Wall clock time and date at job start Tue Mar 31 2020 06:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47070 * 2 1 4 4 C 1.50692 * 109.47207 * 120.00319 * 2 1 3 5 5 O 1.21280 * 120.00125 * 234.33346 * 4 2 1 6 6 N 1.34773 * 120.00130 * 54.61427 * 4 2 1 7 7 C 1.46747 * 125.32828 * 3.67544 * 6 4 2 8 8 C 1.54094 * 106.63610 * 161.58735 * 7 6 4 9 9 H 1.08994 * 113.49784 * 151.36723 * 8 7 6 10 10 C 1.53966 * 109.44868 * 278.64519 * 8 7 6 11 11 N 1.46773 * 106.63151 * 138.17759 * 10 8 7 12 12 C 1.36936 * 125.34114 * 161.51956 * 11 10 8 13 13 H 1.07999 * 119.99822 * 5.03815 * 12 11 10 14 14 C 1.38808 * 120.00233 * 185.03323 * 12 11 10 15 15 N 1.31621 * 119.99642 * 5.09852 * 14 12 11 16 16 Si 1.86798 * 120.00305 * 185.09378 * 14 12 11 17 17 H 1.48505 * 109.46826 * 95.00161 * 16 14 12 18 18 H 1.48500 * 109.47511 * 215.00119 * 16 14 12 19 19 H 1.48498 * 109.47022 * 335.00573 * 16 14 12 20 20 C 1.46674 * 109.31930 * 341.47714 * 11 10 8 21 21 C 1.53718 * 107.94389 * 0.55077 * 20 11 10 22 22 H 1.09005 * 113.05899 * 139.99777 * 21 20 11 23 23 C 1.46642 * 125.33126 * 183.98859 * 6 4 2 24 24 C 1.53003 * 109.46942 * 240.00310 * 2 1 3 25 25 C 1.53005 * 117.49897 * 123.21037 * 24 2 1 26 26 C 1.53004 * 117.49769 * 54.54917 * 24 2 1 27 27 H 1.09002 * 109.47026 * 304.56907 * 1 2 3 28 28 H 1.09000 * 109.47437 * 64.56473 * 1 2 3 29 29 H 1.08997 * 109.47334 * 184.56895 * 1 2 3 30 30 H 1.09000 * 109.46624 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47302 * 299.99914 * 3 2 1 32 32 H 1.08997 * 109.47020 * 60.00211 * 3 2 1 33 33 H 1.08997 * 110.00797 * 281.01644 * 7 6 4 34 34 H 1.09000 * 110.00723 * 42.38430 * 7 6 4 35 35 H 1.08999 * 110.02325 * 257.46907 * 10 8 7 36 36 H 1.09000 * 110.02517 * 18.88033 * 10 8 7 37 37 H 0.97010 * 119.99784 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.77262 * 240.92415 * 20 11 10 39 39 H 1.09010 * 109.76716 * 120.16970 * 20 11 10 40 40 H 1.09001 * 109.76035 * 300.43592 * 23 6 4 41 41 H 1.08997 * 109.76149 * 61.15399 * 23 6 4 42 42 H 1.08994 * 115.55302 * 268.87403 * 24 2 1 43 43 H 1.08999 * 117.49841 * 359.97438 * 25 24 2 44 44 H 1.08997 * 117.50313 * 145.02177 * 25 24 2 45 45 H 1.08998 * 117.49260 * 214.97848 * 26 24 2 46 46 H 1.08995 * 117.50124 * 359.97389 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.8118 -0.1553 1.9754 6 7 1.6197 -1.9648 1.4999 7 6 0.7479 -2.7744 0.6408 8 6 0.9245 -4.2385 1.0876 9 1 0.0423 -4.8549 0.9153 10 6 2.1989 -4.8194 0.4481 11 7 2.8691 -5.6083 1.4887 12 6 3.8201 -6.5680 1.2659 13 1 4.1913 -6.7386 0.2662 14 6 4.3071 -7.3216 2.3250 15 7 3.7845 -7.1845 3.5253 16 14 5.7039 -8.5303 2.0469 17 1 6.9961 -7.8784 2.3795 18 1 5.5107 -9.7186 2.9163 19 1 5.7153 -8.9546 0.6239 20 6 2.3610 -5.2066 2.8047 21 6 1.3019 -4.1135 2.5900 22 1 0.4411 -4.2174 3.2507 23 6 1.9665 -2.7321 2.7005 24 6 2.0399 -0.7212 -1.2493 25 6 2.9762 0.0531 -2.1793 26 6 1.5332 -0.2279 -2.6061 27 1 -0.3633 0.5831 0.8462 28 1 -0.3634 0.4414 -0.9280 29 1 -0.3634 -1.0244 0.0819 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 -0.2900 -2.4661 0.7666 34 1 1.0460 -2.6650 -0.4019 35 1 1.9356 -5.4594 -0.3940 36 1 2.8504 -4.0118 0.1141 37 1 4.1251 -7.7109 4.2655 38 1 3.1776 -4.8150 3.4113 39 1 1.9097 -6.0646 3.3032 40 1 3.0485 -2.8477 2.7642 41 1 1.5982 -2.2157 3.5869 42 1 2.2148 -1.7910 -1.1361 43 1 3.2286 1.0764 -1.9013 44 1 3.7668 -0.5075 -2.6782 45 1 1.3751 -0.9733 -3.3855 46 1 0.8363 0.6101 -2.6087 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048998038.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:29 Heat of formation + Delta-G solvation = 25.697981 kcal Electronic energy + Delta-G solvation = -25111.604425 eV Core-core repulsion = 21809.969996 eV Total energy + Delta-G solvation = -3301.634429 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 4.86 seconds Orbital eigenvalues (eV) -40.79310 -38.85978 -37.41989 -35.01262 -33.09240 -32.11132 -30.23704 -29.63847 -27.52337 -25.94582 -25.46299 -24.30917 -22.93223 -22.32722 -20.52982 -20.05510 -19.38288 -18.66106 -17.12278 -16.63351 -16.07159 -15.80108 -15.04332 -14.75306 -14.62269 -14.05246 -13.73513 -13.48998 -13.12437 -13.06472 -12.80240 -12.60342 -12.48455 -12.10273 -11.86633 -11.80311 -11.72699 -11.50896 -11.36776 -11.15122 -10.88802 -10.85499 -10.78016 -10.62781 -10.24795 -10.10804 -10.09010 -10.01417 -9.87315 -9.66108 -9.38872 -8.62889 -8.30845 -6.83384 -5.71949 -3.07669 2.80559 3.21566 3.39886 3.45124 3.46891 3.67881 4.36025 4.48056 4.52826 4.71687 4.77068 4.87786 4.91244 5.05375 5.14459 5.25381 5.27046 5.43546 5.45993 5.49666 5.51693 5.59775 5.66741 5.70544 5.73085 5.76086 5.78890 5.88499 5.94454 6.00096 6.06520 6.09465 6.15973 6.22066 6.28538 6.34841 6.57856 6.62283 6.70491 6.83092 7.46869 7.61369 7.77975 7.80526 8.26265 8.39061 9.20821 9.81710 10.45659 11.37892 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.022480 B = 0.004361 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.242651 B = 6419.204218 C = 6779.463348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.045 4.045 3 C -0.128 4.128 4 C 0.538 3.462 5 O -0.544 6.544 6 N -0.605 5.605 7 C 0.102 3.898 8 C -0.111 4.111 9 H 0.099 0.901 10 C 0.145 3.855 11 N -0.600 5.600 12 C -0.230 4.230 13 H 0.077 0.923 14 C -0.006 4.006 15 N -0.920 5.920 16 Si 0.912 3.088 17 H -0.289 1.289 18 H -0.291 1.291 19 H -0.281 1.281 20 C 0.183 3.817 21 C -0.121 4.121 22 H 0.088 0.912 23 C 0.117 3.883 24 C -0.152 4.152 25 C -0.179 4.179 26 C -0.172 4.172 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.034 0.966 36 H 0.016 0.984 37 H 0.252 0.748 38 H 0.037 0.963 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.115 0.885 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.845 13.813 -9.312 19.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.048 4.048 3 C -0.186 4.186 4 C 0.326 3.674 5 O -0.421 6.421 6 N -0.338 5.338 7 C -0.021 4.021 8 C -0.131 4.131 9 H 0.117 0.883 10 C 0.019 3.981 11 N -0.327 5.327 12 C -0.358 4.358 13 H 0.095 0.905 14 C -0.203 4.203 15 N -0.568 5.568 16 Si 0.742 3.258 17 H -0.216 1.216 18 H -0.217 1.217 19 H -0.206 1.206 20 C 0.058 3.942 21 C -0.141 4.141 22 H 0.106 0.894 23 C -0.005 4.005 24 C -0.170 4.170 25 C -0.216 4.216 26 C -0.209 4.209 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.053 0.947 36 H 0.034 0.966 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.133 0.867 43 H 0.120 0.880 44 H 0.112 0.888 45 H 0.114 0.886 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.269 14.022 -8.791 18.969 hybrid contribution 0.767 -0.763 -0.035 1.083 sum -8.502 13.259 -8.827 18.055 Atomic orbital electron populations 1.22137 0.92631 1.03748 1.02443 1.20208 0.96845 0.96035 0.91730 1.21766 1.02109 0.93105 1.01580 1.20076 0.80563 0.80116 0.86631 1.90678 1.34588 1.65986 1.50830 1.48208 1.49511 1.13703 1.22367 1.22325 0.93749 0.90836 0.95207 1.23003 0.99966 0.93963 0.96170 0.88329 1.21242 0.90524 0.93855 0.92508 1.44202 1.45632 1.42341 1.00488 1.19041 1.12755 1.09732 0.94247 0.90489 1.24799 1.00082 0.99684 0.95720 1.69948 1.43221 1.43747 0.99857 0.86101 0.82007 0.80448 0.77224 1.21642 1.21700 1.20624 1.21085 0.92326 0.92973 0.87814 1.23122 0.99823 0.95191 0.95985 0.89355 1.21981 1.01012 0.90893 0.86575 1.22377 1.05080 0.99802 0.89739 1.23180 0.93411 1.01930 1.03097 1.22968 0.97360 1.03431 0.97090 0.92297 0.91479 0.90709 0.91433 0.92145 0.92114 0.91466 0.90195 0.94732 0.96633 0.93722 0.94532 0.91975 0.90796 0.92369 0.86745 0.87986 0.88774 0.88625 0.88667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.17 37.16 0.30 -1.16 16 2 C -0.05 -0.54 0.60 -155.66 -0.09 -0.63 16 3 C -0.13 -1.44 6.36 37.16 0.24 -1.20 16 4 C 0.54 8.76 6.54 -10.99 -0.07 8.69 16 5 O -0.54 -10.93 16.30 5.56 0.09 -10.84 16 6 N -0.60 -9.61 3.28 -172.28 -0.56 -10.17 16 7 C 0.10 1.34 4.20 -3.34 -0.01 1.33 16 8 C -0.11 -1.77 4.16 -88.26 -0.37 -2.14 16 9 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 10 C 0.15 2.90 6.49 -3.39 -0.02 2.87 16 11 N -0.60 -15.06 3.38 -171.84 -0.58 -15.64 16 12 C -0.23 -6.36 10.24 -15.06 -0.15 -6.52 16 13 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 14 C -0.01 -0.18 5.46 -17.43 -0.10 -0.28 16 15 N -0.92 -26.80 10.34 55.49 0.57 -26.23 16 16 Si 0.91 22.14 29.56 -169.99 -5.02 17.12 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 20 C 0.18 4.32 4.81 -3.57 -0.02 4.30 16 21 C -0.12 -2.16 4.01 -88.60 -0.36 -2.52 16 22 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 23 C 0.12 2.10 6.22 -3.60 -0.02 2.08 16 24 C -0.15 -1.69 4.35 -90.61 -0.39 -2.09 16 25 C -0.18 -1.80 9.50 -26.69 -0.25 -2.05 16 26 C -0.17 -1.47 9.36 -26.69 -0.25 -1.72 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.52 6.80 -51.93 -0.35 0.17 16 29 H 0.07 0.70 4.29 -51.93 -0.22 0.48 16 30 H 0.07 0.84 7.15 -51.93 -0.37 0.47 16 31 H 0.06 0.53 7.19 -51.93 -0.37 0.16 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.73 6.33 -51.93 -0.33 0.40 16 34 H 0.08 0.97 4.82 -51.93 -0.25 0.72 16 35 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.02 0.33 7.72 -51.93 -0.40 -0.07 16 37 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.04 0.97 7.13 -51.93 -0.37 0.60 16 39 H 0.06 1.63 6.96 -51.92 -0.36 1.27 16 40 H 0.07 1.57 7.29 -51.93 -0.38 1.19 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.11 1.45 5.79 -51.93 -0.30 1.15 16 43 H 0.10 0.97 5.82 -51.93 -0.30 0.67 16 44 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.09 0.71 7.05 -51.93 -0.37 0.34 16 LS Contribution 340.27 15.07 5.13 5.13 Total: -1.00 -31.91 340.27 -9.26 -41.17 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -7.31 Total: 0.49 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -1.57 Total: -1.04 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: -0.57 Total: -52.03 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.91 -9.26 -41.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048998038.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.869 kcal (2) G-P(sol) polarization free energy of solvation -31.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.87 seconds