Wall clock time and date at job start Tue Mar 31 2020 07:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50709 * 119.99668 * 2 1 4 4 C 1.50690 * 120.00308 * 179.97438 * 2 1 3 5 5 C 1.52997 * 109.47358 * 113.99762 * 4 2 1 6 6 C 1.53003 * 109.47397 * 234.00126 * 4 2 1 7 7 C 1.50707 * 109.46908 * 354.00058 * 4 2 1 8 8 O 1.21284 * 120.00012 * 115.04058 * 7 4 2 9 9 N 1.34774 * 119.99692 * 295.03813 * 7 4 2 10 10 C 1.46744 * 125.33331 * 5.03338 * 9 7 4 11 11 C 1.54117 * 106.62089 * 161.52532 * 10 9 7 12 12 H 1.09004 * 113.47893 * 151.40153 * 11 10 9 13 13 C 1.53971 * 109.47901 * 278.67870 * 11 10 9 14 14 N 1.46779 * 106.62818 * 138.17386 * 13 11 10 15 15 C 1.36929 * 125.33844 * 161.50792 * 14 13 11 16 16 H 1.07998 * 120.00065 * 359.97438 * 15 14 13 17 17 C 1.38815 * 120.00072 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00033 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99943 * 179.97438 * 17 15 14 20 20 H 1.48490 * 109.47394 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.46967 * 120.00294 * 19 17 15 22 22 H 1.48498 * 109.47165 * 239.99725 * 19 17 15 23 23 C 1.46668 * 109.32312 * 341.48912 * 14 13 11 24 24 C 1.53729 * 107.94343 * 0.54260 * 23 14 13 25 25 H 1.09003 * 113.05869 * 140.00201 * 24 23 14 26 26 C 1.46649 * 125.32414 * 185.33146 * 9 7 4 27 27 H 1.07993 * 119.99723 * 174.29825 * 1 2 3 28 28 H 1.07998 * 119.99966 * 354.02918 * 1 2 3 29 29 H 1.08993 * 109.47430 * 359.97438 * 3 2 1 30 30 H 1.09000 * 109.47051 * 120.00273 * 3 2 1 31 31 H 1.09004 * 109.46574 * 239.99558 * 3 2 1 32 32 H 1.09003 * 109.47075 * 60.00355 * 5 4 2 33 33 H 1.09005 * 109.47218 * 179.97438 * 5 4 2 34 34 H 1.09001 * 109.47203 * 300.00291 * 5 4 2 35 35 H 1.09000 * 109.46961 * 51.43170 * 6 4 2 36 36 H 1.09003 * 109.47135 * 171.42398 * 6 4 2 37 37 H 1.08995 * 109.46783 * 291.42708 * 6 4 2 38 38 H 1.09000 * 110.00675 * 280.97200 * 10 9 7 39 39 H 1.09000 * 110.00578 * 42.34262 * 10 9 7 40 40 H 1.08995 * 110.02937 * 257.46847 * 13 11 10 41 41 H 1.09004 * 110.02514 * 18.88557 * 13 11 10 42 42 H 0.96996 * 120.00056 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.77263 * 240.92493 * 23 14 13 44 44 H 1.09000 * 109.77431 * 120.16281 * 23 14 13 45 45 H 1.09000 * 109.76071 * 300.48181 * 26 9 7 46 46 H 1.08996 * 109.76075 * 61.20261 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0636 -1.3050 0.0006 5 6 2.8266 -1.4539 -1.3171 6 6 3.0529 -1.3222 1.1676 7 6 1.0910 -2.4465 0.1496 8 8 0.9507 -3.2453 -0.7522 9 7 0.3772 -2.5797 1.2850 10 6 0.3755 -1.6290 2.4028 11 6 -0.8895 -1.9255 3.2318 12 1 -0.7847 -1.6771 4.2880 13 6 -2.1056 -1.2495 2.5723 14 7 -3.2099 -2.2141 2.6395 15 6 -4.5376 -1.9088 2.5018 16 1 -4.8417 -0.8870 2.3287 17 6 -5.4930 -2.9124 2.5856 18 7 -5.1225 -4.1576 2.7970 19 14 -7.3042 -2.4958 2.3985 20 1 -7.4555 -1.0362 2.1709 21 1 -7.8661 -3.2386 1.2418 22 1 -8.0312 -2.8814 3.6346 23 6 -2.6683 -3.5563 2.8768 24 6 -1.1389 -3.4385 2.9791 25 1 -0.7131 -4.0715 3.7577 26 6 -0.5148 -3.7006 1.5993 27 1 -0.5399 -0.9306 -0.0929 28 1 -0.5400 0.9302 0.0973 29 1 1.3552 2.1337 -0.0005 30 1 2.6902 1.3630 0.8900 31 1 2.6902 1.3629 -0.8900 32 1 3.5301 -0.6283 -1.4249 33 1 3.3721 -2.3977 -1.3165 34 1 2.1218 -1.4417 -2.1485 35 1 2.5315 -1.0652 2.0897 36 1 3.4871 -2.3176 1.2612 37 1 3.8447 -0.5962 0.9834 38 1 1.2669 -1.7704 3.0139 39 1 0.3407 -0.6077 2.0237 40 1 -2.3688 -0.3423 3.1161 41 1 -1.8816 -1.0105 1.5327 42 1 -5.7900 -4.8589 2.8553 43 1 -2.9328 -4.2125 2.0477 44 1 -3.0703 -3.9570 3.8073 45 1 -1.3001 -3.7689 0.8465 46 1 0.0550 -4.6295 1.6229 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048975182.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:37 Heat of formation + Delta-G solvation = 16.282495 kcal Electronic energy + Delta-G solvation = -25389.150479 eV Core-core repulsion = 22087.107764 eV Total energy + Delta-G solvation = -3302.042715 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -40.87383 -38.60473 -36.58701 -34.95267 -32.24250 -32.06824 -30.27803 -29.61758 -27.69865 -27.29480 -25.60546 -25.37160 -23.68973 -22.07737 -20.14101 -20.06631 -19.35231 -18.02876 -16.83936 -16.41198 -16.11786 -15.37568 -15.08115 -14.72428 -13.94759 -13.90318 -13.66341 -13.43241 -13.36044 -12.99644 -12.92129 -12.69048 -12.56695 -12.21370 -12.06595 -11.94247 -11.77298 -11.69864 -11.51921 -11.36156 -11.16102 -10.87122 -10.82310 -10.78019 -10.34928 -10.08522 -9.97534 -9.87571 -9.65087 -9.46520 -8.91955 -8.60175 -8.28116 -6.81973 -5.72111 -3.05183 2.16104 2.79923 3.22812 3.39966 3.45533 3.47960 4.42450 4.49073 4.56050 4.82697 4.89492 4.94826 5.07726 5.16136 5.29041 5.37668 5.45503 5.49427 5.51273 5.53955 5.62292 5.67213 5.73935 5.75787 5.79129 5.81863 5.83584 5.95823 5.98700 6.05978 6.17384 6.21770 6.30063 6.36572 6.57298 6.59371 6.64231 6.72464 6.75123 6.88246 7.55328 7.57007 7.78881 7.81245 8.26576 8.37299 9.22548 9.83165 10.47166 11.39646 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.024194 B = 0.004544 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.033943 B = 6159.970827 C = 6445.241610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.130 4.130 3 C -0.111 4.111 4 C -0.041 4.041 5 C -0.122 4.122 6 C -0.145 4.145 7 C 0.537 3.463 8 O -0.543 6.543 9 N -0.604 5.604 10 C 0.098 3.902 11 C -0.111 4.111 12 H 0.096 0.904 13 C 0.143 3.857 14 N -0.602 5.602 15 C -0.228 4.228 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.922 5.922 19 Si 0.911 3.089 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.187 3.813 24 C -0.122 4.122 25 H 0.087 0.913 26 C 0.118 3.882 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.086 0.914 40 H 0.033 0.967 41 H 0.023 0.977 42 H 0.252 0.748 43 H 0.049 0.951 44 H 0.048 0.952 45 H 0.075 0.925 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.410 8.117 -1.077 19.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.131 4.131 3 C -0.168 4.168 4 C -0.044 4.044 5 C -0.180 4.180 6 C -0.202 4.202 7 C 0.325 3.675 8 O -0.420 6.420 9 N -0.337 5.337 10 C -0.025 4.025 11 C -0.130 4.130 12 H 0.115 0.885 13 C 0.017 3.983 14 N -0.328 5.328 15 C -0.356 4.356 16 H 0.096 0.904 17 C -0.204 4.204 18 N -0.570 5.570 19 Si 0.742 3.258 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.062 3.938 24 C -0.142 4.142 25 H 0.105 0.895 26 C -0.004 4.004 27 H 0.124 0.876 28 H 0.123 0.877 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.051 0.949 41 H 0.040 0.960 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.093 0.907 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 17.161 7.576 -1.636 18.831 hybrid contribution -1.096 0.061 0.009 1.097 sum 16.066 7.637 -1.627 17.863 Atomic orbital electron populations 1.24091 0.95189 1.03187 0.98887 1.21345 0.94944 0.94214 1.02580 1.20800 1.00189 0.93755 1.02044 1.19793 0.94908 0.91325 0.98367 1.21631 0.99578 1.01740 0.95053 1.22013 0.98344 1.02521 0.97353 1.20022 0.80607 0.86173 0.80680 1.90691 1.67097 1.45098 1.39150 1.48235 1.44415 1.23801 1.17230 1.22386 0.97801 0.94350 0.87966 1.22983 0.94372 0.96427 0.99256 0.88534 1.21294 0.87143 0.92983 0.96895 1.44216 1.01335 1.02265 1.85004 1.19080 0.80517 0.93738 1.42244 0.90413 1.24789 0.98091 0.95457 1.02030 1.69959 1.31831 0.99229 1.55935 0.86049 0.85021 0.77432 0.77297 1.20537 1.21758 1.21763 1.21026 0.84164 0.87567 1.01011 1.23130 1.00455 0.95686 0.94962 0.89482 1.21975 0.92726 0.88334 0.97408 0.87573 0.87663 0.91767 0.91629 0.91556 0.92034 0.92009 0.91787 0.91012 0.92139 0.91428 0.91926 0.89601 0.94918 0.95958 0.93773 0.93336 0.93415 0.90712 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.36 10.08 29.01 0.29 -2.07 16 2 C -0.13 -1.49 3.76 -101.07 -0.38 -1.87 16 3 C -0.11 -0.93 9.50 36.01 0.34 -0.59 16 4 C -0.04 -0.50 0.61 -156.81 -0.10 -0.59 16 5 C -0.12 -1.41 7.64 37.16 0.28 -1.12 16 6 C -0.15 -1.40 7.55 37.16 0.28 -1.12 16 7 C 0.54 8.78 4.98 -10.98 -0.05 8.72 16 8 O -0.54 -10.94 16.30 5.55 0.09 -10.85 16 9 N -0.60 -9.63 2.60 -172.25 -0.45 -10.08 16 10 C 0.10 1.32 3.89 -3.33 -0.01 1.31 16 11 C -0.11 -1.78 4.16 -88.25 -0.37 -2.15 16 12 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 13 C 0.14 2.85 6.49 -3.38 -0.02 2.83 16 14 N -0.60 -15.04 3.38 -171.84 -0.58 -15.62 16 15 C -0.23 -6.29 10.25 -15.06 -0.15 -6.45 16 16 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 17 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 18 N -0.92 -26.92 10.25 55.49 0.57 -26.35 16 19 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 C 0.19 4.43 4.77 -3.57 -0.02 4.41 16 24 C -0.12 -2.19 4.01 -88.60 -0.36 -2.55 16 25 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 26 C 0.12 2.12 6.22 -3.60 -0.02 2.09 16 27 H 0.11 1.79 5.09 -52.49 -0.27 1.52 16 28 H 0.11 1.26 7.85 -52.49 -0.41 0.85 16 29 H 0.06 0.51 7.79 -51.93 -0.40 0.10 16 30 H 0.06 0.47 7.52 -51.93 -0.39 0.08 16 31 H 0.07 0.50 7.53 -51.93 -0.39 0.11 16 32 H 0.06 0.54 7.45 -51.93 -0.39 0.16 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.83 8.05 -51.93 -0.42 0.41 16 35 H 0.07 0.67 4.93 -51.93 -0.26 0.41 16 36 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 37 H 0.07 0.51 7.68 -51.93 -0.40 0.12 16 38 H 0.06 0.71 6.57 -51.93 -0.34 0.37 16 39 H 0.09 1.10 4.42 -51.93 -0.23 0.87 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.02 0.46 6.01 -51.93 -0.31 0.15 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.05 1.29 6.73 -51.93 -0.35 0.94 16 44 H 0.05 1.25 7.37 -51.93 -0.38 0.87 16 45 H 0.07 1.59 7.29 -51.93 -0.38 1.22 16 46 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 340.04 15.07 5.12 5.12 Total: -1.00 -31.80 340.04 -8.05 -39.85 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -7.40 Total: 0.26 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -0.38 Total: 0.55 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.46 Total: -52.05 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.80 -8.05 -39.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048975182.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.128 kcal (2) G-P(sol) polarization free energy of solvation -31.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds