Wall clock time and date at job start Tue Mar 31 2020 07:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 120.00125 * 2 1 4 4 C 1.53004 * 109.46886 * 0.02562 * 3 2 1 5 5 C 1.53001 * 109.47078 * 240.00192 * 3 2 1 6 6 C 1.50706 * 109.47140 * 120.00092 * 3 2 1 7 7 O 1.21282 * 119.99616 * 9.75229 * 6 3 2 8 8 N 1.34776 * 119.99578 * 189.74597 * 6 3 2 9 9 C 1.44752 * 117.19037 * 356.69420 * 8 6 3 10 10 C 1.52354 * 111.58232 * 214.12451 * 9 8 6 11 11 C 1.49432 * 113.58047 * 316.51822 * 10 9 8 12 12 H 1.08998 * 107.27064 * 166.95277 * 11 10 9 13 13 C 1.54529 * 112.97878 * 285.00825 * 11 10 9 14 14 C 1.55253 * 100.53899 * 166.32791 * 13 11 10 15 15 N 1.47467 * 105.14533 * 323.74897 * 14 13 11 16 16 C 1.36945 * 125.66396 * 200.96331 * 15 14 13 17 17 H 1.08001 * 119.99879 * 180.02562 * 16 15 14 18 18 C 1.38815 * 119.99786 * 0.02929 * 16 15 14 19 19 N 1.31617 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99675 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46995 * 59.99885 * 20 18 16 22 22 H 1.48492 * 109.46984 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46851 * 300.00048 * 20 18 16 24 24 C 1.48532 * 108.53882 * 20.99174 * 15 14 13 25 25 H 1.08991 * 109.25654 * 121.36223 * 24 15 14 26 26 C 1.43786 * 117.17998 * 176.70837 * 8 6 3 27 27 H 1.08004 * 120.00076 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.00217 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.99584 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46952 * 179.97438 * 4 3 2 31 31 H 1.08994 * 109.47172 * 300.00047 * 4 3 2 32 32 H 1.08997 * 109.46775 * 60.00543 * 4 3 2 33 33 H 1.08999 * 109.47179 * 325.17644 * 5 3 2 34 34 H 1.09001 * 109.46673 * 85.17347 * 5 3 2 35 35 H 1.09004 * 109.46847 * 205.17209 * 5 3 2 36 36 H 1.08995 * 109.03021 * 334.31619 * 9 8 6 37 37 H 1.08998 * 109.03581 * 93.24773 * 9 8 6 38 38 H 1.09000 * 108.18753 * 195.92573 * 10 9 8 39 39 H 1.08999 * 109.46087 * 78.02220 * 10 9 8 40 40 H 1.08992 * 111.19492 * 48.50509 * 13 11 10 41 41 H 1.08997 * 111.23466 * 284.16422 * 13 11 10 42 42 H 1.08991 * 110.32883 * 82.70176 * 14 13 11 43 43 H 1.09001 * 110.32098 * 204.80676 * 14 13 11 44 44 H 0.96998 * 119.99921 * 180.02562 * 19 18 16 45 45 H 1.08995 * 108.06155 * 35.55894 * 26 8 6 46 46 H 1.09000 * 108.03138 * 279.04258 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 1.0693 2.4680 0.0006 5 6 2.9431 1.3861 -1.2493 6 6 2.9300 1.3849 1.2305 7 8 3.0734 0.4084 1.9354 8 7 3.5455 2.5413 1.5473 9 6 3.3920 3.6465 0.6252 10 6 4.6474 4.5080 0.5692 11 6 5.2404 4.7882 1.9118 12 1 6.2368 5.1980 1.7463 13 6 4.4404 5.8361 2.7179 14 6 5.0579 5.6409 4.1289 15 7 5.3168 4.1934 4.2393 16 6 5.4717 3.4968 5.4082 17 1 5.6595 2.4336 5.3823 18 6 5.3874 4.1574 6.6261 19 7 5.1581 5.4531 6.6576 20 14 5.5981 3.2071 8.2205 21 1 6.9421 2.5761 8.2468 22 1 5.4639 4.1356 9.3716 23 1 4.5549 2.1540 8.3105 24 6 5.3818 3.6196 2.8709 25 1 6.3537 3.1486 2.7243 26 6 4.2981 2.5706 2.7721 27 1 -0.5400 0.9353 0.0004 28 1 -0.5401 -0.9353 0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.6143 3.4120 0.0011 31 1 0.4423 2.4104 -0.8890 32 1 0.4431 2.4100 0.8909 33 1 3.3162 0.3921 -1.4961 34 1 2.3556 1.7710 -2.0828 35 1 3.7841 2.0530 -1.0589 36 1 3.1916 3.2528 -0.3712 37 1 2.5478 4.2589 0.9417 38 1 4.3881 5.4568 0.0995 39 1 5.3995 4.0142 -0.0461 40 1 3.3755 5.6040 2.7181 41 1 4.6215 6.8439 2.3444 42 1 5.9896 6.1999 4.2151 43 1 4.3537 5.9593 4.8977 44 1 5.0996 5.9147 7.5087 45 1 4.7607 1.5930 2.9079 46 1 3.5995 2.7280 3.5938 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042185606.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:06 Heat of formation + Delta-G solvation = 42.695780 kcal Electronic energy + Delta-G solvation = -25275.724644 eV Core-core repulsion = 21974.827295 eV Total energy + Delta-G solvation = -3300.897349 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.97110 -38.53263 -36.42079 -35.42121 -33.12873 -31.75633 -30.92768 -29.18071 -28.41480 -27.53690 -25.29833 -24.39625 -23.17750 -22.61945 -20.71252 -20.21274 -18.47486 -17.61866 -17.01277 -16.54223 -16.03227 -15.44252 -14.99081 -14.84311 -14.68020 -14.50734 -14.01640 -13.80199 -13.41319 -13.18316 -12.67358 -12.60111 -12.26792 -12.15462 -12.08193 -11.89833 -11.61158 -11.42072 -11.29716 -11.04061 -10.94176 -10.83284 -10.74762 -10.53841 -10.11062 -9.94423 -9.84827 -9.63619 -9.61264 -9.49739 -9.20317 -8.63783 -8.13158 -6.89022 -5.66070 -3.06626 2.20420 2.86924 3.39649 3.43769 3.47269 3.49189 4.43728 4.47927 4.57152 4.84319 4.87204 4.96963 5.00071 5.09033 5.29616 5.34690 5.37238 5.44436 5.50636 5.55154 5.57688 5.64149 5.67573 5.77783 5.86491 5.89673 5.97151 6.00649 6.07905 6.10186 6.20705 6.25428 6.49313 6.54881 6.58324 6.65400 6.70585 6.83217 7.01668 7.13355 7.51974 7.63073 7.69342 7.84962 8.31742 8.48091 9.21428 9.80868 10.45527 11.39045 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.019574 B = 0.004932 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.161017 B = 5675.402425 C = 6563.689425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 C -0.056 4.056 4 C -0.174 4.174 5 C -0.146 4.146 6 C 0.511 3.489 7 O -0.538 6.538 8 N -0.585 5.585 9 C 0.092 3.908 10 C -0.114 4.114 11 C -0.093 4.093 12 H 0.064 0.936 13 C -0.140 4.140 14 C 0.157 3.843 15 N -0.597 5.597 16 C -0.224 4.224 17 H 0.077 0.923 18 C -0.008 4.008 19 N -0.922 5.922 20 Si 0.913 3.087 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.164 3.836 25 H 0.039 0.961 26 C 0.106 3.894 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.015 0.985 43 H 0.097 0.903 44 H 0.252 0.748 45 H 0.065 0.935 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.527 -2.121 -18.310 19.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.137 4.137 3 C -0.059 4.059 4 C -0.230 4.230 5 C -0.203 4.203 6 C 0.298 3.702 7 O -0.415 6.415 8 N -0.317 5.317 9 C -0.031 4.031 10 C -0.153 4.153 11 C -0.112 4.112 12 H 0.082 0.918 13 C -0.179 4.179 14 C 0.033 3.967 15 N -0.323 5.323 16 C -0.352 4.352 17 H 0.095 0.905 18 C -0.203 4.203 19 N -0.570 5.570 20 Si 0.743 3.257 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.056 3.944 25 H 0.057 0.943 26 C -0.019 4.019 27 H 0.121 0.879 28 H 0.116 0.884 29 H 0.131 0.869 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.033 0.967 43 H 0.115 0.885 44 H 0.063 0.937 45 H 0.084 0.916 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.381 -2.525 -17.618 18.908 hybrid contribution 0.219 -0.487 0.974 1.111 sum -6.162 -3.012 -16.644 18.002 Atomic orbital electron populations 1.23949 0.95900 1.02086 1.01671 1.22561 0.95570 0.96704 0.98870 1.19843 0.95756 0.95806 0.94483 1.22648 0.99237 0.98362 1.02778 1.22034 0.99515 1.03146 0.95607 1.20513 0.80462 0.82898 0.86300 1.90676 1.62397 1.35877 1.52562 1.46727 1.50251 1.11516 1.23204 1.21810 0.98194 0.89076 0.94028 1.20848 0.96878 0.99859 0.97692 1.20619 1.00061 0.97009 0.93514 0.91778 1.23035 0.99156 0.96617 0.99074 1.21845 0.98324 0.84303 0.92247 1.45046 1.84040 1.04306 0.98869 1.19020 1.41670 0.91968 0.82554 0.90484 1.24760 1.02095 0.95888 0.97581 1.69848 1.55914 1.07040 1.24211 0.86179 0.78049 0.78593 0.82881 1.21169 1.21585 1.21081 1.20313 0.95109 0.91875 0.87102 0.94302 1.21374 0.95508 1.00807 0.84168 0.87927 0.88430 0.86886 0.89266 0.91404 0.91818 0.91610 0.91148 0.90882 0.88557 0.91722 0.90701 0.92028 0.92342 0.92246 0.96720 0.88536 0.93735 0.91645 0.91132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.10 13.70 29.01 0.40 -1.70 16 2 C -0.12 -1.44 7.88 -36.03 -0.28 -1.73 16 3 C -0.06 -0.66 0.72 -156.81 -0.11 -0.77 16 4 C -0.17 -1.72 6.52 37.16 0.24 -1.47 16 5 C -0.15 -1.35 8.06 37.16 0.30 -1.05 16 6 C 0.51 8.47 6.31 -10.98 -0.07 8.40 16 7 O -0.54 -11.20 15.37 5.56 0.09 -11.12 16 8 N -0.59 -9.51 3.12 -178.71 -0.56 -10.06 16 9 C 0.09 1.11 3.87 -5.31 -0.02 1.09 16 10 C -0.11 -1.40 5.51 -28.82 -0.16 -1.56 16 11 C -0.09 -1.54 2.43 -92.17 -0.22 -1.76 16 12 H 0.06 1.06 8.13 -51.93 -0.42 0.64 16 13 C -0.14 -2.52 6.53 -24.73 -0.16 -2.68 16 14 C 0.16 3.75 5.76 -2.32 -0.01 3.74 16 15 N -0.60 -15.02 2.93 -163.67 -0.48 -15.50 16 16 C -0.22 -6.24 9.63 -15.05 -0.15 -6.39 16 17 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 18 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 19 N -0.92 -26.85 10.15 55.49 0.56 -26.28 16 20 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 24 C 0.16 3.36 3.46 -68.33 -0.24 3.13 16 25 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 26 C 0.11 2.14 5.39 -6.42 -0.03 2.11 16 27 H 0.10 0.97 5.69 -52.48 -0.30 0.67 16 28 H 0.10 0.90 8.06 -52.48 -0.42 0.48 16 29 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.09 0.81 3.54 -51.93 -0.18 0.63 16 31 H 0.07 0.53 7.47 -51.93 -0.39 0.14 16 32 H 0.06 0.71 7.50 -51.93 -0.39 0.32 16 33 H 0.06 0.61 7.90 -51.93 -0.41 0.20 16 34 H 0.07 0.49 7.89 -51.93 -0.41 0.09 16 35 H 0.07 0.68 5.66 -51.93 -0.29 0.38 16 36 H 0.10 0.91 2.96 -51.93 -0.15 0.76 16 37 H 0.06 0.77 6.77 -51.93 -0.35 0.42 16 38 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 1.05 7.96 -51.93 -0.41 0.64 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.10 2.61 6.09 -51.93 -0.32 2.29 16 44 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 45 H 0.07 1.43 7.20 -51.93 -0.37 1.06 16 46 H 0.07 1.68 7.50 -51.93 -0.39 1.29 16 LS Contribution 338.86 15.07 5.11 5.11 Total: -1.00 -32.02 338.86 -8.22 -40.24 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.30 Total: 1.09 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -0.62 Total: -0.96 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: -0.47 Total: -51.85 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.02 -8.22 -40.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042185606.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.935 kcal (2) G-P(sol) polarization free energy of solvation -32.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds