Wall clock time and date at job start Tue Mar 31 2020 06:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46948 * 2 1 4 4 C 1.50704 * 115.55099 * 305.85004 * 3 2 1 5 5 O 1.21274 * 120.00289 * 102.45166 * 4 3 2 6 6 N 1.34775 * 119.99708 * 282.45045 * 4 3 2 7 7 C 1.44794 * 120.18584 * 354.92880 * 6 4 3 8 8 C 1.51509 * 112.21868 * 264.58152 * 7 6 4 9 9 C 1.51316 * 113.25050 * 285.35917 * 8 7 6 10 10 H 1.09003 * 111.31364 * 185.23992 * 9 8 7 11 11 C 1.54721 * 106.47951 * 307.66676 * 9 8 7 12 12 C 1.54615 * 104.28636 * 88.99351 * 11 9 8 13 13 C 1.50869 * 105.21733 * 11.53701 * 12 11 9 14 14 H 1.09001 * 105.90163 * 122.36876 * 13 12 11 15 15 C 1.49813 * 120.17697 * 174.94723 * 6 4 3 16 16 N 1.48060 * 109.90590 * 8.03458 * 13 12 11 17 17 C 1.36938 * 127.83711 * 155.16186 * 16 13 12 18 18 H 1.07999 * 119.99922 * 26.21106 * 17 16 13 19 19 C 1.38816 * 120.00030 * 206.21119 * 17 16 13 20 20 N 1.31616 * 119.99739 * 26.74829 * 19 17 16 21 21 Si 1.86790 * 119.99959 * 206.75372 * 19 17 16 22 22 H 1.48500 * 109.47092 * 179.97438 * 21 19 17 23 23 H 1.48503 * 109.47263 * 299.99658 * 21 19 17 24 24 H 1.48501 * 109.47555 * 60.00027 * 21 19 17 25 25 C 1.52998 * 117.51790 * 91.55065 * 3 2 1 26 26 C 1.53001 * 117.49710 * 160.18214 * 3 2 1 27 27 H 1.08999 * 109.47345 * 65.47632 * 1 2 3 28 28 H 1.08997 * 109.46887 * 185.47614 * 1 2 3 29 29 H 1.09000 * 109.47256 * 305.47857 * 1 2 3 30 30 H 1.09004 * 109.47245 * 240.00073 * 2 1 3 31 31 H 1.08995 * 109.47122 * 119.99919 * 2 1 3 32 32 H 1.08997 * 108.93261 * 143.86894 * 7 6 4 33 33 H 1.09007 * 108.85229 * 25.23313 * 7 6 4 34 34 H 1.09004 * 108.72620 * 164.39085 * 8 7 6 35 35 H 1.09000 * 108.73186 * 46.33712 * 8 7 6 36 36 H 1.08996 * 110.44916 * 207.83487 * 11 9 8 37 37 H 1.08998 * 110.45335 * 330.38881 * 11 9 8 38 38 H 1.09001 * 110.17171 * 252.67746 * 12 11 9 39 39 H 1.09000 * 110.53478 * 130.58211 * 12 11 9 40 40 H 1.09003 * 109.55198 * 270.53227 * 15 6 4 41 41 H 1.08995 * 109.55147 * 30.81325 * 15 6 4 42 42 H 0.97004 * 120.00252 * 5.20536 * 20 19 17 43 43 H 1.09002 * 117.50047 * 214.96567 * 25 3 2 44 44 H 1.08993 * 117.50030 * 359.97438 * 25 3 2 45 45 H 1.08996 * 117.50030 * 359.96826 * 26 3 2 46 46 H 1.09002 * 117.49934 * 145.00210 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5058 2.3208 -1.1021 5 8 0.6292 3.1248 -0.8658 6 7 2.0024 2.2127 -2.3503 7 6 3.1225 1.3340 -2.6147 8 6 4.4468 2.0694 -2.5862 9 6 4.6809 2.9260 -3.8114 10 1 5.6778 3.3668 -3.8020 11 6 4.4626 2.0075 -5.0372 12 6 2.9518 2.1308 -5.3421 13 6 2.4718 3.2894 -4.5034 14 1 2.0367 4.0039 -5.2021 15 6 1.3988 3.0013 -3.4719 16 7 3.6275 3.9727 -3.8791 17 6 3.7061 5.2723 -3.4550 18 1 2.8107 5.7993 -3.1602 19 6 4.9368 5.9125 -3.4039 20 7 5.9098 5.5329 -4.2048 21 14 5.2119 7.3126 -2.1984 22 1 6.5992 7.8229 -2.3406 23 1 4.2497 8.4073 -2.4831 24 1 5.0059 6.8203 -0.8125 25 6 2.3102 2.0967 1.3564 26 6 3.4792 1.6830 0.4601 27 1 -0.3634 0.4265 -0.9349 28 1 -0.3633 -1.0230 0.0981 29 1 -0.3634 0.5964 0.8368 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.9914 0.8795 -3.5966 33 1 3.1386 0.5471 -1.8604 34 1 5.2517 1.3381 -2.5115 35 1 4.4740 2.7074 -1.7028 36 1 5.0543 2.3554 -5.8839 37 1 4.7175 0.9767 -4.7911 38 1 2.4343 1.2158 -5.0541 39 1 2.7910 2.3381 -6.4001 40 1 0.5948 2.4260 -3.9310 41 1 1.0024 3.9403 -3.0855 42 1 5.7452 4.8581 -4.8819 43 1 2.1017 3.1624 1.4517 44 1 2.1243 1.4997 2.2491 45 1 4.0625 0.8136 0.7633 46 1 4.0397 2.4765 -0.0342 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045842520.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:52 Heat of formation + Delta-G solvation = 4.626841 kcal Electronic energy + Delta-G solvation = -26133.973523 eV Core-core repulsion = 22831.425381 eV Total energy + Delta-G solvation = -3302.548142 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.90986 -40.20349 -37.86143 -36.07232 -34.62112 -33.84476 -32.88636 -31.16406 -28.95965 -27.65978 -26.04319 -25.19327 -24.29627 -23.46518 -22.50913 -21.20686 -20.92309 -19.34437 -19.14195 -17.71297 -17.55467 -16.65388 -16.35967 -16.21357 -15.77861 -15.74166 -15.13380 -14.89525 -14.72297 -14.41451 -14.28261 -14.00478 -13.64661 -13.36294 -13.33454 -12.97870 -12.90074 -12.64077 -12.58275 -12.47026 -12.38039 -12.12125 -12.02536 -11.95327 -11.81381 -11.63838 -11.41024 -11.31442 -10.97535 -10.92284 -10.57063 -10.48575 -9.55068 -8.89544 -8.29469 -5.39296 1.47764 1.53321 1.63094 1.73491 2.02664 2.54438 2.71928 3.11987 3.44588 3.53959 3.67824 3.80919 3.86724 3.89141 3.95542 4.09549 4.12361 4.28724 4.36317 4.40824 4.53710 4.54716 4.55806 4.60875 4.67999 4.69996 4.77739 4.84685 4.93211 4.97425 5.04149 5.06349 5.09215 5.10325 5.15389 5.18794 5.24264 5.35870 5.38932 5.46616 5.61254 5.67910 5.74994 6.34248 6.58907 6.92850 7.24208 7.66355 8.39282 8.97431 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.015989 B = 0.006960 C = 0.005862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.749685 B = 4022.306326 C = 4775.699701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.070 4.070 3 C -0.155 4.155 4 C 0.540 3.460 5 O -0.601 6.601 6 N -0.584 5.584 7 C 0.109 3.891 8 C -0.142 4.142 9 C 0.131 3.869 10 H 0.049 0.951 11 C -0.120 4.120 12 C -0.106 4.106 13 C 0.129 3.871 14 H 0.014 0.986 15 C 0.123 3.877 16 N -0.597 5.597 17 C -0.321 4.321 18 H 0.027 0.973 19 C -0.066 4.066 20 N -0.929 5.929 21 Si 1.102 2.898 22 H -0.281 1.281 23 H -0.283 1.283 24 H -0.292 1.292 25 C -0.153 4.153 26 C -0.153 4.153 27 H 0.027 0.973 28 H 0.082 0.918 29 H 0.045 0.955 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.030 0.970 36 H 0.048 0.952 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.032 0.968 42 H 0.259 0.741 43 H 0.064 0.936 44 H 0.134 0.866 45 H 0.140 0.860 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.562 -18.090 5.135 19.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 C -0.158 4.158 4 C 0.329 3.671 5 O -0.483 6.483 6 N -0.314 5.314 7 C -0.013 4.013 8 C -0.182 4.182 9 C 0.025 3.975 10 H 0.067 0.933 11 C -0.159 4.159 12 C -0.144 4.144 13 C 0.022 3.978 14 H 0.032 0.968 15 C -0.001 4.001 16 N -0.321 5.321 17 C -0.450 4.450 18 H 0.044 0.956 19 C -0.264 4.264 20 N -0.571 5.571 21 Si 0.928 3.072 22 H -0.207 1.207 23 H -0.209 1.209 24 H -0.219 1.219 25 C -0.190 4.190 26 C -0.190 4.190 27 H 0.046 0.954 28 H 0.101 0.899 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.107 0.893 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.051 0.949 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.152 0.848 45 H 0.158 0.842 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.884 -16.449 5.827 17.878 hybrid contribution -1.324 0.369 -0.806 1.593 sum -5.208 -16.081 5.022 17.633 Atomic orbital electron populations 1.21698 0.95778 1.02340 1.00641 1.21111 0.95697 0.89276 1.04590 1.21499 1.01351 0.98111 0.94862 1.20293 0.81203 0.82247 0.83373 1.90602 1.34938 1.39689 1.83061 1.48213 1.32449 1.43521 1.07216 1.21321 0.84048 0.91587 1.04325 1.21952 0.98326 0.98992 0.98891 1.21404 0.93532 0.88153 0.94379 0.93319 1.22694 0.95672 1.00303 0.97236 1.21832 0.96359 0.97281 0.98884 1.20681 0.89779 0.95300 0.92069 0.96801 1.22190 0.95865 0.94562 0.87471 1.45040 1.10986 1.05842 1.70183 1.19516 0.95355 0.88951 1.41183 0.95557 1.26747 0.93700 1.03887 1.02063 1.70868 1.36201 1.32142 1.17916 0.82996 0.76004 0.73825 0.74357 1.20653 1.20890 1.21904 1.23055 1.01840 1.00497 0.93616 1.23295 0.89512 1.04258 1.01910 0.95382 0.89907 0.93601 0.89669 0.87914 0.88123 0.88034 0.89268 0.95147 0.93287 0.87677 0.88098 0.90716 0.89894 0.94888 0.93052 0.91722 0.84806 0.84187 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.55 71.98 0.69 -2.36 16 2 C -0.07 -1.28 5.70 30.59 0.17 -1.10 16 3 C -0.16 -4.20 0.87 -52.93 -0.05 -4.25 16 4 C 0.54 20.37 5.90 87.66 0.52 20.89 16 5 O -0.60 -28.45 16.60 -3.01 -0.05 -28.50 16 6 N -0.58 -20.69 2.87 -822.80 -2.36 -23.05 16 7 C 0.11 3.03 4.65 86.21 0.40 3.43 16 8 C -0.14 -4.81 4.63 29.56 0.14 -4.67 16 9 C 0.13 5.51 3.11 44.61 0.14 5.64 16 10 H 0.05 2.47 5.81 -2.39 -0.01 2.45 16 11 C -0.12 -3.78 6.04 31.73 0.19 -3.59 16 12 C -0.11 -3.12 5.80 30.45 0.18 -2.95 16 13 C 0.13 5.18 2.59 43.54 0.11 5.29 16 14 H 0.01 0.62 8.09 -2.39 -0.02 0.60 16 15 C 0.12 4.79 6.05 85.28 0.52 5.31 16 16 N -0.60 -29.54 2.45 -651.49 -1.60 -31.14 16 17 C -0.32 -18.87 10.11 84.03 0.85 -18.02 16 18 H 0.03 1.67 7.96 -2.91 -0.02 1.65 16 19 C -0.07 -3.87 5.17 84.86 0.44 -3.43 16 20 N -0.93 -56.39 12.48 21.65 0.27 -56.12 16 21 Si 1.10 54.24 29.99 68.60 2.06 56.30 16 22 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 24 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 25 C -0.15 -4.03 9.82 30.60 0.30 -3.73 16 26 C -0.15 -3.82 8.47 30.60 0.26 -3.56 16 27 H 0.03 0.71 7.63 -2.39 -0.02 0.69 16 28 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.08 1.32 6.73 -2.38 -0.02 1.31 16 31 H 0.10 1.31 8.09 -2.39 -0.02 1.29 16 32 H 0.10 2.36 3.92 -2.39 -0.01 2.35 16 33 H 0.10 2.19 4.64 -2.38 -0.01 2.18 16 34 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 35 H 0.03 1.24 5.72 -2.39 -0.01 1.23 16 36 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.10 2.42 7.38 -2.39 -0.02 2.40 16 38 H 0.10 2.27 6.13 -2.39 -0.01 2.25 16 39 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.03 1.57 7.47 -2.39 -0.02 1.56 16 42 H 0.26 15.76 6.74 -92.71 -0.63 15.13 16 43 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 45 H 0.14 2.36 8.14 -2.39 -0.02 2.35 16 46 H 0.07 2.38 5.78 -2.39 -0.01 2.36 16 Total: -1.00 -77.36 339.51 4.29 -73.07 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 1.11 Total: 16.54 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 4.85 Total: -7.09 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -3.68 Total: -110.31 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -0.05 Total: -28.50 kcal Atomic # 14 Polarization: 54.24 SS G_CDS: 2.06 Total: 56.30 kcal Total: -77.36 4.29 -73.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045842520.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.694 kcal (2) G-P(sol) polarization free energy of solvation -77.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds