Wall clock time and date at job start Tue Mar 31 2020 08:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46994 * 2 1 4 4 C 1.52996 * 109.47124 * 179.97438 * 3 2 1 5 5 H 1.09003 * 115.56336 * 29.31178 * 4 3 2 6 6 C 1.53074 * 117.49358 * 243.60207 * 4 3 2 7 7 C 1.52997 * 117.49761 * 174.99836 * 4 3 2 8 8 H 1.09000 * 117.50253 * 359.97438 * 7 4 3 9 9 C 1.50703 * 117.49689 * 214.97866 * 7 4 3 10 10 O 1.21284 * 120.00317 * 0.09205 * 9 7 4 11 11 N 1.34779 * 120.00101 * 180.08535 * 9 7 4 12 12 C 1.46776 * 125.33520 * 0.02562 * 11 9 7 13 13 C 1.53971 * 106.62673 * 198.51561 * 12 11 9 14 14 H 1.09002 * 113.01755 * 94.27673 * 13 12 11 15 15 C 1.53926 * 109.91794 * 221.55636 * 13 12 11 16 16 N 1.47621 * 106.28305 * 80.85137 * 15 13 12 17 17 C 1.36936 * 125.43814 * 198.68628 * 16 15 13 18 18 H 1.08002 * 119.99503 * 180.83715 * 17 16 15 19 19 C 1.38811 * 120.00226 * 0.83460 * 17 16 15 20 20 N 1.31614 * 120.00009 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00001 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47135 * 90.00303 * 21 19 17 23 23 H 1.48498 * 109.47299 * 210.00536 * 21 19 17 24 24 H 1.48509 * 109.46927 * 330.00459 * 21 19 17 25 25 C 1.46632 * 109.22512 * 19.40863 * 16 15 13 26 26 C 1.53696 * 108.01255 * 358.47815 * 25 16 15 27 27 H 1.09004 * 113.05609 * 106.18489 * 26 25 16 28 28 C 1.46663 * 125.34360 * 179.97438 * 11 9 7 29 29 H 1.08995 * 109.47452 * 300.00045 * 1 2 3 30 30 H 1.08998 * 109.46742 * 60.00525 * 1 2 3 31 31 H 1.09000 * 109.47164 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47118 * 239.99557 * 2 1 3 33 33 H 1.08998 * 109.46742 * 119.99475 * 2 1 3 34 34 H 1.09004 * 109.46944 * 59.99523 * 3 2 1 35 35 H 1.09006 * 109.46941 * 299.99980 * 3 2 1 36 36 H 1.08998 * 117.51603 * 145.04257 * 6 4 3 37 37 H 1.09001 * 117.51422 * 359.97438 * 6 4 3 38 38 H 1.09003 * 110.03209 * 79.22309 * 12 11 9 39 39 H 1.08996 * 110.02884 * 317.80292 * 12 11 9 40 40 H 1.08995 * 110.01213 * 201.20095 * 15 13 12 41 41 H 1.08999 * 110.00929 * 322.56835 * 15 13 12 42 42 H 0.97005 * 120.00075 * 179.97438 * 20 19 17 43 43 H 1.08994 * 109.76271 * 238.83852 * 25 16 15 44 44 H 1.09002 * 109.76158 * 118.11564 * 25 16 15 45 45 H 1.09013 * 109.76822 * 59.83729 * 28 11 9 46 46 H 1.09001 * 109.79079 * 299.09448 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 4.0405 0.5851 -0.4804 6 6 4.2761 2.0465 1.2171 7 6 4.2764 2.7945 -0.1176 8 1 3.6512 3.6839 -0.1963 9 6 5.5695 2.8387 -0.8902 10 8 6.0115 1.8265 -1.3913 11 7 6.2350 4.0030 -1.0244 12 6 5.8092 5.2930 -0.4686 13 6 6.5776 6.3808 -1.2413 14 1 6.0166 6.7801 -2.0863 15 6 7.0600 7.4726 -0.2694 16 7 8.2892 6.9519 0.3609 17 6 8.8426 7.4158 1.5244 18 1 9.7551 6.9773 1.9007 19 6 8.2309 8.4496 2.2201 20 7 7.1187 8.9836 1.7618 21 14 8.9856 9.0818 3.8077 22 1 9.9344 10.1822 3.5008 23 1 7.9114 9.5886 4.6990 24 1 9.7109 7.9772 4.4852 25 6 8.8343 5.8700 -0.4651 26 6 7.8909 5.6633 -1.6607 27 1 8.2986 6.0443 -2.5970 28 6 7.4984 4.1796 -1.7479 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 5.2112 1.5864 1.5363 37 1 3.6507 2.4440 2.0165 38 1 6.0571 5.3428 0.5917 39 1 4.7362 5.4237 -0.6080 40 1 7.2594 8.3954 -0.8142 41 1 6.3066 7.6478 0.4985 42 1 6.6911 9.7058 2.2482 43 1 8.8930 4.9528 0.1209 44 1 9.8272 6.1434 -0.8222 45 1 7.3687 3.8936 -2.7918 46 1 8.2743 3.5652 -1.2911 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049043885.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:32:15 Heat of formation + Delta-G solvation = -12.229639 kcal Electronic energy + Delta-G solvation = -23852.482511 eV Core-core repulsion = 20549.203417 eV Total energy + Delta-G solvation = -3303.279094 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.63528 -40.08387 -38.07164 -36.54133 -34.74040 -34.08415 -31.59522 -31.54243 -28.50342 -27.42281 -27.06988 -25.50322 -23.60744 -22.72290 -21.82722 -21.47044 -20.81545 -20.02038 -18.93808 -18.25044 -17.24883 -16.81728 -16.59614 -16.05420 -15.98937 -15.54480 -15.32165 -14.77740 -14.51099 -14.26319 -14.17878 -13.87147 -13.59972 -13.45520 -13.23975 -13.15601 -13.06978 -12.89490 -12.74698 -12.68096 -12.20073 -12.00914 -11.94144 -11.88308 -11.75978 -11.68666 -11.52780 -11.39049 -11.18408 -11.02789 -10.80873 -10.68685 -9.67768 -8.86568 -7.79289 -5.19604 1.41745 1.48127 1.48470 1.57217 1.93096 2.50112 2.83385 3.26016 3.33114 3.54227 3.62152 3.74315 3.78082 3.84976 3.92629 4.09914 4.20299 4.27048 4.28436 4.31489 4.38586 4.46470 4.59532 4.63895 4.74943 4.81813 4.84396 4.88034 4.90719 4.94402 4.97721 5.02299 5.06380 5.17106 5.21437 5.24386 5.32210 5.37518 5.42364 5.48413 5.53296 5.60821 5.83400 6.30020 6.47246 7.07396 7.13095 7.79574 8.41785 9.24857 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.018556 B = 0.003569 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.555681 B = 7843.130013 C = 8685.885196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.085 4.085 4 C -0.108 4.108 5 H 0.098 0.902 6 C -0.143 4.143 7 C -0.196 4.196 8 H 0.140 0.860 9 C 0.551 3.449 10 O -0.587 6.587 11 N -0.607 5.607 12 C 0.124 3.876 13 C -0.111 4.111 14 H 0.118 0.882 15 C 0.176 3.824 16 N -0.621 5.621 17 C -0.241 4.241 18 H 0.074 0.926 19 C -0.059 4.059 20 N -0.943 5.943 21 Si 0.974 3.026 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.275 1.275 25 C 0.140 3.860 26 C -0.095 4.095 27 H 0.122 0.878 28 C 0.121 3.879 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.126 0.874 38 H 0.049 0.951 39 H 0.094 0.906 40 H -0.004 1.004 41 H 0.071 0.929 42 H 0.248 0.752 43 H 0.015 0.985 44 H 0.024 0.976 45 H 0.079 0.921 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.399 -12.405 -5.359 17.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.122 4.122 4 C -0.126 4.126 5 H 0.117 0.883 6 C -0.180 4.180 7 C -0.217 4.217 8 H 0.158 0.842 9 C 0.342 3.658 10 O -0.468 6.468 11 N -0.338 5.338 12 C 0.001 3.999 13 C -0.130 4.130 14 H 0.136 0.864 15 C 0.051 3.949 16 N -0.348 5.348 17 C -0.370 4.370 18 H 0.092 0.908 19 C -0.252 4.252 20 N -0.592 5.592 21 Si 0.803 3.197 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.200 1.200 25 C 0.014 3.986 26 C -0.114 4.114 27 H 0.140 0.860 28 C -0.002 4.002 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.144 0.856 38 H 0.068 0.932 39 H 0.112 0.888 40 H 0.014 0.986 41 H 0.089 0.911 42 H 0.058 0.942 43 H 0.033 0.967 44 H 0.042 0.958 45 H 0.097 0.903 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.228 -12.863 -5.447 17.921 hybrid contribution 0.981 0.767 0.879 1.524 sum -10.247 -12.096 -4.568 16.498 Atomic orbital electron populations 1.21766 0.94934 1.02050 1.02123 1.21492 0.96414 0.95955 1.02073 1.21251 0.89970 0.98008 1.02991 1.22463 0.95930 0.93830 1.00403 0.88338 1.23181 1.02878 1.01365 0.90587 1.22321 0.96400 1.00227 1.02730 0.84233 1.19866 0.85321 0.81062 0.79591 1.90632 1.70381 1.34456 1.51371 1.48317 1.23737 1.08683 1.53111 1.21947 0.99818 0.80894 0.97217 1.23134 0.95486 0.95642 0.98782 0.86387 1.21322 0.89097 0.91217 0.93291 1.44705 1.27472 1.38691 1.23891 1.19351 1.05873 1.13664 0.98097 0.90790 1.25505 0.98349 0.99157 1.02175 1.70047 1.20202 1.28385 1.40604 0.85142 0.77075 0.78072 0.79395 1.21517 1.21702 1.19972 1.21327 0.95637 0.90666 0.90952 1.22743 0.95933 0.93574 0.99160 0.85967 1.21777 0.85535 0.95841 0.97013 0.92295 0.92573 0.92276 0.92412 0.91809 0.90378 0.91057 0.89786 0.85595 0.93218 0.88778 0.98550 0.91148 0.94190 0.96702 0.95819 0.90296 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 71.98 0.71 -1.11 16 2 C -0.12 -1.77 5.89 30.60 0.18 -1.59 16 3 C -0.08 -1.35 5.50 30.59 0.17 -1.19 16 4 C -0.11 -2.32 5.25 -10.77 -0.06 -2.37 16 5 H 0.10 2.50 7.60 -2.39 -0.02 2.48 16 6 C -0.14 -3.18 9.88 30.62 0.30 -2.87 16 7 C -0.20 -4.88 5.24 -11.54 -0.06 -4.94 16 8 H 0.14 2.96 7.15 -2.39 -0.02 2.94 16 9 C 0.55 17.87 7.62 87.66 0.67 18.54 16 10 O -0.59 -22.61 16.57 -3.04 -0.05 -22.66 16 11 N -0.61 -19.35 3.31 -817.38 -2.71 -22.06 16 12 C 0.12 3.93 5.87 86.65 0.51 4.44 16 13 C -0.11 -3.67 4.12 -9.32 -0.04 -3.70 16 14 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 15 C 0.18 7.99 4.94 86.48 0.43 8.42 16 16 N -0.62 -30.85 3.39 -695.66 -2.36 -33.21 16 17 C -0.24 -13.26 10.25 84.03 0.86 -12.40 16 18 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 19 C -0.06 -3.23 5.49 84.86 0.47 -2.76 16 20 N -0.94 -53.67 10.15 21.65 0.22 -53.45 16 21 Si 0.97 44.77 29.55 68.60 2.03 46.80 16 22 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 23 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 25 C 0.14 5.66 6.60 86.59 0.57 6.24 16 26 C -0.09 -3.01 4.01 -9.49 -0.04 -3.05 16 27 H 0.12 3.26 8.14 -2.39 -0.02 3.24 16 28 C 0.12 3.72 6.23 86.59 0.54 4.26 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.08 1.09 7.88 -2.39 -0.02 1.07 16 35 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.13 2.24 8.03 -2.39 -0.02 2.22 16 38 H 0.05 1.92 7.75 -2.39 -0.02 1.90 16 39 H 0.09 2.45 7.16 -2.39 -0.02 2.43 16 40 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 41 H 0.07 3.62 5.98 -2.39 -0.01 3.60 16 42 H 0.25 13.76 8.31 -92.70 -0.77 12.98 16 43 H 0.02 0.64 7.29 -2.39 -0.02 0.62 16 44 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 46 H 0.06 1.87 7.43 -2.39 -0.02 1.85 16 Total: -1.00 -66.12 361.22 3.28 -62.84 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.94 Total: 15.84 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 5.21 Total: 5.90 kcal Atomic # 7 Polarization: -103.87 SS G_CDS: -4.85 Total: -108.72 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.05 Total: -22.66 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -66.12 3.28 -62.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049043885.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.607 kcal (2) G-P(sol) polarization free energy of solvation -66.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds