Wall clock time and date at job start Tue Mar 31 2020 07:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50705 * 120.00170 * 2 1 4 4 C 1.53004 * 109.46846 * 359.97438 * 3 2 1 5 5 C 1.52992 * 109.47085 * 239.99776 * 3 2 1 6 6 C 1.50700 * 109.46968 * 119.99924 * 3 2 1 7 7 O 1.21273 * 120.00465 * 359.92725 * 6 3 2 8 8 N 1.34784 * 119.99500 * 179.97438 * 6 3 2 9 9 C 1.46591 * 119.75095 * 175.27251 * 8 6 3 10 10 C 1.53885 * 110.70926 * 227.76127 * 9 8 6 11 11 C 1.51971 * 107.28990 * 308.18898 * 10 9 8 12 12 H 1.08998 * 111.56350 * 303.15294 * 11 10 9 13 13 C 1.53696 * 115.00641 * 175.44866 * 11 10 9 14 14 C 1.55249 * 101.71711 * 206.31073 * 13 11 10 15 15 N 1.48153 * 107.07106 * 22.82154 * 14 13 11 16 16 C 1.36939 * 126.40244 * 184.86684 * 15 14 13 17 17 H 1.07992 * 120.00560 * 169.38347 * 16 15 14 18 18 C 1.38819 * 119.99492 * 349.38103 * 16 15 14 19 19 N 1.31619 * 119.99531 * 163.17163 * 18 16 15 20 20 Si 1.86799 * 120.00010 * 343.17941 * 18 16 15 21 21 H 1.48497 * 109.46870 * 179.97438 * 20 18 16 22 22 H 1.48507 * 109.46790 * 299.99483 * 20 18 16 23 23 H 1.48494 * 109.47291 * 59.99672 * 20 18 16 24 24 C 1.45507 * 107.20219 * 4.60280 * 15 14 13 25 25 H 1.09002 * 109.56865 * 86.89120 * 24 15 14 26 26 C 1.47788 * 119.75323 * 355.28615 * 8 6 3 27 27 H 1.07997 * 120.00153 * 0.02562 * 1 2 3 28 28 H 1.08009 * 120.00206 * 180.02562 * 1 2 3 29 29 H 1.08011 * 120.00130 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.46759 * 167.54971 * 4 3 2 31 31 H 1.08999 * 109.46565 * 287.55084 * 4 3 2 32 32 H 1.09001 * 109.47093 * 47.54991 * 4 3 2 33 33 H 1.09004 * 109.47570 * 319.50145 * 5 3 2 34 34 H 1.09002 * 109.47158 * 79.50207 * 5 3 2 35 35 H 1.09004 * 109.47526 * 199.49773 * 5 3 2 36 36 H 1.09001 * 109.23394 * 107.44328 * 9 8 6 37 37 H 1.09005 * 109.19906 * 348.05928 * 9 8 6 38 38 H 1.09006 * 109.89516 * 188.74036 * 10 9 8 39 39 H 1.09000 * 109.95413 * 67.67200 * 10 9 8 40 40 H 1.09004 * 110.96285 * 324.66114 * 13 11 10 41 41 H 1.08996 * 110.96111 * 88.36684 * 13 11 10 42 42 H 1.09004 * 110.02325 * 263.39944 * 14 13 11 43 43 H 1.08993 * 109.79028 * 142.11753 * 14 13 11 44 44 H 0.96995 * 120.00047 * 354.89104 * 19 18 16 45 45 H 1.08999 * 110.06891 * 9.50966 * 26 8 6 46 46 H 1.09002 * 110.07077 * 247.94096 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4680 -0.0006 5 6 2.9431 1.3861 -1.2491 6 6 2.9298 1.3849 1.2305 7 8 2.9340 0.4726 2.0295 8 7 3.6995 2.4707 1.4434 9 6 4.4601 2.5899 2.6909 10 6 4.2661 3.9829 3.3155 11 6 4.5678 5.0083 2.2352 12 1 5.5701 4.8775 1.8274 13 6 4.3215 6.4703 2.6402 14 6 4.0363 7.1343 1.2662 15 7 3.5848 6.0613 0.3499 16 6 3.3175 6.1930 -0.9866 17 1 3.1604 5.3148 -1.5951 18 6 3.2484 7.4557 -1.5594 19 7 3.3242 7.5903 -2.8665 20 14 3.0481 8.9634 -0.4750 21 1 3.0018 10.1810 -1.3239 22 1 1.7862 8.8516 0.3000 23 1 4.1972 9.0564 0.4608 24 6 3.4845 4.8397 1.1341 25 1 2.4994 4.7831 1.5973 26 6 3.7700 3.5323 0.4177 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5401 -0.9354 0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.5958 3.3963 0.2209 31 1 0.5980 2.5425 -0.9807 32 1 0.3056 2.2936 0.7574 33 1 3.3970 0.4132 -1.4377 34 1 2.3329 1.6744 -2.1051 35 1 3.7261 2.1285 -1.0947 36 1 5.5185 2.4342 2.4824 37 1 4.1173 1.8304 3.3937 38 1 4.9524 4.1129 4.1524 39 1 3.2377 4.0969 3.6584 40 1 3.4602 6.5515 3.3035 41 1 5.2092 6.9017 3.1027 42 1 4.9448 7.5956 0.8788 43 1 3.2529 7.8844 1.3743 44 1 3.5024 6.8170 -3.4242 45 1 3.0202 3.3573 -0.3538 46 1 4.7654 3.5586 -0.0257 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042185608.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:17 Heat of formation + Delta-G solvation = 43.162152 kcal Electronic energy + Delta-G solvation = -25602.993457 eV Core-core repulsion = 22302.116332 eV Total energy + Delta-G solvation = -3300.877126 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.87160 -38.76745 -36.43086 -35.50769 -33.31194 -31.90940 -30.55153 -29.73879 -28.78725 -27.37158 -25.17336 -24.12152 -23.29751 -22.28635 -20.88443 -20.02103 -19.53962 -18.17812 -17.38363 -16.45032 -16.33072 -15.31766 -15.17853 -15.02399 -14.83822 -14.17549 -14.11409 -13.66379 -13.47944 -13.27998 -13.08368 -12.75365 -12.36786 -12.31883 -12.14244 -12.07865 -11.78319 -11.54084 -11.38996 -11.16854 -11.07344 -10.93811 -10.71899 -10.55441 -10.50742 -10.10621 -9.94454 -9.53069 -9.39872 -9.20931 -8.94647 -8.70708 -8.48878 -7.13177 -6.36505 -3.28761 2.26340 2.75684 3.15740 3.38842 3.48562 3.68269 4.46739 4.59332 4.64710 4.69579 4.90470 4.97459 5.02918 5.09528 5.14998 5.36780 5.38974 5.43967 5.46600 5.49952 5.63543 5.67000 5.71014 5.76230 5.78176 5.81949 5.84001 5.94150 5.97751 6.01245 6.02149 6.18355 6.18800 6.23728 6.31589 6.39354 6.48740 6.59128 6.64289 6.76818 6.78268 6.82335 7.47942 7.59885 8.25097 8.29771 8.94856 9.51584 10.17124 11.13650 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.017203 B = 0.006060 C = 0.004888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.236559 B = 4619.430346 C = 5726.993674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 C -0.054 4.054 4 C -0.163 4.163 5 C -0.156 4.156 6 C 0.530 3.470 7 O -0.549 6.549 8 N -0.605 5.605 9 C 0.113 3.887 10 C -0.118 4.118 11 C -0.113 4.113 12 H 0.081 0.919 13 C -0.124 4.124 14 C 0.116 3.884 15 N -0.601 5.601 16 C -0.325 4.325 17 H 0.080 0.920 18 C -0.015 4.015 19 N -0.925 5.925 20 Si 1.053 2.947 21 H -0.302 1.302 22 H -0.298 1.298 23 H -0.276 1.276 24 C 0.153 3.847 25 H 0.030 0.970 26 C 0.090 3.910 27 H 0.105 0.895 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.051 0.949 43 H 0.029 0.971 44 H 0.262 0.738 45 H 0.112 0.888 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.074 -9.903 8.926 13.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.136 4.136 3 C -0.057 4.057 4 C -0.219 4.219 5 C -0.213 4.213 6 C 0.318 3.682 7 O -0.427 6.427 8 N -0.338 5.338 9 C -0.010 4.010 10 C -0.157 4.157 11 C -0.132 4.132 12 H 0.099 0.901 13 C -0.162 4.162 14 C -0.009 4.009 15 N -0.327 5.327 16 C -0.452 4.452 17 H 0.098 0.902 18 C -0.216 4.216 19 N -0.565 5.565 20 Si 0.886 3.114 21 H -0.230 1.230 22 H -0.226 1.226 23 H -0.203 1.203 24 C 0.044 3.956 25 H 0.047 0.953 26 C -0.033 4.033 27 H 0.123 0.877 28 H 0.115 0.885 29 H 0.129 0.871 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.047 0.953 44 H 0.072 0.928 45 H 0.130 0.870 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.139 -8.720 9.187 12.667 hybrid contribution 0.164 -1.603 0.012 1.611 sum 0.025 -10.323 9.199 13.827 Atomic orbital electron populations 1.23980 0.95949 1.02160 1.01439 1.22511 0.95605 0.96448 0.99082 1.19833 0.95743 0.95898 0.94273 1.22380 0.98856 0.97536 1.03161 1.22265 1.00136 1.03135 0.95772 1.20469 0.79197 0.81482 0.87082 1.90629 1.66772 1.37649 1.47613 1.48197 1.46072 1.20446 1.19054 1.21537 0.95511 0.97904 0.86009 1.21790 1.02252 0.93812 0.97810 1.22299 1.00138 0.94191 0.96621 0.90077 1.22463 1.01032 0.95319 0.97337 1.22434 0.97515 0.91759 0.89155 1.44508 1.78979 1.03119 1.06144 1.20093 1.48639 0.95207 0.81234 0.90209 1.25768 0.98703 0.99228 0.97859 1.70909 1.49417 1.32581 1.03620 0.84195 0.76792 0.76343 0.74046 1.22993 1.22602 1.20338 1.21016 0.95733 0.87533 0.91336 0.95271 1.22420 1.03303 0.86743 0.90785 0.87704 0.88452 0.87116 0.89626 0.90954 0.91776 0.92063 0.90936 0.90199 0.92027 0.89465 0.90723 0.91367 0.91571 0.91388 0.93094 0.95325 0.92824 0.87022 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.34 13.70 29.02 0.40 -1.95 16 2 C -0.12 -1.57 7.90 -36.02 -0.28 -1.85 16 3 C -0.05 -0.77 0.72 -156.81 -0.11 -0.88 16 4 C -0.16 -2.29 6.82 37.16 0.25 -2.04 16 5 C -0.16 -2.04 8.05 37.15 0.30 -1.74 16 6 C 0.53 8.53 6.46 -10.98 -0.07 8.46 16 7 O -0.55 -10.16 15.40 5.56 0.09 -10.07 16 8 N -0.60 -9.22 3.00 -172.74 -0.52 -9.74 16 9 C 0.11 1.53 6.31 -3.53 -0.02 1.51 16 10 C -0.12 -1.50 5.72 -26.79 -0.15 -1.65 16 11 C -0.11 -1.72 2.61 -89.52 -0.23 -1.96 16 12 H 0.08 1.27 8.13 -51.93 -0.42 0.85 16 13 C -0.12 -1.93 6.54 -25.18 -0.16 -2.10 16 14 C 0.12 2.36 4.54 -1.94 -0.01 2.35 16 15 N -0.60 -13.43 3.26 -162.93 -0.53 -13.96 16 16 C -0.33 -8.49 10.17 -15.06 -0.15 -8.64 16 17 H 0.08 2.15 7.59 -52.49 -0.40 1.75 16 18 C -0.02 -0.43 5.49 -17.43 -0.10 -0.53 16 19 N -0.92 -27.74 13.70 55.49 0.76 -26.98 16 20 Si 1.05 25.43 24.77 -169.99 -4.21 21.22 16 21 H -0.30 -7.58 7.11 56.52 0.40 -7.17 16 22 H -0.30 -7.07 7.10 56.52 0.40 -6.67 16 23 H -0.28 -6.00 4.89 56.52 0.28 -5.73 16 24 C 0.15 2.78 2.40 -67.82 -0.16 2.62 16 25 H 0.03 0.57 7.42 -51.93 -0.39 0.19 16 26 C 0.09 1.48 2.91 -3.95 -0.01 1.47 16 27 H 0.10 1.20 5.66 -52.49 -0.30 0.90 16 28 H 0.10 0.98 8.06 -52.48 -0.42 0.56 16 29 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 30 H 0.09 1.37 4.24 -51.93 -0.22 1.15 16 31 H 0.07 0.95 7.82 -51.93 -0.41 0.54 16 32 H 0.06 0.86 6.66 -51.93 -0.35 0.52 16 33 H 0.06 0.73 7.98 -51.93 -0.41 0.32 16 34 H 0.07 0.90 7.80 -51.93 -0.40 0.49 16 35 H 0.08 1.12 4.71 -51.93 -0.24 0.87 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.09 1.22 6.99 -51.93 -0.36 0.86 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.90 7.98 -51.93 -0.41 0.49 16 40 H 0.07 0.97 8.12 -51.93 -0.42 0.54 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.05 1.09 6.66 -51.93 -0.35 0.75 16 43 H 0.03 0.62 4.47 -51.93 -0.23 0.39 16 44 H 0.26 7.74 8.73 -40.82 -0.36 7.38 16 45 H 0.11 1.87 2.79 -51.93 -0.14 1.72 16 46 H 0.07 1.24 8.02 -51.93 -0.42 0.82 16 LS Contribution 331.89 15.07 5.00 5.00 Total: -1.00 -30.51 331.89 -7.20 -37.72 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -7.27 Total: 3.74 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -0.52 Total: -6.93 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: -0.29 Total: -50.68 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -4.21 Total: 21.22 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.51 -7.20 -37.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042185608.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.880 kcal (2) G-P(sol) polarization free energy of solvation -30.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds