Wall clock time and date at job start Tue Mar 31 2020 08:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46994 * 2 1 4 4 C 1.52996 * 109.47124 * 179.97438 * 3 2 1 5 5 H 1.09003 * 115.56336 * 29.31178 * 4 3 2 6 6 C 1.53074 * 117.49358 * 243.60207 * 4 3 2 7 7 C 1.52997 * 117.49761 * 174.99836 * 4 3 2 8 8 H 1.09000 * 117.50253 * 359.97438 * 7 4 3 9 9 C 1.50703 * 117.49689 * 214.97866 * 7 4 3 10 10 O 1.21284 * 120.00317 * 0.09205 * 9 7 4 11 11 N 1.34779 * 120.00101 * 180.08535 * 9 7 4 12 12 C 1.46776 * 125.33520 * 0.02562 * 11 9 7 13 13 C 1.53971 * 106.62673 * 198.51561 * 12 11 9 14 14 H 1.09002 * 113.01755 * 94.27673 * 13 12 11 15 15 C 1.53926 * 109.91794 * 221.55636 * 13 12 11 16 16 N 1.47621 * 106.28305 * 80.85137 * 15 13 12 17 17 C 1.36936 * 125.43814 * 198.68628 * 16 15 13 18 18 H 1.08002 * 119.99503 * 180.83715 * 17 16 15 19 19 C 1.38811 * 120.00226 * 0.83460 * 17 16 15 20 20 N 1.31614 * 120.00009 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00001 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47135 * 90.00303 * 21 19 17 23 23 H 1.48498 * 109.47299 * 210.00536 * 21 19 17 24 24 H 1.48509 * 109.46927 * 330.00459 * 21 19 17 25 25 C 1.46632 * 109.22512 * 19.40863 * 16 15 13 26 26 C 1.53696 * 108.01255 * 358.47815 * 25 16 15 27 27 H 1.09004 * 113.05609 * 106.18489 * 26 25 16 28 28 C 1.46663 * 125.34360 * 179.97438 * 11 9 7 29 29 H 1.08995 * 109.47452 * 300.00045 * 1 2 3 30 30 H 1.08998 * 109.46742 * 60.00525 * 1 2 3 31 31 H 1.09000 * 109.47164 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47118 * 239.99557 * 2 1 3 33 33 H 1.08998 * 109.46742 * 119.99475 * 2 1 3 34 34 H 1.09004 * 109.46944 * 59.99523 * 3 2 1 35 35 H 1.09006 * 109.46941 * 299.99980 * 3 2 1 36 36 H 1.08998 * 117.51603 * 145.04257 * 6 4 3 37 37 H 1.09001 * 117.51422 * 359.97438 * 6 4 3 38 38 H 1.09003 * 110.03209 * 79.22309 * 12 11 9 39 39 H 1.08996 * 110.02884 * 317.80292 * 12 11 9 40 40 H 1.08995 * 110.01213 * 201.20095 * 15 13 12 41 41 H 1.08999 * 110.00929 * 322.56835 * 15 13 12 42 42 H 0.97005 * 120.00075 * 179.97438 * 20 19 17 43 43 H 1.08994 * 109.76271 * 238.83852 * 25 16 15 44 44 H 1.09002 * 109.76158 * 118.11564 * 25 16 15 45 45 H 1.09013 * 109.76822 * 59.83729 * 28 11 9 46 46 H 1.09001 * 109.79079 * 299.09448 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 4.0405 0.5851 -0.4804 6 6 4.2761 2.0465 1.2171 7 6 4.2764 2.7945 -0.1176 8 1 3.6512 3.6839 -0.1963 9 6 5.5695 2.8387 -0.8902 10 8 6.0115 1.8265 -1.3913 11 7 6.2350 4.0030 -1.0244 12 6 5.8092 5.2930 -0.4686 13 6 6.5776 6.3808 -1.2413 14 1 6.0166 6.7801 -2.0863 15 6 7.0600 7.4726 -0.2694 16 7 8.2892 6.9519 0.3609 17 6 8.8426 7.4158 1.5244 18 1 9.7551 6.9773 1.9007 19 6 8.2309 8.4496 2.2201 20 7 7.1187 8.9836 1.7618 21 14 8.9856 9.0818 3.8077 22 1 9.9344 10.1822 3.5008 23 1 7.9114 9.5886 4.6990 24 1 9.7109 7.9772 4.4852 25 6 8.8343 5.8700 -0.4651 26 6 7.8909 5.6633 -1.6607 27 1 8.2986 6.0443 -2.5970 28 6 7.4984 4.1796 -1.7479 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 5.2112 1.5864 1.5363 37 1 3.6507 2.4440 2.0165 38 1 6.0571 5.3428 0.5917 39 1 4.7362 5.4237 -0.6080 40 1 7.2594 8.3954 -0.8142 41 1 6.3066 7.6478 0.4985 42 1 6.6911 9.7058 2.2482 43 1 8.8930 4.9528 0.1209 44 1 9.8272 6.1434 -0.8222 45 1 7.3687 3.8936 -2.7918 46 1 8.2743 3.5652 -1.2911 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049043885.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:32:25 Heat of formation + Delta-G solvation = 3.533962 kcal Electronic energy + Delta-G solvation = -23851.798950 eV Core-core repulsion = 20549.203417 eV Total energy + Delta-G solvation = -3302.595533 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 5.56 seconds Orbital eigenvalues (eV) -40.29492 -38.75590 -36.96027 -34.88953 -33.99936 -32.28557 -30.11087 -29.80785 -27.69463 -25.81616 -25.48532 -24.04879 -22.35399 -21.92801 -20.60686 -20.10968 -19.34253 -18.77512 -17.30553 -16.73650 -15.87719 -15.46097 -15.23272 -14.84389 -14.72763 -14.22043 -13.79263 -13.58628 -13.31849 -12.98551 -12.81495 -12.73354 -12.30791 -12.26245 -12.03689 -11.77062 -11.51010 -11.47825 -11.45155 -11.18275 -11.00799 -10.97154 -10.84775 -10.39851 -10.28880 -10.16174 -10.12630 -9.95586 -9.86802 -9.65337 -9.55953 -8.67868 -8.31896 -6.88348 -5.73166 -3.11627 2.66736 3.17697 3.37143 3.42815 3.44164 3.83594 4.41904 4.45030 4.66073 4.74545 4.83365 4.91945 4.97622 4.99831 5.12670 5.16024 5.27452 5.36549 5.45519 5.51922 5.54193 5.61871 5.67616 5.68288 5.70003 5.75938 5.84602 5.87889 5.93317 5.94318 6.04410 6.07177 6.18961 6.27223 6.28272 6.38135 6.55700 6.65632 6.69512 6.82693 7.38678 7.57826 7.75513 7.79695 8.26453 8.38279 9.16648 9.77726 10.41413 11.33459 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.018556 B = 0.003569 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.555681 B = 7843.130013 C = 8685.885196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.120 4.120 5 H 0.116 0.884 6 C -0.146 4.146 7 C -0.184 4.184 8 H 0.122 0.878 9 C 0.556 3.444 10 O -0.554 6.554 11 N -0.605 5.605 12 C 0.114 3.886 13 C -0.123 4.123 14 H 0.086 0.914 15 C 0.169 3.831 16 N -0.602 5.602 17 C -0.223 4.223 18 H 0.077 0.923 19 C -0.010 4.010 20 N -0.923 5.923 21 Si 0.913 3.087 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.143 3.857 26 C -0.109 4.109 27 H 0.095 0.905 28 C 0.120 3.880 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.021 0.979 41 H 0.099 0.901 42 H 0.252 0.748 43 H 0.025 0.975 44 H 0.022 0.978 45 H 0.060 0.940 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.182 -11.953 -4.929 16.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.127 4.127 4 C -0.139 4.139 5 H 0.134 0.866 6 C -0.183 4.183 7 C -0.205 4.205 8 H 0.140 0.860 9 C 0.345 3.655 10 O -0.434 6.434 11 N -0.337 5.337 12 C -0.009 4.009 13 C -0.143 4.143 14 H 0.104 0.896 15 C 0.044 3.956 16 N -0.328 5.328 17 C -0.351 4.351 18 H 0.095 0.905 19 C -0.205 4.205 20 N -0.572 5.572 21 Si 0.744 3.256 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.207 1.207 25 C 0.017 3.983 26 C -0.128 4.128 27 H 0.113 0.887 28 C -0.003 4.003 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.039 0.961 41 H 0.117 0.883 42 H 0.063 0.937 43 H 0.043 0.957 44 H 0.040 0.960 45 H 0.079 0.921 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.019 -12.398 -5.005 16.707 hybrid contribution 0.535 0.660 0.736 1.124 sum -9.484 -11.738 -4.268 15.683 Atomic orbital electron populations 1.21782 0.95949 1.01521 1.01801 1.21498 0.95559 0.96601 1.02280 1.21242 0.92034 0.97231 1.02239 1.22448 0.94518 0.95533 1.01377 0.86608 1.23094 1.03005 1.01876 0.90350 1.22252 0.97551 0.98542 1.02124 0.85981 1.19265 0.84516 0.81740 0.79988 1.90653 1.69251 1.33514 1.49941 1.48243 1.23644 1.08601 1.53224 1.22134 0.98270 0.81173 0.99282 1.23238 0.94759 0.97172 0.99133 0.89586 1.21565 0.90354 0.90275 0.93403 1.44445 1.26585 1.37900 1.23865 1.19064 1.05764 1.13442 0.96839 0.90466 1.24766 0.97721 0.98705 0.99317 1.69834 1.19343 1.28262 1.39734 0.86087 0.77963 0.78721 0.82820 1.21635 1.21634 1.20711 1.21198 0.94618 0.92373 0.90115 1.22778 0.97247 0.93104 0.99709 0.88728 1.21783 0.85754 0.96655 0.96104 0.92756 0.92765 0.92842 0.91875 0.91822 0.91559 0.91461 0.88370 0.87772 0.90007 0.91685 0.96063 0.88285 0.93698 0.95677 0.96028 0.92124 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.12 -0.99 5.89 -26.73 -0.16 -1.15 16 3 C -0.09 -0.82 5.50 -26.73 -0.15 -0.97 16 4 C -0.12 -1.38 5.25 -90.59 -0.48 -1.85 16 5 H 0.12 1.49 7.60 -51.93 -0.39 1.10 16 6 C -0.15 -1.72 9.88 -26.69 -0.26 -1.98 16 7 C -0.18 -2.43 5.24 -91.77 -0.48 -2.91 16 8 H 0.12 1.46 7.15 -51.93 -0.37 1.08 16 9 C 0.56 9.29 7.62 -10.98 -0.08 9.21 16 10 O -0.55 -10.78 16.57 5.55 0.09 -10.69 16 11 N -0.60 -10.06 3.31 -172.29 -0.57 -10.63 16 12 C 0.11 1.89 5.87 -3.39 -0.02 1.87 16 13 C -0.12 -2.14 4.12 -88.35 -0.36 -2.51 16 14 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 15 C 0.17 3.82 4.94 -2.95 -0.01 3.80 16 16 N -0.60 -14.74 3.39 -171.23 -0.58 -15.32 16 17 C -0.22 -6.03 10.25 -15.06 -0.15 -6.19 16 18 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 19 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 20 N -0.92 -25.81 10.15 55.49 0.56 -25.24 16 21 Si 0.91 21.60 29.55 -169.99 -5.02 16.57 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.14 2.92 6.60 -3.61 -0.02 2.89 16 26 C -0.11 -1.83 4.01 -88.60 -0.36 -2.18 16 27 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 28 C 0.12 1.94 6.23 -3.58 -0.02 1.92 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.56 7.88 -51.93 -0.41 0.15 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.10 1.05 8.03 -51.93 -0.42 0.63 16 38 H 0.08 1.58 7.75 -51.93 -0.40 1.18 16 39 H 0.06 0.93 7.16 -51.93 -0.37 0.56 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.10 2.49 5.98 -51.93 -0.31 2.18 16 42 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 43 H 0.03 0.53 7.29 -51.93 -0.38 0.15 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 46 H 0.07 1.12 7.43 -51.93 -0.39 0.73 16 LS Contribution 361.22 15.07 5.44 5.44 Total: -1.00 -30.19 361.22 -10.43 -40.62 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -8.06 Total: 0.38 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -2.29 Total: -1.12 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: -0.59 Total: -51.20 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.19 -10.43 -40.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049043885.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.151 kcal (2) G-P(sol) polarization free energy of solvation -30.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.56 seconds