Wall clock time and date at job start Tue Mar 31 2020 06:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46948 * 2 1 4 4 C 1.50704 * 115.55099 * 305.85004 * 3 2 1 5 5 O 1.21274 * 120.00289 * 102.45166 * 4 3 2 6 6 N 1.34775 * 119.99708 * 282.45045 * 4 3 2 7 7 C 1.44794 * 120.18584 * 354.92880 * 6 4 3 8 8 C 1.51509 * 112.21868 * 264.58152 * 7 6 4 9 9 C 1.51316 * 113.25050 * 285.35917 * 8 7 6 10 10 H 1.09003 * 111.31364 * 185.23992 * 9 8 7 11 11 C 1.54721 * 106.47951 * 307.66676 * 9 8 7 12 12 C 1.54615 * 104.28636 * 88.99351 * 11 9 8 13 13 C 1.50869 * 105.21733 * 11.53701 * 12 11 9 14 14 H 1.09001 * 105.90163 * 122.36876 * 13 12 11 15 15 C 1.49813 * 120.17697 * 174.94723 * 6 4 3 16 16 N 1.48060 * 109.90590 * 8.03458 * 13 12 11 17 17 C 1.36938 * 127.83711 * 155.16186 * 16 13 12 18 18 H 1.07999 * 119.99922 * 26.21106 * 17 16 13 19 19 C 1.38816 * 120.00030 * 206.21119 * 17 16 13 20 20 N 1.31616 * 119.99739 * 26.74829 * 19 17 16 21 21 Si 1.86790 * 119.99959 * 206.75372 * 19 17 16 22 22 H 1.48500 * 109.47092 * 179.97438 * 21 19 17 23 23 H 1.48503 * 109.47263 * 299.99658 * 21 19 17 24 24 H 1.48501 * 109.47555 * 60.00027 * 21 19 17 25 25 C 1.52998 * 117.51790 * 91.55065 * 3 2 1 26 26 C 1.53001 * 117.49710 * 160.18214 * 3 2 1 27 27 H 1.08999 * 109.47345 * 65.47632 * 1 2 3 28 28 H 1.08997 * 109.46887 * 185.47614 * 1 2 3 29 29 H 1.09000 * 109.47256 * 305.47857 * 1 2 3 30 30 H 1.09004 * 109.47245 * 240.00073 * 2 1 3 31 31 H 1.08995 * 109.47122 * 119.99919 * 2 1 3 32 32 H 1.08997 * 108.93261 * 143.86894 * 7 6 4 33 33 H 1.09007 * 108.85229 * 25.23313 * 7 6 4 34 34 H 1.09004 * 108.72620 * 164.39085 * 8 7 6 35 35 H 1.09000 * 108.73186 * 46.33712 * 8 7 6 36 36 H 1.08996 * 110.44916 * 207.83487 * 11 9 8 37 37 H 1.08998 * 110.45335 * 330.38881 * 11 9 8 38 38 H 1.09001 * 110.17171 * 252.67746 * 12 11 9 39 39 H 1.09000 * 110.53478 * 130.58211 * 12 11 9 40 40 H 1.09003 * 109.55198 * 270.53227 * 15 6 4 41 41 H 1.08995 * 109.55147 * 30.81325 * 15 6 4 42 42 H 0.97004 * 120.00252 * 5.20536 * 20 19 17 43 43 H 1.09002 * 117.50047 * 214.96567 * 25 3 2 44 44 H 1.08993 * 117.50030 * 359.97438 * 25 3 2 45 45 H 1.08996 * 117.50030 * 359.96826 * 26 3 2 46 46 H 1.09002 * 117.49934 * 145.00210 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5058 2.3208 -1.1021 5 8 0.6292 3.1248 -0.8658 6 7 2.0024 2.2127 -2.3503 7 6 3.1225 1.3340 -2.6147 8 6 4.4468 2.0694 -2.5862 9 6 4.6809 2.9260 -3.8114 10 1 5.6778 3.3668 -3.8020 11 6 4.4626 2.0075 -5.0372 12 6 2.9518 2.1308 -5.3421 13 6 2.4718 3.2894 -4.5034 14 1 2.0367 4.0039 -5.2021 15 6 1.3988 3.0013 -3.4719 16 7 3.6275 3.9727 -3.8791 17 6 3.7061 5.2723 -3.4550 18 1 2.8107 5.7993 -3.1602 19 6 4.9368 5.9125 -3.4039 20 7 5.9098 5.5329 -4.2048 21 14 5.2119 7.3126 -2.1984 22 1 6.5992 7.8229 -2.3406 23 1 4.2497 8.4073 -2.4831 24 1 5.0059 6.8203 -0.8125 25 6 2.3102 2.0967 1.3564 26 6 3.4792 1.6830 0.4601 27 1 -0.3634 0.4265 -0.9349 28 1 -0.3633 -1.0230 0.0981 29 1 -0.3634 0.5964 0.8368 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.9914 0.8795 -3.5966 33 1 3.1386 0.5471 -1.8604 34 1 5.2517 1.3381 -2.5115 35 1 4.4740 2.7074 -1.7028 36 1 5.0543 2.3554 -5.8839 37 1 4.7175 0.9767 -4.7911 38 1 2.4343 1.2158 -5.0541 39 1 2.7910 2.3381 -6.4001 40 1 0.5948 2.4260 -3.9310 41 1 1.0024 3.9403 -3.0855 42 1 5.7452 4.8581 -4.8819 43 1 2.1017 3.1624 1.4517 44 1 2.1243 1.4997 2.2491 45 1 4.0625 0.8136 0.7633 46 1 4.0397 2.4765 -0.0342 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045842520.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:57 Heat of formation + Delta-G solvation = 23.726821 kcal Electronic energy + Delta-G solvation = -26133.145285 eV Core-core repulsion = 22831.425381 eV Total energy + Delta-G solvation = -3301.719905 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 4.20 seconds Orbital eigenvalues (eV) -40.48576 -38.74833 -36.54332 -34.43561 -32.72732 -32.31870 -31.95433 -29.36642 -27.44488 -26.12784 -24.48292 -23.69234 -22.96863 -22.36035 -21.24241 -19.60729 -19.27277 -17.79663 -17.45286 -16.32517 -16.10087 -15.34637 -14.93838 -14.58272 -14.43996 -13.91224 -13.76818 -13.53610 -13.22694 -13.11659 -12.79319 -12.36260 -12.26546 -12.03167 -11.78886 -11.73770 -11.43444 -11.40933 -11.32853 -11.13010 -10.98456 -10.70429 -10.39013 -10.27632 -10.13546 -10.04535 -10.02010 -9.82744 -9.56923 -9.44620 -9.07792 -8.47608 -8.03272 -6.88696 -6.10680 -3.23524 3.07041 3.38630 3.49823 3.53454 3.70728 3.85097 4.53164 4.61630 4.82360 4.92433 4.99021 5.09470 5.23113 5.25763 5.32864 5.38849 5.45994 5.53838 5.55468 5.59630 5.69088 5.74479 5.80185 5.88834 5.92225 5.99912 6.04232 6.08127 6.09586 6.15789 6.17021 6.23327 6.28811 6.31181 6.39393 6.51898 6.62610 6.67248 6.82623 7.03185 7.13412 7.18789 7.83664 8.00184 8.48007 8.69209 8.97389 9.76440 10.43194 11.19038 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.015989 B = 0.006960 C = 0.005862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.749685 B = 4022.306326 C = 4775.699701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.076 4.076 3 C -0.152 4.152 4 C 0.552 3.448 5 O -0.549 6.549 6 N -0.582 5.582 7 C 0.109 3.891 8 C -0.149 4.149 9 C 0.143 3.857 10 H 0.091 0.909 11 C -0.131 4.131 12 C -0.117 4.117 13 C 0.127 3.873 14 H 0.041 0.959 15 C 0.119 3.881 16 N -0.573 5.573 17 C -0.316 4.316 18 H 0.057 0.943 19 C -0.023 4.023 20 N -0.910 5.910 21 Si 1.062 2.938 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.294 1.294 25 C -0.148 4.148 26 C -0.165 4.165 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.080 0.920 42 H 0.269 0.731 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.099 0.901 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.879 -13.861 4.526 15.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.156 4.156 4 C 0.339 3.661 5 O -0.427 6.427 6 N -0.314 5.314 7 C -0.014 4.014 8 C -0.190 4.190 9 C 0.036 3.964 10 H 0.109 0.891 11 C -0.170 4.170 12 C -0.155 4.155 13 C 0.019 3.981 14 H 0.059 0.941 15 C -0.004 4.004 16 N -0.296 5.296 17 C -0.444 4.444 18 H 0.075 0.925 19 C -0.225 4.225 20 N -0.550 5.550 21 Si 0.892 3.108 22 H -0.211 1.211 23 H -0.219 1.219 24 H -0.222 1.222 25 C -0.186 4.186 26 C -0.202 4.202 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.117 0.883 44 H 0.116 0.884 45 H 0.118 0.882 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.208 -12.181 5.238 13.911 hybrid contribution -1.167 -1.007 -0.609 1.657 sum -5.375 -13.187 4.629 14.974 Atomic orbital electron populations 1.21707 0.95157 1.01110 1.02603 1.21019 0.96337 0.91784 1.02230 1.21427 1.00734 0.96920 0.96475 1.19399 0.81908 0.82406 0.82396 1.90634 1.32502 1.37384 1.82207 1.48076 1.31961 1.43752 1.07609 1.21117 0.86535 0.91946 1.01838 1.22060 0.95547 0.99103 1.02269 1.21276 0.96497 0.88008 0.90624 0.89137 1.22753 0.95371 0.99161 0.99718 1.21846 0.96932 0.97700 0.99025 1.20458 0.91014 0.94336 0.92289 0.94074 1.22406 0.95292 0.95596 0.87107 1.44908 1.08851 1.06239 1.69597 1.19559 0.96365 0.86888 1.41623 0.92485 1.25736 0.93722 1.01989 1.01049 1.70785 1.35937 1.31237 1.17090 0.83555 0.75857 0.75491 0.75925 1.21059 1.21941 1.22153 1.22973 1.01522 1.01765 0.92297 1.23289 0.90032 1.03963 1.02950 0.92765 0.92749 0.92268 0.91299 0.91193 0.90454 0.91443 0.92760 0.91767 0.92183 0.92032 0.91892 0.91958 0.93070 0.90155 0.92017 0.88268 0.88383 0.88249 0.87490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.55 37.16 0.35 -1.39 16 2 C -0.08 -0.88 5.70 -26.73 -0.15 -1.03 16 3 C -0.15 -2.23 0.87 -155.66 -0.14 -2.36 16 4 C 0.55 10.39 5.90 -10.98 -0.06 10.33 16 5 O -0.55 -12.37 16.60 5.56 0.09 -12.28 16 6 N -0.58 -10.57 2.87 -174.00 -0.50 -11.07 16 7 C 0.11 1.70 4.65 -5.71 -0.03 1.68 16 8 C -0.15 -2.68 4.63 -28.34 -0.13 -2.81 16 9 C 0.14 3.01 3.11 -66.68 -0.21 2.80 16 10 H 0.09 2.23 5.81 -51.93 -0.30 1.93 16 11 C -0.13 -2.24 6.04 -24.98 -0.15 -2.39 16 12 C -0.12 -1.90 5.80 -26.95 -0.16 -2.06 16 13 C 0.13 2.53 2.59 -68.85 -0.18 2.36 16 14 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 15 C 0.12 2.29 6.05 -2.90 -0.02 2.27 16 16 N -0.57 -13.70 2.45 -157.27 -0.39 -14.09 16 17 C -0.32 -8.79 10.11 -15.06 -0.15 -8.94 16 18 H 0.06 1.66 7.96 -52.49 -0.42 1.25 16 19 C -0.02 -0.64 5.17 -17.43 -0.09 -0.73 16 20 N -0.91 -26.63 12.48 55.49 0.69 -25.93 16 21 Si 1.06 25.75 29.99 -169.99 -5.10 20.65 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 C -0.15 -2.06 9.82 -26.73 -0.26 -2.32 16 26 C -0.17 -2.27 8.47 -26.73 -0.23 -2.50 16 27 H 0.05 0.74 7.63 -51.93 -0.40 0.34 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.75 6.73 -51.93 -0.35 0.40 16 31 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 32 H 0.08 1.13 3.92 -51.93 -0.20 0.92 16 33 H 0.07 0.91 4.64 -51.93 -0.24 0.67 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.06 1.32 5.72 -51.93 -0.30 1.02 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.88 7.38 -51.93 -0.38 0.50 16 38 H 0.06 0.88 6.13 -51.93 -0.32 0.57 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.08 1.79 7.47 -51.93 -0.39 1.40 16 42 H 0.27 7.84 6.74 -40.82 -0.28 7.56 16 43 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 44 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 46 H 0.11 1.76 5.78 -51.93 -0.30 1.46 16 LS Contribution 339.51 15.07 5.12 5.12 Total: -1.00 -31.70 339.51 -8.99 -40.69 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -7.31 Total: 4.01 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -1.60 Total: -7.10 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -0.19 Total: -51.09 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.09 Total: -12.28 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -5.10 Total: 20.65 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.70 -8.99 -40.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045842520.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.415 kcal (2) G-P(sol) polarization free energy of solvation -31.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.20 seconds