Wall clock time and date at job start Tue Mar 31 2020 07:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 120.00264 * 2 1 4 4 C 1.52997 * 109.46809 * 359.97438 * 3 2 1 5 5 C 1.52996 * 109.47027 * 239.99461 * 3 2 1 6 6 C 1.50703 * 109.46990 * 119.99448 * 3 2 1 7 7 O 1.21277 * 120.00267 * 352.58573 * 6 3 2 8 8 N 1.34775 * 119.99525 * 172.58650 * 6 3 2 9 9 C 1.44453 * 117.12179 * 355.18070 * 8 6 3 10 10 C 1.50917 * 113.26149 * 149.61735 * 9 8 6 11 11 C 1.48710 * 116.02740 * 32.33125 * 10 9 8 12 12 H 1.09002 * 106.55290 * 200.78233 * 11 10 9 13 13 C 1.54298 * 114.10041 * 83.38263 * 11 10 9 14 14 C 1.55321 * 100.38965 * 191.23357 * 13 11 10 15 15 N 1.47460 * 105.13965 * 36.12379 * 14 13 11 16 16 C 1.36940 * 125.62769 * 159.94399 * 15 14 13 17 17 H 1.08000 * 119.99961 * 180.02562 * 16 15 14 18 18 C 1.38807 * 120.00359 * 0.02562 * 16 15 14 19 19 N 1.31622 * 120.00026 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 120.00284 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46652 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46970 * 119.99700 * 20 18 16 23 23 H 1.48497 * 109.46772 * 240.00125 * 20 18 16 24 24 C 1.48456 * 108.74060 * 339.92203 * 15 14 13 25 25 H 1.09003 * 109.94358 * 235.82185 * 24 15 14 26 26 C 1.43929 * 117.11763 * 175.16092 * 8 6 3 27 27 H 1.08001 * 119.99958 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.00496 * 179.97438 * 1 2 3 29 29 H 1.07995 * 119.99718 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.46797 * 168.63539 * 4 3 2 31 31 H 1.08997 * 109.47178 * 288.63091 * 4 3 2 32 32 H 1.08995 * 109.47694 * 48.63614 * 4 3 2 33 33 H 1.08996 * 109.47369 * 277.36439 * 5 3 2 34 34 H 1.09000 * 109.47060 * 37.36561 * 5 3 2 35 35 H 1.09003 * 109.46977 * 157.36223 * 5 3 2 36 36 H 1.09005 * 108.72581 * 270.59134 * 9 8 6 37 37 H 1.09000 * 108.72543 * 28.64249 * 9 8 6 38 38 H 1.09001 * 108.16669 * 154.01265 * 10 9 8 39 39 H 1.08993 * 108.17304 * 270.59931 * 10 9 8 40 40 H 1.09004 * 111.23496 * 73.43637 * 13 11 10 41 41 H 1.08995 * 111.23753 * 309.03274 * 13 11 10 42 42 H 1.09005 * 110.30727 * 155.04608 * 14 13 11 43 43 H 1.09003 * 110.30775 * 277.10428 * 14 13 11 44 44 H 0.97003 * 120.00103 * 180.02562 * 19 18 16 45 45 H 1.09004 * 108.41493 * 89.64636 * 26 8 6 46 46 H 1.08997 * 108.41816 * 332.40691 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9433 1.3860 -1.2491 6 6 2.9299 1.3849 1.2306 7 8 2.8361 0.5386 2.0941 8 7 3.8088 2.3969 1.3713 9 6 3.9460 3.3093 0.2599 10 6 4.3137 4.7110 0.6814 11 6 5.1673 4.8251 1.8938 12 1 5.0331 5.8378 2.2739 13 6 6.6760 4.6522 1.6206 14 6 7.2114 4.5288 3.0733 15 7 6.1724 3.7802 3.8044 16 6 6.3553 3.1046 4.9815 17 1 5.5272 2.5843 5.4397 18 6 7.6049 3.0884 5.5856 19 7 8.6140 3.7229 5.0274 20 14 7.8542 2.1674 7.1916 21 1 6.5727 1.5432 7.6082 22 1 8.8803 1.1109 7.0022 23 1 8.3075 3.1156 8.2407 24 6 4.8954 3.8802 3.0540 25 1 4.1155 4.2841 3.6996 26 6 4.5276 2.4732 2.6159 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5401 -0.9352 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.5990 3.3989 0.2019 31 1 0.5841 2.5306 -0.9746 32 1 0.3167 2.3031 0.7703 33 1 3.8734 0.8454 -1.0742 34 1 2.4173 0.9403 -2.0934 35 1 3.1658 2.4300 -1.4698 36 1 4.7185 2.9314 -0.4099 37 1 3.0016 3.3437 -0.2833 38 1 4.8353 5.1894 -0.1475 39 1 3.3922 5.2648 0.8608 40 1 7.0896 5.5279 1.1203 41 1 6.8723 3.7451 1.0491 42 1 8.1525 3.9788 3.0843 43 1 7.3468 5.5175 3.5119 44 1 9.4874 3.7112 5.4494 45 1 5.4445 1.8916 2.5203 46 1 3.9160 2.0187 3.3953 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042185607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:11 Heat of formation + Delta-G solvation = 39.694981 kcal Electronic energy + Delta-G solvation = -25220.038055 eV Core-core repulsion = 21919.010581 eV Total energy + Delta-G solvation = -3301.027473 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.97062 -38.54923 -36.43619 -35.48370 -33.14167 -31.78157 -30.96326 -29.11689 -28.37376 -27.64262 -25.35795 -24.38970 -23.22411 -22.48873 -20.72466 -20.18599 -18.51566 -17.49470 -17.00527 -16.57693 -16.24779 -15.54676 -14.97638 -14.88611 -14.67573 -14.25350 -14.01660 -13.90854 -13.59332 -12.86027 -12.81408 -12.48544 -12.28919 -12.26133 -12.16336 -11.85444 -11.64829 -11.43890 -11.38525 -11.04731 -10.94476 -10.82126 -10.76978 -10.60144 -10.05527 -9.93443 -9.82379 -9.63089 -9.60561 -9.50257 -9.23475 -8.64451 -8.14868 -6.88857 -5.66767 -3.06792 2.20184 2.85398 3.39050 3.42535 3.48442 3.50924 4.39401 4.48590 4.59822 4.75499 4.88464 4.96210 4.97687 5.08250 5.25255 5.32224 5.37240 5.45818 5.49183 5.54437 5.58187 5.62205 5.66174 5.78385 5.83140 5.90033 5.99013 6.01776 6.04344 6.10152 6.23674 6.27253 6.48817 6.52617 6.59051 6.63588 6.68399 6.87723 6.99165 7.12459 7.52108 7.63002 7.69955 7.84864 8.30647 8.47711 9.21349 9.80744 10.44929 11.39016 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.020886 B = 0.004786 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.284581 B = 5849.033368 C = 6803.396487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 C -0.057 4.057 4 C -0.154 4.154 5 C -0.153 4.153 6 C 0.510 3.490 7 O -0.537 6.537 8 N -0.586 5.586 9 C 0.092 3.908 10 C -0.112 4.112 11 C -0.093 4.093 12 H 0.061 0.939 13 C -0.140 4.140 14 C 0.160 3.840 15 N -0.597 5.597 16 C -0.223 4.223 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.163 3.837 25 H 0.042 0.958 26 C 0.105 3.895 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.094 0.906 43 H 0.016 0.984 44 H 0.251 0.749 45 H 0.066 0.934 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.621 0.624 -15.723 20.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.135 4.135 3 C -0.060 4.060 4 C -0.210 4.210 5 C -0.210 4.210 6 C 0.296 3.704 7 O -0.413 6.413 8 N -0.318 5.318 9 C -0.031 4.031 10 C -0.150 4.150 11 C -0.112 4.112 12 H 0.080 0.920 13 C -0.178 4.178 14 C 0.035 3.965 15 N -0.322 5.322 16 C -0.351 4.351 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.570 5.570 20 Si 0.742 3.258 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.218 1.218 24 C 0.055 3.945 25 H 0.060 0.940 26 C -0.019 4.019 27 H 0.121 0.879 28 H 0.116 0.884 29 H 0.130 0.870 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.115 0.885 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.112 0.888 43 H 0.034 0.966 44 H 0.062 0.938 45 H 0.084 0.916 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.421 0.199 -15.045 19.511 hybrid contribution 0.263 -0.416 0.962 1.081 sum -12.158 -0.217 -14.083 18.606 Atomic orbital electron populations 1.23922 0.95844 1.02067 1.01816 1.22481 0.95613 0.96659 0.98727 1.19879 0.95723 0.95762 0.94643 1.22165 0.98907 0.96946 1.03018 1.22351 0.99496 1.03522 0.95654 1.20548 0.80252 0.81818 0.87743 1.90685 1.68356 1.39040 1.43245 1.46725 1.40980 1.27450 1.16614 1.21512 1.02300 0.90349 0.88918 1.20398 1.00029 0.95917 0.98700 1.20452 0.96205 1.00000 0.94567 0.92015 1.23004 0.94105 1.00114 1.00600 1.21822 0.94164 0.95399 0.85082 1.44992 1.03538 1.59948 1.23739 1.19127 0.95249 1.24311 0.96453 0.90372 1.24767 0.95833 1.00555 0.99223 1.69885 1.00861 1.46814 1.39438 0.86031 0.77760 0.78993 0.82972 1.20419 1.21725 1.21773 1.20520 0.90650 0.91534 0.91750 0.93997 1.21584 0.96420 1.00183 0.83719 0.87911 0.88417 0.87037 0.90813 0.91094 0.91356 0.91783 0.91636 0.90148 0.92449 0.88522 0.90778 0.92310 0.92224 0.92353 0.88765 0.96583 0.93838 0.91581 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.03 13.71 29.01 0.40 -1.63 16 2 C -0.12 -1.39 7.89 -36.02 -0.28 -1.67 16 3 C -0.06 -0.66 0.72 -156.81 -0.11 -0.78 16 4 C -0.15 -1.44 6.81 37.16 0.25 -1.18 16 5 C -0.15 -1.43 7.34 37.16 0.27 -1.15 16 6 C 0.51 8.37 6.26 -10.98 -0.07 8.30 16 7 O -0.54 -11.15 15.30 5.56 0.09 -11.07 16 8 N -0.59 -9.45 3.14 -179.24 -0.56 -10.02 16 9 C 0.09 1.11 4.05 -6.18 -0.03 1.09 16 10 C -0.11 -1.38 5.45 -29.87 -0.16 -1.54 16 11 C -0.09 -1.55 2.33 -92.50 -0.22 -1.77 16 12 H 0.06 1.04 8.10 -51.93 -0.42 0.62 16 13 C -0.14 -2.53 6.57 -24.82 -0.16 -2.70 16 14 C 0.16 3.82 5.72 -2.29 -0.01 3.81 16 15 N -0.60 -15.04 2.91 -163.13 -0.47 -15.52 16 16 C -0.22 -6.23 9.90 -15.06 -0.15 -6.38 16 17 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 18 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 19 N -0.92 -26.90 10.17 55.49 0.56 -26.33 16 20 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 C 0.16 3.36 3.57 -67.88 -0.24 3.12 16 25 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 26 C 0.11 2.13 5.35 -5.97 -0.03 2.10 16 27 H 0.10 0.91 5.66 -52.49 -0.30 0.62 16 28 H 0.10 0.87 8.06 -52.49 -0.42 0.45 16 29 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.07 0.67 5.53 -51.93 -0.29 0.38 16 31 H 0.07 0.50 8.03 -51.93 -0.42 0.08 16 32 H 0.07 0.68 6.74 -51.93 -0.35 0.33 16 33 H 0.06 0.68 7.93 -51.93 -0.41 0.26 16 34 H 0.06 0.51 7.94 -51.93 -0.41 0.10 16 35 H 0.08 0.61 4.89 -51.93 -0.25 0.36 16 36 H 0.06 0.66 7.38 -51.93 -0.38 0.28 16 37 H 0.10 0.91 2.36 -51.93 -0.12 0.79 16 38 H 0.07 0.76 8.00 -51.93 -0.42 0.35 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.09 2.55 6.16 -51.93 -0.32 2.23 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.07 1.54 7.87 -51.93 -0.41 1.13 16 46 H 0.07 1.62 7.07 -51.93 -0.37 1.25 16 LS Contribution 340.17 15.07 5.13 5.13 Total: -1.00 -32.13 340.17 -8.30 -40.43 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -7.37 Total: 0.58 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -0.64 Total: -0.71 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -0.47 Total: -51.87 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.13 -8.30 -40.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042185607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.123 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds