 9 8 39 39 H 1.09002 * 109.96551 * 171.48383 * 10 9 8 40 40 H 1.09001 * 110.96069 * 271.83757 * 13 11 10 41 41 H 1.09000 * 110.96339 * 35.54963 * 13 11 10 42 42 H 1.09001 * 109.91976 * 96.90804 * 14 13 11 43 43 H 1.09001 * 109.91521 * 218.00487 * 14 13 11 44 44 H 0.96999 * 119.99983 * 179.97438 * 19 18 16 45 45 H 1.09003 * 110.06811 * 350.47471 * 26 8 6 46 46 H 1.09006 * 110.06418 * 112.03383 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.9431 1.3862 -1.2492 5 6 1.0691 2.4680 -0.0006 6 6 2.9298 1.3851 1.2304 7 8 2.9238 0.4787 2.0363 8 7 3.7111 2.4640 1.4356 9 6 3.7955 3.5068 0.4088 10 6 3.6273 4.8912 1.0340 11 6 4.6033 5.0037 2.1935 12 1 5.6266 4.8283 1.8617 13 6 4.5038 6.2940 3.0227 14 6 5.0478 5.8289 4.4010 15 7 4.8813 4.3579 4.4596 16 6 5.3175 3.5299 5.4593 17 1 5.1396 2.4665 5.3959 18 6 5.9882 4.0574 6.5542 19 7 6.2053 5.3532 6.6312 20 14 6.5838 2.9279 7.9176 21 1 7.9610 2.4648 7.6106 22 1 6.5853 3.6656 9.2063 23 1 5.6786 1.7551 8.0197 24 6 4.1679 3.9573 3.2564 25 1 3.0960 4.0429 3.4345 26 6 4.4812 2.5838 2.6913 27 1 -0.5401 0.9352 -0.0004 28 1 -0.5400 -0.9354 -0.0044 29 1 1.8500 -0.9353 0.0004 30 1 2.3128 1.5082 -2.1301 31 1 3.6175 2.2383 -1.1641 32 1 3.5256 0.4697 -1.3434 33 1 0.3242 2.3096 0.7792 34 1 1.6006 3.4006 0.1886 35 1 0.5742 2.5223 -0.9703 36 1 4.7685 3.4519 -0.0796 37 1 3.0129 3.3450 -0.3324 38 1 2.6054 4.9987 1.3975 39 1 3.8405 5.6623 0.2937 40 1 5.1319 7.0784 2.6003 41 1 3.4690 6.6268 3.1035 42 1 6.1030 6.0872 4.4902 43 1 4.4808 6.3019 5.2028 44 1 6.6737 5.7218 7.3965 45 1 4.1722 1.8106 3.3948 46 1 5.5482 2.4987 2.4853 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042185605.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:01 Heat of formation + Delta-G solvation = 35.174673 kcal Electronic energy + Delta-G solvation = -25151.492037 eV Core-core repulsion = 21850.268548 eV Total energy + Delta-G solvation = -3301.223489 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.81595 -38.53698 -36.39010 -35.46081 -32.89810 -31.56274 -30.95835 -29.15758 -28.34007 -27.61977 -25.15665 -24.35332 -23.01857 -22.16233 -20.56831 -19.97087 -19.35791 -18.23487 -16.76304 -16.43929 -16.21352 -15.23024 -15.04520 -14.70533 -14.45782 -14.27462 -13.97727 -13.72691 -13.54376 -13.07435 -12.72650 -12.54306 -12.36884 -12.32357 -12.16591 -11.86683 -11.64507 -11.49172 -11.39051 -11.07355 -10.90184 -10.79678 -10.73749 -10.60754 -10.13811 -9.95327 -9.84189 -9.67148 -9.64332 -9.46096 -9.23890 -8.61398 -8.37400 -6.84013 -5.70496 -3.04103 2.17990 2.82373 3.22623 3.42854 3.48539 3.50924 4.40290 4.52097 4.55054 4.77654 4.86329 4.89253 4.99813 5.13922 5.26221 5.33101 5.39181 5.45293 5.51606 5.52198 5.60934 5.62612 5.69473 5.78007 5.80686 5.91514 5.96261 5.98384 6.06232 6.10375 6.16653 6.17529 6.39957 6.49677 6.52707 6.57821 6.67279 6.74181 6.77484 7.07228 7.56189 7.59804 7.65236 7.82475 8.24414 8.39227 9.20701 9.83614 10.50183 11.41873 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.020431 B = 0.004761 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.124509 B = 5879.474561 C = 6823.869951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 C -0.056 4.056 4 C -0.157 4.157 5 C -0.159 4.159 6 C 0.522 3.478 7 O -0.538 6.538 8 N -0.603 5.603 9 C 0.086 3.914 10 C -0.122 4.122 11 C -0.111 4.111 12 H 0.076 0.924 13 C -0.137 4.137 14 C 0.177 3.823 15 N -0.593 5.593 16 C -0.228 4.228 17 H 0.079 0.921 18 C -0.006 4.006 19 N -0.922 5.922 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.280 1.280 24 C 0.156 3.844 25 H 0.023 0.977 26 C 0.117 3.883 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.105 0.895 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.037 0.963 44 H 0.252 0.748 45 H 0.090 0.910 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.207 -2.082 -18.482 20.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.137 4.137 3 C -0.059 4.059 4 C -0.214 4.214 5 C -0.216 4.216 6 C 0.310 3.690 7 O -0.414 6.414 8 N -0.337 5.337 9 C -0.037 4.037 10 C -0.161 4.161 11 C -0.131 4.131 12 H 0.094 0.906 13 C -0.175 4.175 14 C 0.053 3.947 15 N -0.318 5.318 16 C -0.356 4.356 17 H 0.097 0.903 18 C -0.202 4.202 19 N -0.569 5.569 20 Si 0.740 3.260 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.206 1.206 24 C 0.047 3.953 25 H 0.041 0.959 26 C -0.005 4.005 27 H 0.121 0.879 28 H 0.116 0.884 29 H 0.130 0.870 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.122 0.878 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.109 0.891 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.075 -2.540 -17.794 19.705 hybrid contribution 0.411 -0.527 0.853 1.084 sum -7.665 -3.068 -16.942 18.846 Atomic orbital electron populations 1.23949 0.95885 1.02122 1.01575 1.22508 0.95614 0.96620 0.98933 1.19854 0.95706 0.95820 0.94519 1.22295 0.99813 1.03730 0.95595 1.22300 0.99041 0.97293 1.02974 1.20397 0.79699 0.81877 0.87076 1.90689 1.66340 1.37610 1.46808 1.48218 1.45660 1.20463 1.19332 1.22221 1.02587 0.88028 0.90835 1.21650 1.00412 0.95616 0.98413 1.22229 0.98596 0.97797 0.94501 0.90572 1.22715 1.00295 0.95971 0.98555 1.21533 0.99727 0.82904 0.90523 1.44180 1.66168 1.03183 1.18250 1.19048 1.29886 0.89744 0.96896 0.90312 1.24770 1.00873 0.96043 0.98534 1.69942 1.46418 1.09891 1.30690 0.86148 0.78737 0.79598 0.81530 1.21580 1.21683 1.20599 1.20995 0.95276 0.91571 0.87416 0.95925 1.21713 0.94983 0.99831 0.84009 0.87872 0.88395 0.86987 0.91327 0.90101 0.91875 0.91389 0.90391 0.91195 0.91788 0.87775 0.91488 0.90832 0.92243 0.92584 0.92667 0.94448 0.93787 0.89137 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.03 13.71 29.01 0.40 -1.64 16 2 C -0.12 -1.40 7.98 -36.02 -0.29 -1.69 16 3 C -0.06 -0.64 0.72 -156.81 -0.11 -0.76 16 4 C -0.16 -1.41 8.06 37.16 0.30 -1.11 16 5 C -0.16 -1.53 6.81 37.16 0.25 -1.28 16 6 C 0.52 8.40 6.47 -10.99 -0.07 8.32 16 7 O -0.54 -10.97 15.43 5.55 0.09 -10.88 16 8 N -0.60 -9.35 3.00 -173.39 -0.52 -9.87 16 9 C 0.09 0.99 3.71 -4.08 -0.02 0.97 16 10 C -0.12 -1.51 5.50 -27.34 -0.15 -1.66 16 11 C -0.11 -1.86 2.61 -89.51 -0.23 -2.10 16 12 H 0.08 1.32 8.13 -51.93 -0.42 0.90 16 13 C -0.14 -2.47 6.57 -25.15 -0.17 -2.63 16 14 C 0.18 4.25 5.45 -1.91 -0.01 4.24 16 15 N -0.59 -15.03 3.35 -162.91 -0.55 -15.57 16 16 C -0.23 -6.37 9.88 -15.06 -0.15 -6.52 16 17 H 0.08 2.17 7.41 -52.48 -0.39 1.79 16 18 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 19 N -0.92 -27.11 10.44 55.49 0.58 -26.53 16 20 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 C 0.16 3.23 2.75 -67.82 -0.19 3.04 16 25 H 0.02 0.51 7.96 -51.93 -0.41 0.10 16 26 C 0.12 2.26 5.67 -3.95 -0.02 2.24 16 27 H 0.10 0.94 5.67 -52.49 -0.30 0.65 16 28 H 0.10 0.88 8.06 -52.48 -0.42 0.46 16 29 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.07 0.48 8.01 -51.93 -0.42 0.06 16 31 H 0.08 0.67 4.35 -51.93 -0.23 0.45 16 32 H 0.06 0.59 8.11 -51.93 -0.42 0.17 16 33 H 0.07 0.72 6.79 -51.93 -0.35 0.36 16 34 H 0.08 0.73 4.57 -51.93 -0.24 0.50 16 35 H 0.07 0.51 7.92 -51.93 -0.41 0.10 16 36 H 0.06 0.68 7.91 -51.93 -0.41 0.27 16 37 H 0.10 0.94 2.74 -51.93 -0.14 0.80 16 38 H 0.07 0.84 7.63 -51.93 -0.40 0.45 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 42 H 0.06 1.46 7.21 -51.93 -0.37 1.09 16 43 H 0.04 0.99 7.77 -51.93 -0.40 0.59 16 44 H 0.25 7.21 8.31 -40.82 -0.34 6.88 16 45 H 0.09 2.00 6.79 -51.93 -0.35 1.65 16 46 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 340.40 15.07 5.13 5.13 Total: -1.00 -32.38 340.40 -8.18 -40.56 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -7.34 Total: 0.47 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -0.55 Total: -0.82 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -0.49 Total: -51.97 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.38 -8.18 -40.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042185605.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.732 kcal (2) G-P(sol) polarization free energy of solvation -32.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds