Wall clock time and date at job start Tue Mar 31 2020 06:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47554 * 2 1 4 4 C 1.53007 * 109.46822 * 120.00281 * 2 1 3 5 5 C 1.50696 * 115.54715 * 297.66694 * 4 2 1 6 6 O 1.21283 * 120.00385 * 272.60878 * 5 4 2 7 7 N 1.34781 * 119.99564 * 92.61849 * 5 4 2 8 8 C 1.46654 * 125.33131 * 174.48740 * 7 5 4 9 9 C 1.53672 * 107.97197 * 180.70750 * 8 7 5 10 10 H 1.09004 * 112.78101 * 139.88685 * 9 8 7 11 11 C 1.53979 * 109.29955 * 266.21047 * 9 8 7 12 12 N 1.46757 * 106.67768 * 138.83136 * 11 9 8 13 13 C 1.36942 * 125.33418 * 161.51341 * 12 11 9 14 14 H 1.08008 * 119.99865 * 0.02562 * 13 12 11 15 15 C 1.38809 * 120.00117 * 180.02562 * 13 12 11 16 16 N 1.31621 * 119.99976 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99960 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47194 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47218 * 119.99950 * 17 15 13 20 20 H 1.48506 * 109.46764 * 239.99606 * 17 15 13 21 21 C 1.46657 * 109.33380 * 341.55177 * 12 11 9 22 22 C 1.54835 * 108.22750 * 1.22920 * 21 12 11 23 23 H 1.08997 * 113.50010 * 139.07425 * 22 21 12 24 24 C 1.46755 * 125.33606 * 354.17961 * 7 5 4 25 25 C 1.53000 * 117.51778 * 83.37097 * 4 2 1 26 26 C 1.52999 * 117.49718 * 152.00161 * 4 2 1 27 27 H 1.08996 * 109.47672 * 184.17392 * 1 2 3 28 28 H 1.09000 * 109.46840 * 304.18042 * 1 2 3 29 29 H 1.09004 * 109.47146 * 64.17313 * 1 2 3 30 30 H 1.09005 * 109.46873 * 240.00087 * 2 1 3 31 31 H 1.08994 * 109.47534 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47111 * 300.00282 * 3 2 1 33 33 H 1.09005 * 109.46959 * 60.00140 * 3 2 1 34 34 H 1.09005 * 109.77272 * 300.33761 * 8 7 5 35 35 H 1.09000 * 109.76805 * 61.06119 * 8 7 5 36 36 H 1.09006 * 110.01879 * 258.13814 * 11 9 8 37 37 H 1.09000 * 110.01981 * 19.52722 * 11 9 8 38 38 H 0.96998 * 120.00277 * 180.02562 * 16 15 13 39 39 H 1.08997 * 109.76969 * 120.33829 * 21 12 11 40 40 H 1.08996 * 109.76651 * 241.06476 * 21 12 11 41 41 H 1.08998 * 110.01573 * 280.85764 * 24 7 5 42 42 H 1.09001 * 110.01727 * 42.24340 * 24 7 5 43 43 H 1.08997 * 117.49793 * 214.96529 * 25 4 2 44 44 H 1.09001 * 117.49731 * 359.97438 * 25 4 2 45 45 H 1.09000 * 117.49655 * 359.97172 * 26 4 2 46 46 H 1.08994 * 117.50350 * 144.99397 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 1.2493 5 6 1.6613 -0.0901 2.5643 6 8 2.3617 0.7752 3.0456 7 7 0.5444 -0.4875 3.2056 8 6 0.1264 -0.0389 4.5378 9 6 -1.1889 -0.7526 4.8873 10 1 -1.2326 -1.0709 5.9289 11 6 -2.3758 0.1429 4.4868 12 7 -3.3858 -0.7385 3.8896 13 6 -4.7102 -0.4301 3.7280 14 1 -5.0846 0.5297 4.0522 15 6 -5.5715 -1.3510 3.1475 16 7 -5.1151 -2.5204 2.7518 17 14 -7.3779 -0.9300 2.9264 18 1 -7.6354 0.4361 3.4488 19 1 -7.7254 -0.9823 1.4836 20 1 -8.2092 -1.9093 3.6716 21 6 -2.7547 -2.0018 3.4937 22 6 -1.2583 -1.9395 3.8864 23 1 -0.8795 -2.8720 4.3047 24 6 -0.4471 -1.4317 2.6775 25 6 2.1279 -2.2480 1.1977 26 6 3.4052 -1.4064 1.1616 27 1 -0.3634 -1.0249 0.0748 28 1 -0.3633 0.5774 0.8502 29 1 -0.3634 0.4477 -0.9250 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 0.8914 -0.2963 5.2704 35 1 -0.0296 1.0398 4.5315 36 1 -2.7853 0.6361 5.3685 37 1 -2.0528 0.8872 3.7589 38 1 -5.7168 -3.1638 2.3458 39 1 -3.2289 -2.8311 4.0185 40 1 -2.8537 -2.1419 2.4174 41 1 -1.1039 -0.9261 1.9697 42 1 0.0557 -2.2667 2.1896 43 1 1.9119 -2.7958 2.1149 44 1 1.8220 -2.7387 0.2737 45 1 3.9398 -1.3436 0.2138 46 1 4.0295 -1.4007 2.0550 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049046890.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:54 Heat of formation + Delta-G solvation = 13.358484 kcal Electronic energy + Delta-G solvation = -25228.620391 eV Core-core repulsion = 21926.450881 eV Total energy + Delta-G solvation = -3302.169510 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.65521 -38.76319 -36.93541 -34.96292 -33.45490 -32.23240 -30.11693 -29.76834 -27.15081 -25.88180 -25.45729 -24.24780 -22.55648 -22.47703 -21.15672 -20.22941 -19.33875 -18.21768 -16.95401 -16.36919 -16.25368 -15.61244 -15.02539 -14.72106 -14.21278 -14.03489 -13.84885 -13.55295 -13.20388 -13.10101 -12.88744 -12.69862 -12.18588 -12.03671 -11.87469 -11.72756 -11.63815 -11.48514 -11.36478 -11.17123 -11.00161 -10.88095 -10.83711 -10.41865 -10.27142 -10.14272 -10.07324 -9.95731 -9.89960 -9.70336 -9.43238 -8.64260 -8.34004 -6.86792 -5.76424 -3.09481 2.76723 3.12020 3.37189 3.43527 3.45401 3.62807 4.40817 4.46199 4.57569 4.72351 4.77231 4.90785 5.02033 5.23615 5.25549 5.29828 5.38752 5.48596 5.49693 5.53204 5.62773 5.70580 5.72393 5.75618 5.78468 5.88204 5.91773 5.94301 5.97827 5.98787 6.10562 6.15010 6.23624 6.32423 6.34657 6.40715 6.52650 6.61986 6.66731 6.84014 7.49819 7.52578 7.74800 7.78303 8.22199 8.35846 9.18867 9.78889 10.42827 11.35348 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.021478 B = 0.004597 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.338801 B = 6089.732179 C = 6459.364546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.047 4.047 3 C -0.145 4.145 4 C -0.142 4.142 5 C 0.566 3.434 6 O -0.546 6.546 7 N -0.604 5.604 8 C 0.118 3.882 9 C -0.109 4.109 10 H 0.095 0.905 11 C 0.144 3.856 12 N -0.602 5.602 13 C -0.227 4.227 14 H 0.079 0.921 15 C -0.007 4.007 16 N -0.923 5.923 17 Si 0.911 3.089 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.290 1.290 21 C 0.190 3.810 22 C -0.126 4.126 23 H 0.088 0.912 24 C 0.103 3.897 25 C -0.166 4.166 26 C -0.147 4.147 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.036 0.964 37 H 0.018 0.982 38 H 0.252 0.748 39 H 0.047 0.953 40 H 0.050 0.950 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.100 0.900 44 H 0.104 0.896 45 H 0.102 0.898 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.168 0.210 -3.588 14.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.066 4.066 3 C -0.202 4.202 4 C -0.145 4.145 5 C 0.354 3.646 6 O -0.424 6.424 7 N -0.336 5.336 8 C -0.005 4.005 9 C -0.129 4.129 10 H 0.113 0.887 11 C 0.017 3.983 12 N -0.328 5.328 13 C -0.355 4.355 14 H 0.096 0.904 15 C -0.203 4.203 16 N -0.571 5.571 17 Si 0.742 3.258 18 H -0.205 1.205 19 H -0.217 1.217 20 H -0.217 1.217 21 C 0.064 3.936 22 C -0.146 4.146 23 H 0.106 0.894 24 C -0.020 4.020 25 C -0.203 4.203 26 C -0.185 4.185 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.036 0.964 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.118 0.882 44 H 0.123 0.877 45 H 0.120 0.880 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 14.397 0.615 -3.450 14.817 hybrid contribution -1.053 0.103 -0.085 1.062 sum 13.344 0.718 -3.535 13.823 Atomic orbital electron populations 1.22032 0.94068 1.02663 1.02296 1.20588 0.96189 0.96038 0.93736 1.21796 1.01114 0.95355 1.01944 1.21416 1.02967 0.95344 0.94738 1.19073 0.79366 0.81791 0.84348 1.90663 1.52328 1.31537 1.67862 1.48293 1.22102 1.45021 1.18226 1.21742 0.95819 0.99216 0.83693 1.22856 0.93821 0.96400 0.99796 0.88713 1.21317 0.88534 0.92660 0.95742 1.44213 1.04604 1.13315 1.70711 1.19105 0.82449 1.00028 1.33939 0.90357 1.24775 0.98261 0.96293 1.00976 1.69951 1.33653 1.06881 1.46585 0.86050 0.84829 0.77490 0.77442 1.20517 1.21740 1.21744 1.21162 0.84042 0.89200 0.99150 1.23460 0.99693 0.97258 0.94143 0.89367 1.22568 0.90003 0.92038 0.97348 1.23172 1.01349 0.91741 1.04054 1.22995 0.90040 1.01765 1.03677 0.91779 0.92173 0.92319 0.90424 0.92550 0.92640 0.92267 0.92150 0.91466 0.94623 0.96413 0.93761 0.93467 0.93233 0.90048 0.90924 0.88152 0.87747 0.87997 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 7.43 37.16 0.28 -1.70 16 2 C -0.05 -0.55 2.74 -90.62 -0.25 -0.79 16 3 C -0.14 -1.75 8.91 37.15 0.33 -1.42 16 4 C -0.14 -1.78 0.96 -155.66 -0.15 -1.93 16 5 C 0.57 9.01 5.56 -10.99 -0.06 8.95 16 6 O -0.55 -10.34 16.86 5.55 0.09 -10.25 16 7 N -0.60 -9.48 3.27 -172.22 -0.56 -10.05 16 8 C 0.12 1.85 6.20 -3.61 -0.02 1.83 16 9 C -0.11 -1.81 4.05 -88.48 -0.36 -2.17 16 10 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 11 C 0.14 2.89 6.45 -3.39 -0.02 2.87 16 12 N -0.60 -14.70 3.38 -171.16 -0.58 -15.27 16 13 C -0.23 -6.14 10.25 -15.06 -0.15 -6.30 16 14 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 15 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 16 N -0.92 -26.03 10.25 55.49 0.57 -25.46 16 17 Si 0.91 21.63 29.55 -169.99 -5.02 16.60 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 21 C 0.19 4.27 4.73 -2.99 -0.01 4.25 16 22 C -0.13 -2.15 4.21 -87.75 -0.37 -2.52 16 23 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 24 C 0.10 1.60 4.49 -3.29 -0.01 1.58 16 25 C -0.17 -1.74 8.12 -26.73 -0.22 -1.96 16 26 C -0.15 -1.56 9.94 -26.73 -0.27 -1.83 16 27 H 0.06 0.82 7.08 -51.93 -0.37 0.45 16 28 H 0.06 0.91 6.80 -51.93 -0.35 0.56 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.77 8.11 -51.93 -0.42 0.35 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.86 7.15 -51.93 -0.37 0.49 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.09 7.61 -51.93 -0.40 0.70 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.02 0.38 7.55 -51.93 -0.39 -0.02 16 38 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.05 1.20 7.36 -51.93 -0.38 0.81 16 40 H 0.05 1.23 6.94 -51.93 -0.36 0.87 16 41 H 0.08 1.43 5.20 -51.93 -0.27 1.16 16 42 H 0.07 0.99 5.22 -51.93 -0.27 0.72 16 43 H 0.10 1.08 7.30 -51.93 -0.38 0.70 16 44 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 348.04 15.07 5.24 5.24 Total: -1.00 -30.34 348.04 -9.38 -39.72 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -7.74 Total: 0.87 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -1.39 Total: -1.41 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: -0.57 Total: -50.78 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.34 -9.38 -39.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049046890.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.076 kcal (2) G-P(sol) polarization free energy of solvation -30.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds