Wall clock time and date at job start Tue Mar 31 2020 07:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 120.00264 * 2 1 4 4 C 1.52997 * 109.46809 * 359.97438 * 3 2 1 5 5 C 1.52996 * 109.47027 * 239.99461 * 3 2 1 6 6 C 1.50703 * 109.46990 * 119.99448 * 3 2 1 7 7 O 1.21277 * 120.00267 * 352.58573 * 6 3 2 8 8 N 1.34775 * 119.99525 * 172.58650 * 6 3 2 9 9 C 1.44453 * 117.12179 * 355.18070 * 8 6 3 10 10 C 1.50917 * 113.26149 * 149.61735 * 9 8 6 11 11 C 1.48710 * 116.02740 * 32.33125 * 10 9 8 12 12 H 1.09002 * 106.55290 * 200.78233 * 11 10 9 13 13 C 1.54298 * 114.10041 * 83.38263 * 11 10 9 14 14 C 1.55321 * 100.38965 * 191.23357 * 13 11 10 15 15 N 1.47460 * 105.13965 * 36.12379 * 14 13 11 16 16 C 1.36940 * 125.62769 * 159.94399 * 15 14 13 17 17 H 1.08000 * 119.99961 * 180.02562 * 16 15 14 18 18 C 1.38807 * 120.00359 * 0.02562 * 16 15 14 19 19 N 1.31622 * 120.00026 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 120.00284 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46652 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46970 * 119.99700 * 20 18 16 23 23 H 1.48497 * 109.46772 * 240.00125 * 20 18 16 24 24 C 1.48456 * 108.74060 * 339.92203 * 15 14 13 25 25 H 1.09003 * 109.94358 * 235.82185 * 24 15 14 26 26 C 1.43929 * 117.11763 * 175.16092 * 8 6 3 27 27 H 1.08001 * 119.99958 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.00496 * 179.97438 * 1 2 3 29 29 H 1.07995 * 119.99718 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.46797 * 168.63539 * 4 3 2 31 31 H 1.08997 * 109.47178 * 288.63091 * 4 3 2 32 32 H 1.08995 * 109.47694 * 48.63614 * 4 3 2 33 33 H 1.08996 * 109.47369 * 277.36439 * 5 3 2 34 34 H 1.09000 * 109.47060 * 37.36561 * 5 3 2 35 35 H 1.09003 * 109.46977 * 157.36223 * 5 3 2 36 36 H 1.09005 * 108.72581 * 270.59134 * 9 8 6 37 37 H 1.09000 * 108.72543 * 28.64249 * 9 8 6 38 38 H 1.09001 * 108.16669 * 154.01265 * 10 9 8 39 39 H 1.08993 * 108.17304 * 270.59931 * 10 9 8 40 40 H 1.09004 * 111.23496 * 73.43637 * 13 11 10 41 41 H 1.08995 * 111.23753 * 309.03274 * 13 11 10 42 42 H 1.09005 * 110.30727 * 155.04608 * 14 13 11 43 43 H 1.09003 * 110.30775 * 277.10428 * 14 13 11 44 44 H 0.97003 * 120.00103 * 180.02562 * 19 18 16 45 45 H 1.09004 * 108.41493 * 89.64636 * 26 8 6 46 46 H 1.08997 * 108.41816 * 332.40691 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9433 1.3860 -1.2491 6 6 2.9299 1.3849 1.2306 7 8 2.8361 0.5386 2.0941 8 7 3.8088 2.3969 1.3713 9 6 3.9460 3.3093 0.2599 10 6 4.3137 4.7110 0.6814 11 6 5.1673 4.8251 1.8938 12 1 5.0331 5.8378 2.2739 13 6 6.6760 4.6522 1.6206 14 6 7.2114 4.5288 3.0733 15 7 6.1724 3.7802 3.8044 16 6 6.3553 3.1046 4.9815 17 1 5.5272 2.5843 5.4397 18 6 7.6049 3.0884 5.5856 19 7 8.6140 3.7229 5.0274 20 14 7.8542 2.1674 7.1916 21 1 6.5727 1.5432 7.6082 22 1 8.8803 1.1109 7.0022 23 1 8.3075 3.1156 8.2407 24 6 4.8954 3.8802 3.0540 25 1 4.1155 4.2841 3.6996 26 6 4.5276 2.4732 2.6159 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5401 -0.9352 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.5990 3.3989 0.2019 31 1 0.5841 2.5306 -0.9746 32 1 0.3167 2.3031 0.7703 33 1 3.8734 0.8454 -1.0742 34 1 2.4173 0.9403 -2.0934 35 1 3.1658 2.4300 -1.4698 36 1 4.7185 2.9314 -0.4099 37 1 3.0016 3.3437 -0.2833 38 1 4.8353 5.1894 -0.1475 39 1 3.3922 5.2648 0.8608 40 1 7.0896 5.5279 1.1203 41 1 6.8723 3.7451 1.0491 42 1 8.1525 3.9788 3.0843 43 1 7.3468 5.5175 3.5119 44 1 9.4874 3.7112 5.4494 45 1 5.4445 1.8916 2.5203 46 1 3.9160 2.0187 3.3953 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042185607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:10 Heat of formation + Delta-G solvation = 19.499665 kcal Electronic energy + Delta-G solvation = -25220.913789 eV Core-core repulsion = 21919.010581 eV Total energy + Delta-G solvation = -3301.903208 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.19797 -40.02099 -37.56102 -36.91404 -34.85977 -33.32477 -32.13676 -30.67514 -29.99841 -28.34828 -26.80991 -26.11904 -24.41475 -23.75580 -22.20692 -21.75715 -19.57253 -19.03701 -18.70314 -17.79173 -17.37671 -16.98560 -16.62090 -16.39636 -16.00046 -15.62608 -15.35575 -15.02596 -14.92802 -14.23307 -14.11125 -13.80328 -13.53226 -13.34455 -13.27851 -13.22136 -13.11634 -12.98421 -12.81933 -12.64330 -12.28217 -12.19415 -12.01460 -11.97566 -11.69088 -11.60367 -11.36329 -11.16439 -11.07869 -10.79896 -10.64091 -10.27081 -9.52348 -8.95999 -7.83823 -5.25489 1.32749 1.40429 1.41580 1.51814 1.59790 2.14999 2.44872 3.27358 3.42615 3.55082 3.70408 3.76310 3.83012 3.95882 4.03535 4.10078 4.22537 4.23093 4.36140 4.45230 4.46460 4.63465 4.66580 4.72998 4.83452 4.84958 4.89371 4.91366 4.96026 5.03250 5.07181 5.10040 5.17540 5.29965 5.32283 5.37974 5.45566 5.52420 5.66758 5.70909 5.73140 5.80887 5.84259 6.24132 6.44347 7.07137 7.19061 7.72219 8.35503 9.19570 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.020886 B = 0.004786 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.284581 B = 5849.033368 C = 6803.396487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.148 4.148 3 C -0.047 4.047 4 C -0.153 4.153 5 C -0.151 4.151 6 C 0.500 3.500 7 O -0.594 6.594 8 N -0.585 5.585 9 C 0.081 3.919 10 C -0.112 4.112 11 C -0.080 4.080 12 H 0.066 0.934 13 C -0.122 4.122 14 C 0.159 3.841 15 N -0.618 5.618 16 C -0.236 4.236 17 H 0.069 0.931 18 C -0.060 4.060 19 N -0.944 5.944 20 Si 0.972 3.028 21 H -0.274 1.274 22 H -0.290 1.290 23 H -0.286 1.286 24 C 0.159 3.841 25 H 0.032 0.968 26 C 0.131 3.869 27 H 0.122 0.878 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.070 0.930 37 H 0.134 0.866 38 H 0.112 0.888 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.058 0.942 42 H 0.056 0.944 43 H -0.009 1.009 44 H 0.247 0.753 45 H 0.025 0.975 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.793 2.094 -18.901 24.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.166 4.166 3 C -0.050 4.050 4 C -0.210 4.210 5 C -0.208 4.208 6 C 0.290 3.710 7 O -0.474 6.474 8 N -0.316 5.316 9 C -0.039 4.039 10 C -0.150 4.150 11 C -0.100 4.100 12 H 0.084 0.916 13 C -0.160 4.160 14 C 0.035 3.965 15 N -0.343 5.343 16 C -0.365 4.365 17 H 0.087 0.913 18 C -0.253 4.253 19 N -0.594 5.594 20 Si 0.800 3.200 21 H -0.199 1.199 22 H -0.217 1.217 23 H -0.213 1.213 24 C 0.053 3.947 25 H 0.050 0.950 26 C 0.005 3.995 27 H 0.140 0.860 28 H 0.125 0.875 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.124 0.876 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.123 0.877 36 H 0.089 0.911 37 H 0.151 0.849 38 H 0.130 0.870 39 H 0.102 0.898 40 H 0.113 0.887 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.009 0.991 44 H 0.057 0.943 45 H 0.044 0.956 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -14.619 1.694 -18.276 23.464 hybrid contribution 0.890 -0.930 1.984 2.365 sum -13.729 0.763 -16.292 21.319 Atomic orbital electron populations 1.24174 0.95216 1.03462 0.98970 1.22500 0.96420 0.96357 1.01372 1.19909 0.95609 0.96829 0.92695 1.22229 0.98185 0.95731 1.04808 1.22389 0.98387 1.05060 0.94925 1.21644 0.80064 0.80576 0.88752 1.90652 1.69978 1.41098 1.45684 1.46777 1.40257 1.28531 1.16051 1.21990 1.04836 0.89509 0.87595 1.20464 1.00669 0.96459 0.97360 1.20451 0.95852 0.98638 0.95026 0.91562 1.22856 0.95015 1.01664 0.96441 1.21636 0.92962 0.93093 0.88824 1.45254 1.05834 1.59649 1.23592 1.19332 0.95137 1.24331 0.97725 0.91319 1.25515 0.95696 1.01795 1.02322 1.70113 1.00880 1.47933 1.40466 0.85106 0.77555 0.77774 0.79520 1.19915 1.21705 1.21307 1.20708 0.88496 0.92530 0.93015 0.94972 1.20898 0.94332 0.98957 0.85306 0.86039 0.87486 0.88858 0.89984 0.87586 0.92196 0.93646 0.89470 0.87675 0.91138 0.84854 0.86964 0.89783 0.88749 0.92346 0.92594 0.99061 0.94311 0.95648 0.94430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.24 13.71 67.78 0.93 -2.31 16 2 C -0.15 -3.34 7.89 25.65 0.20 -3.13 16 3 C -0.05 -0.99 0.72 -53.67 -0.04 -1.03 16 4 C -0.15 -2.19 6.81 71.98 0.49 -1.70 16 5 C -0.15 -2.26 7.34 71.98 0.53 -1.73 16 6 C 0.50 16.38 6.26 87.66 0.55 16.93 16 7 O -0.59 -25.94 15.30 -3.02 -0.05 -25.99 16 8 N -0.59 -18.49 3.14 -839.39 -2.63 -21.12 16 9 C 0.08 1.64 4.05 86.08 0.35 1.99 16 10 C -0.11 -2.18 5.45 28.56 0.16 -2.02 16 11 C -0.08 -2.50 2.33 -12.01 -0.03 -2.53 16 12 H 0.07 2.03 8.10 -2.39 -0.02 2.02 16 13 C -0.12 -4.21 6.57 31.83 0.21 -4.00 16 14 C 0.16 7.88 5.72 86.99 0.50 8.37 16 15 N -0.62 -32.57 2.91 -670.03 -1.95 -34.52 16 16 C -0.24 -13.88 9.90 84.03 0.83 -13.05 16 17 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 18 C -0.06 -3.55 5.49 84.86 0.47 -3.09 16 19 N -0.94 -57.54 10.17 21.65 0.22 -57.32 16 20 Si 0.97 48.06 29.55 68.60 2.03 50.09 16 21 H -0.27 -13.19 7.11 99.48 0.71 -12.49 16 22 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 23 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 24 C 0.16 6.69 3.57 43.95 0.16 6.85 16 25 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 26 C 0.13 5.56 5.35 86.49 0.46 6.02 16 27 H 0.12 1.70 5.66 -2.91 -0.02 1.68 16 28 H 0.11 1.68 8.06 -2.91 -0.02 1.65 16 29 H 0.09 2.38 8.06 -2.91 -0.02 2.36 16 30 H 0.08 1.05 5.53 -2.39 -0.01 1.04 16 31 H 0.11 0.84 8.03 -2.39 -0.02 0.82 16 32 H 0.06 0.99 6.74 -2.39 -0.02 0.97 16 33 H 0.04 0.86 7.93 -2.39 -0.02 0.84 16 34 H 0.09 0.98 7.94 -2.39 -0.02 0.96 16 35 H 0.10 1.01 4.89 -2.39 -0.01 1.00 16 36 H 0.07 1.30 7.38 -2.38 -0.02 1.29 16 37 H 0.13 1.76 2.36 -2.39 -0.01 1.75 16 38 H 0.11 1.51 8.00 -2.39 -0.02 1.49 16 39 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.09 2.66 8.14 -2.38 -0.02 2.64 16 41 H 0.06 2.03 8.14 -2.39 -0.02 2.02 16 42 H 0.06 3.18 6.16 -2.38 -0.01 3.17 16 43 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 44 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 45 H 0.03 1.26 7.87 -2.38 -0.02 1.24 16 46 H 0.04 1.81 7.07 -2.39 -0.02 1.79 16 Total: -1.00 -78.06 340.17 4.34 -73.72 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 0.96 Total: 9.57 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 5.76 Total: 5.56 kcal Atomic # 7 Polarization: -108.59 SS G_CDS: -4.36 Total: -112.96 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.05 Total: -25.99 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.03 Total: 50.09 kcal Total: -78.06 4.34 -73.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042185607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.223 kcal (2) G-P(sol) polarization free energy of solvation -78.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds