Wall clock time and date at job start Tue Mar 31 2020 06:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46928 * 2 1 4 4 C 1.50697 * 112.85538 * 298.79390 * 3 2 1 5 5 O 1.21278 * 120.00250 * 113.96570 * 4 3 2 6 6 N 1.34779 * 119.99629 * 293.97212 * 4 3 2 7 7 C 1.46776 * 125.33981 * 354.95421 * 6 4 3 8 8 C 1.53962 * 106.62944 * 198.51979 * 7 6 4 9 9 H 1.08997 * 113.01654 * 94.27960 * 8 7 6 10 10 C 1.53931 * 109.92371 * 221.56146 * 8 7 6 11 11 N 1.47612 * 106.28212 * 80.84965 * 10 8 7 12 12 C 1.36938 * 125.44411 * 198.70219 * 11 10 8 13 13 H 1.07998 * 120.00258 * 180.82430 * 12 11 10 14 14 C 1.38818 * 119.99674 * 0.82633 * 12 11 10 15 15 N 1.31615 * 119.99963 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00012 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47292 * 89.99557 * 16 14 12 18 18 H 1.48501 * 109.47148 * 210.00159 * 16 14 12 19 19 H 1.48501 * 109.46962 * 330.00058 * 16 14 12 20 20 C 1.46646 * 109.22548 * 19.41680 * 11 10 8 21 21 C 1.53685 * 108.00619 * 358.47362 * 20 11 10 22 22 H 1.09000 * 112.56040 * 105.91344 * 21 20 11 23 23 C 1.46667 * 125.33806 * 174.95881 * 6 4 3 24 24 C 1.53784 * 113.69081 * 70.06563 * 3 2 1 25 25 C 1.53773 * 87.08360 * 89.12275 * 24 3 2 26 26 C 1.53781 * 87.08406 * 25.43592 * 25 24 3 27 27 H 1.08996 * 109.47003 * 55.27814 * 1 2 3 28 28 H 1.08997 * 109.46804 * 175.27185 * 1 2 3 29 29 H 1.09000 * 109.47304 * 295.27766 * 1 2 3 30 30 H 1.08996 * 109.47578 * 240.00265 * 2 1 3 31 31 H 1.08997 * 109.46885 * 120.00020 * 2 1 3 32 32 H 1.09002 * 110.02748 * 79.22944 * 7 6 4 33 33 H 1.09001 * 110.02837 * 317.81652 * 7 6 4 34 34 H 1.08996 * 110.01222 * 201.20774 * 10 8 7 35 35 H 1.09003 * 110.00328 * 322.57469 * 10 8 7 36 36 H 0.96996 * 120.00412 * 180.02562 * 15 14 12 37 37 H 1.08998 * 109.75946 * 238.83053 * 20 11 10 38 38 H 1.09001 * 109.76050 * 118.11194 * 20 11 10 39 39 H 1.09008 * 109.76925 * 59.83425 * 23 6 4 40 40 H 1.09000 * 109.79307 * 299.08434 * 23 6 4 41 41 H 1.09002 * 113.61202 * 203.67777 * 24 3 2 42 42 H 1.09004 * 113.61307 * 334.57180 * 24 3 2 43 43 H 1.08997 * 113.61952 * 270.88183 * 25 24 3 44 44 H 1.09010 * 113.69290 * 139.99310 * 25 24 3 45 45 H 1.09000 * 113.61489 * 220.02196 * 26 25 24 46 46 H 1.08997 * 113.61612 * 89.10932 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6044 2.2173 -1.2170 5 8 0.8425 3.1534 -1.0992 6 7 2.0616 1.8697 -2.4363 7 6 3.0631 0.8303 -2.7029 8 6 3.6097 1.0977 -4.1172 9 1 4.5185 1.6995 -4.1161 10 6 3.7688 -0.2310 -4.8779 11 7 2.4275 -0.5805 -5.3854 12 6 2.0331 -1.8263 -5.7949 13 1 1.0302 -1.9810 -6.1645 14 6 2.9225 -2.8905 -5.7349 15 7 4.1449 -2.7019 -5.2849 16 14 2.3849 -4.5898 -6.2942 17 1 2.6769 -4.7500 -7.7413 18 1 3.1236 -5.6215 -5.5228 19 1 0.9266 -4.7486 -6.0630 20 6 1.5877 0.6216 -5.3981 21 6 2.4182 1.7872 -4.8383 22 1 2.7401 2.4818 -5.6142 23 6 1.6366 2.4709 -3.7047 24 6 1.7932 2.1851 1.3239 25 6 3.1566 1.6470 1.7889 26 6 3.5428 1.5646 0.3027 27 1 -0.3633 0.5853 -0.8446 28 1 -0.3633 -1.0242 -0.0847 29 1 -0.3634 0.4388 0.9293 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.5984 -0.1549 -2.6624 33 1 3.8699 0.8932 -1.9727 34 1 4.4785 -0.1097 -5.6962 35 1 4.1124 -1.0110 -4.1983 36 1 4.7665 -3.4453 -5.2433 37 1 0.7078 0.4630 -4.7745 38 1 1.2800 0.8454 -6.4195 39 1 1.8551 3.5388 -3.6981 40 1 0.5674 2.3143 -3.8474 41 1 1.7650 3.2696 1.2175 42 1 0.9513 1.7927 1.8942 43 1 3.0983 0.6753 2.2794 44 1 3.7441 2.3713 2.3532 45 1 4.1133 0.6713 0.0487 46 1 3.9929 2.4794 -0.0828 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048993430.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:31 Heat of formation + Delta-G solvation = 8.090323 kcal Electronic energy + Delta-G solvation = -25300.345378 eV Core-core repulsion = 21997.947423 eV Total energy + Delta-G solvation = -3302.397954 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.86177 -39.10094 -37.25955 -34.89279 -32.54080 -32.11237 -30.10157 -29.77699 -26.75170 -25.80679 -25.33084 -25.10433 -23.23636 -22.41151 -20.17711 -19.92202 -19.33309 -18.23829 -17.01317 -16.51843 -15.94120 -15.60722 -15.36829 -14.73248 -14.42587 -13.94908 -13.85188 -13.63008 -13.10637 -12.91611 -12.64597 -12.50818 -12.41623 -12.14390 -11.86221 -11.64863 -11.51219 -11.49184 -11.43066 -11.24793 -10.99535 -10.87105 -10.80053 -10.37064 -10.35963 -10.20592 -10.15745 -9.98850 -9.85670 -9.63086 -9.31358 -8.67673 -8.26781 -6.88224 -5.73266 -3.11624 2.85933 3.30001 3.36838 3.42714 3.43840 4.40084 4.44009 4.45396 4.63146 4.73107 4.79822 4.97707 5.12300 5.24514 5.29114 5.38008 5.45730 5.47562 5.55288 5.62638 5.68703 5.71464 5.74128 5.80952 5.83714 5.87678 5.90756 5.95498 6.03575 6.07696 6.19377 6.25689 6.29047 6.32581 6.38439 6.40708 6.59800 6.67598 6.70605 6.83592 7.39115 7.57879 7.75746 7.84795 8.26375 8.42950 9.16695 9.77738 10.41559 11.33370 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.018473 B = 0.005007 C = 0.004571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.398307 B = 5590.940650 C = 6124.668021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.100 4.100 3 C -0.098 4.098 4 C 0.544 3.456 5 O -0.553 6.553 6 N -0.606 5.606 7 C 0.111 3.889 8 C -0.123 4.123 9 H 0.085 0.915 10 C 0.169 3.831 11 N -0.601 5.601 12 C -0.223 4.223 13 H 0.077 0.923 14 C -0.009 4.009 15 N -0.923 5.923 16 Si 0.912 3.088 17 H -0.289 1.289 18 H -0.290 1.290 19 H -0.282 1.282 20 C 0.143 3.857 21 C -0.109 4.109 22 H 0.094 0.906 23 C 0.120 3.880 24 C -0.112 4.112 25 C -0.140 4.140 26 C -0.127 4.127 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.021 0.979 35 H 0.099 0.901 36 H 0.252 0.748 37 H 0.025 0.975 38 H 0.021 0.979 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.494 7.986 10.984 13.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.137 4.137 3 C -0.101 4.101 4 C 0.333 3.667 5 O -0.432 6.432 6 N -0.338 5.338 7 C -0.012 4.012 8 C -0.143 4.143 9 H 0.103 0.897 10 C 0.044 3.956 11 N -0.327 5.327 12 C -0.351 4.351 13 H 0.095 0.905 14 C -0.204 4.204 15 N -0.572 5.572 16 Si 0.743 3.257 17 H -0.216 1.216 18 H -0.216 1.216 19 H -0.207 1.207 20 C 0.017 3.983 21 C -0.129 4.129 22 H 0.112 0.888 23 C -0.003 4.003 24 C -0.149 4.149 25 C -0.177 4.177 26 C -0.165 4.165 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.039 0.961 35 H 0.117 0.883 36 H 0.063 0.937 37 H 0.043 0.957 38 H 0.039 0.961 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.106 0.894 42 H 0.090 0.910 43 H 0.101 0.899 44 H 0.087 0.913 45 H 0.097 0.903 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.862 8.274 11.101 13.872 hybrid contribution -0.210 -0.872 -0.595 1.076 sum -1.072 7.401 10.506 12.896 Atomic orbital electron populations 1.21725 0.95260 1.01806 1.01914 1.21345 0.96482 0.92495 1.03381 1.22114 0.97848 0.96849 0.93325 1.20017 0.80045 0.83668 0.82973 1.90643 1.36816 1.29881 1.85834 1.48298 1.42101 1.37974 1.05458 1.22233 0.90426 0.91667 0.96825 1.23240 0.96811 1.00366 0.93922 0.89679 1.21559 0.86968 0.90870 0.96169 1.44439 1.08666 1.03812 1.75813 1.19063 0.97171 0.83618 1.35236 0.90494 1.24752 0.95921 0.98109 1.01632 1.69831 1.04910 1.30193 1.52247 0.86104 0.77636 0.83855 0.78111 1.21634 1.21640 1.20717 1.21204 0.93406 0.86461 0.97241 1.22765 0.96237 0.97525 0.96331 0.88820 1.21754 0.98873 0.96808 0.82895 1.22826 0.97487 1.00579 0.94051 1.22829 0.97271 1.01543 0.96090 1.22992 0.94127 1.02814 0.96550 0.92760 0.92293 0.92706 0.90334 0.90841 0.90112 0.91362 0.96126 0.88313 0.93699 0.95713 0.96100 0.92233 0.91654 0.89415 0.90982 0.89882 0.91255 0.90254 0.89902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.63 37.16 0.36 -1.59 16 2 C -0.10 -1.27 5.20 -26.73 -0.14 -1.41 16 3 C -0.10 -1.29 0.36 -154.84 -0.06 -1.34 16 4 C 0.54 8.94 5.73 -10.99 -0.06 8.88 16 5 O -0.55 -10.68 16.48 5.56 0.09 -10.59 16 6 N -0.61 -9.91 3.31 -172.29 -0.57 -10.48 16 7 C 0.11 1.81 5.05 -3.39 -0.02 1.79 16 8 C -0.12 -2.14 4.12 -88.35 -0.36 -2.50 16 9 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 10 C 0.17 3.80 4.94 -2.95 -0.01 3.78 16 11 N -0.60 -14.59 3.39 -171.23 -0.58 -15.17 16 12 C -0.22 -5.98 10.25 -15.06 -0.15 -6.13 16 13 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 14 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 15 N -0.92 -25.64 10.15 55.49 0.56 -25.08 16 16 Si 0.91 21.48 29.55 -169.99 -5.02 16.46 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 C 0.14 2.90 6.60 -3.61 -0.02 2.87 16 21 C -0.11 -1.83 4.01 -88.60 -0.36 -2.18 16 22 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 23 C 0.12 1.93 6.24 -3.57 -0.02 1.91 16 24 C -0.11 -1.30 6.76 -25.92 -0.18 -1.48 16 25 C -0.14 -1.35 7.73 -25.92 -0.20 -1.55 16 26 C -0.13 -1.43 5.55 -25.91 -0.14 -1.57 16 27 H 0.05 0.83 7.29 -51.93 -0.38 0.45 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.64 7.18 -51.93 -0.37 0.27 16 30 H 0.08 1.13 5.98 -51.93 -0.31 0.82 16 31 H 0.07 0.79 7.30 -51.93 -0.38 0.41 16 32 H 0.08 1.53 6.46 -51.93 -0.34 1.19 16 33 H 0.07 0.98 5.75 -51.93 -0.30 0.68 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.10 2.46 5.98 -51.93 -0.31 2.15 16 36 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 37 H 0.03 0.52 7.29 -51.93 -0.38 0.14 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 40 H 0.07 1.09 7.44 -51.93 -0.39 0.70 16 41 H 0.09 1.12 7.72 -51.93 -0.40 0.72 16 42 H 0.07 0.79 7.11 -51.93 -0.37 0.42 16 43 H 0.08 0.72 7.60 -51.93 -0.39 0.32 16 44 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 45 H 0.08 0.85 7.48 -51.93 -0.39 0.46 16 46 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16 LS Contribution 343.67 15.07 5.18 5.18 Total: -1.00 -29.79 343.67 -9.44 -39.22 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -7.63 Total: 1.30 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -1.47 Total: -0.85 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: -0.59 Total: -50.73 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.79 -9.44 -39.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048993430.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.315 kcal (2) G-P(sol) polarization free energy of solvation -29.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds