Wall clock time and date at job start Tue Mar 31 2020 08:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47194 * 2 1 4 4 C 1.52997 * 109.47361 * 120.00184 * 2 1 3 5 5 H 1.08996 * 115.54961 * 279.99133 * 4 2 1 6 6 C 1.53006 * 117.49620 * 134.27818 * 4 2 1 7 7 C 1.53001 * 59.99944 * 252.51056 * 6 4 2 8 8 H 1.08997 * 117.52329 * 252.51781 * 7 6 4 9 9 C 1.50701 * 117.49611 * 107.49126 * 7 6 4 10 10 O 1.21279 * 120.00127 * 322.11026 * 9 7 6 11 11 N 1.34775 * 120.00336 * 142.10941 * 9 7 6 12 12 C 1.46664 * 125.34496 * 180.02562 * 11 9 7 13 13 C 1.53721 * 107.94882 * 180.54679 * 12 11 9 14 14 H 1.08993 * 112.56354 * 139.71745 * 13 12 11 15 15 C 1.53696 * 109.34140 * 265.60340 * 13 12 11 16 16 N 1.47883 * 107.36825 * 127.23972 * 15 13 12 17 17 C 1.36931 * 125.18335 * 181.07477 * 16 15 13 18 18 H 1.08003 * 120.00266 * 180.48060 * 17 16 15 19 19 C 1.38817 * 119.99636 * 0.48172 * 17 16 15 20 20 N 1.31619 * 120.00311 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99807 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47393 * 90.00042 * 21 19 17 23 23 H 1.48506 * 109.46939 * 209.99911 * 21 19 17 24 24 H 1.48499 * 109.46983 * 329.99849 * 21 19 17 25 25 C 1.46752 * 109.48877 * 1.49173 * 16 15 13 26 26 C 1.53933 * 106.71667 * 341.24375 * 25 16 15 27 27 H 1.09001 * 113.00685 * 150.83909 * 26 25 16 28 28 C 1.46784 * 125.33321 * 359.69591 * 11 9 7 29 29 H 1.08994 * 109.47560 * 170.32629 * 1 2 3 30 30 H 1.09010 * 109.46932 * 290.32266 * 1 2 3 31 31 H 1.09001 * 109.47642 * 50.32079 * 1 2 3 32 32 H 1.09001 * 109.46618 * 240.00435 * 2 1 3 33 33 H 1.09002 * 109.46936 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.46973 * 300.00254 * 3 2 1 35 35 H 1.08997 * 109.46604 * 60.00320 * 3 2 1 36 36 H 1.08993 * 117.49853 * 0.02562 * 6 4 2 37 37 H 1.09000 * 117.49556 * 145.02178 * 6 4 2 38 38 H 1.09005 * 109.77226 * 300.16806 * 12 11 9 39 39 H 1.08999 * 109.77212 * 60.92409 * 12 11 9 40 40 H 1.08995 * 109.76199 * 247.19829 * 15 13 12 41 41 H 1.09000 * 109.76162 * 7.91207 * 15 13 12 42 42 H 0.96996 * 120.00097 * 180.02562 * 20 19 17 43 43 H 1.08991 * 110.00621 * 221.92550 * 25 16 15 44 44 H 1.09000 * 110.00418 * 100.55459 * 25 16 15 45 45 H 1.09000 * 110.02845 * 280.76994 * 28 11 9 46 46 H 1.08997 * 110.03050 * 42.19448 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 2.0359 -0.1326 2.1665 6 6 3.1689 -1.7379 1.0665 7 6 1.7481 -2.2184 1.3692 8 1 1.5520 -2.6147 2.3654 9 6 0.9803 -2.8697 0.2479 10 8 1.0870 -2.4490 -0.8846 11 7 0.1749 -3.9196 0.5035 12 6 -0.6229 -4.6398 -0.4945 13 6 -1.3984 -5.7511 0.2311 14 1 -2.4180 -5.8594 -0.1386 15 6 -0.6006 -7.0625 0.1538 16 7 -0.4609 -7.5762 1.5335 17 6 0.2071 -8.7183 1.8863 18 1 0.2504 -9.0204 2.9223 19 6 0.8285 -9.4878 0.9123 20 7 0.7762 -9.1193 -0.3502 21 14 1.7392 -11.0462 1.3934 22 1 0.8034 -12.1985 1.3540 23 1 2.8546 -11.2816 0.4417 24 1 2.2835 -10.8974 2.7670 25 6 -1.1566 -6.6785 2.4629 26 6 -1.3431 -5.3386 1.7285 27 1 -2.2268 -4.7919 2.0573 28 6 -0.0362 -4.5260 1.8235 29 1 -0.3634 -1.0130 -0.1727 30 1 -0.3633 0.3569 0.9638 31 1 -0.3634 0.6561 -0.7909 32 1 1.8932 -0.5138 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9562 0.8900 36 1 3.5483 -1.8924 0.0565 37 1 3.9078 -1.8180 1.8638 38 1 -1.3222 -3.9537 -0.9725 39 1 0.0345 -5.0787 -1.2451 40 1 -1.1344 -7.7826 -0.4663 41 1 0.3848 -6.8699 -0.2704 42 1 1.2101 -9.6572 -1.0308 43 1 -0.5552 -6.5317 3.3600 44 1 -2.1276 -7.0965 2.7286 45 1 0.7981 -5.1826 2.0704 46 1 -0.1361 -3.7479 2.5801 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049141677.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:32:38 Heat of formation + Delta-G solvation = 12.833196 kcal Electronic energy + Delta-G solvation = -24598.538952 eV Core-core repulsion = 21296.346664 eV Total energy + Delta-G solvation = -3302.192288 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.44965 -38.96614 -36.72888 -34.81496 -33.41025 -32.22660 -30.41378 -29.38471 -27.14915 -26.04205 -25.45595 -24.11553 -22.96697 -22.16985 -20.25308 -20.10967 -19.27470 -18.53162 -17.16413 -16.71917 -15.96347 -15.39445 -14.93226 -14.76249 -14.39492 -13.98941 -13.73435 -13.55404 -13.25710 -13.09800 -12.73671 -12.41003 -12.29045 -12.16258 -11.98834 -11.81555 -11.47207 -11.43884 -11.25345 -11.15834 -10.90309 -10.83819 -10.74873 -10.39832 -10.19816 -10.11476 -10.08682 -9.99148 -9.84613 -9.63341 -9.37384 -8.62645 -8.24451 -6.86139 -5.73933 -3.07759 2.65341 3.25222 3.38621 3.43607 3.45822 3.93105 4.47560 4.49901 4.64763 4.81890 4.87042 4.92840 5.07437 5.16524 5.25005 5.30000 5.38647 5.49556 5.55680 5.59326 5.65050 5.65092 5.69503 5.72971 5.85906 5.86971 5.89482 5.96172 5.98958 6.02088 6.18636 6.19712 6.29083 6.39606 6.40094 6.55250 6.55684 6.58428 6.68195 6.80701 7.54209 7.55378 7.79397 7.85317 8.22606 8.46155 9.18212 9.79899 10.43755 11.37645 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.024843 B = 0.003880 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.803465 B = 7215.048294 C = 7555.018992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.071 4.071 3 C -0.143 4.143 4 C -0.111 4.111 5 H 0.108 0.892 6 C -0.144 4.144 7 C -0.188 4.188 8 H 0.118 0.882 9 C 0.559 3.441 10 O -0.544 6.544 11 N -0.604 5.604 12 C 0.122 3.878 13 C -0.124 4.124 14 H 0.089 0.911 15 C 0.186 3.814 16 N -0.604 5.604 17 C -0.231 4.231 18 H 0.078 0.922 19 C -0.007 4.007 20 N -0.921 5.921 21 Si 0.912 3.088 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.147 3.853 26 C -0.111 4.111 27 H 0.089 0.911 28 C 0.113 3.887 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.049 0.951 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.044 0.956 41 H 0.054 0.946 42 H 0.253 0.747 43 H 0.038 0.962 44 H 0.019 0.981 45 H 0.079 0.921 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.841 17.066 4.060 17.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.090 4.090 3 C -0.200 4.200 4 C -0.130 4.130 5 H 0.126 0.874 6 C -0.182 4.182 7 C -0.209 4.209 8 H 0.136 0.864 9 C 0.348 3.652 10 O -0.423 6.423 11 N -0.337 5.337 12 C 0.000 4.000 13 C -0.144 4.144 14 H 0.107 0.893 15 C 0.061 3.939 16 N -0.331 5.331 17 C -0.359 4.359 18 H 0.096 0.904 19 C -0.203 4.203 20 N -0.568 5.568 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.020 3.980 26 C -0.130 4.130 27 H 0.107 0.893 28 C -0.010 4.010 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.113 0.887 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.037 0.963 45 H 0.097 0.903 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.607 17.169 3.332 17.500 hybrid contribution 0.393 -1.089 0.389 1.221 sum -0.214 16.080 3.721 16.506 Atomic orbital electron populations 1.21822 0.95215 1.02416 1.00473 1.20810 0.95856 0.95035 0.97267 1.21820 1.00803 0.96088 1.01300 1.22403 1.01477 0.88895 1.00245 0.87369 1.23066 0.89718 1.01680 1.03713 1.22296 1.00611 0.98664 0.99374 0.86421 1.19104 0.78502 0.78733 0.88838 1.90632 1.65285 1.63359 1.23059 1.48160 1.44577 1.30738 1.10176 1.21800 0.93809 0.93037 0.91390 1.23150 0.99763 0.97396 0.94083 0.89281 1.21337 0.97300 0.88428 0.86796 1.44516 1.61707 1.25290 1.01598 1.19034 1.25669 0.98007 0.93173 0.90420 1.24797 1.00847 0.99227 0.95436 1.69946 1.48257 1.39250 0.99344 0.86126 0.79196 0.83128 0.77336 1.21612 1.21693 1.20706 1.21140 0.95623 0.88111 0.93136 1.22934 0.96252 0.97024 0.96834 0.89256 1.22129 0.98629 0.96044 0.84165 0.92018 0.93660 0.93165 0.88710 0.92836 0.92825 0.93139 0.87855 0.88052 0.92468 0.90980 0.93757 0.92835 0.93701 0.94419 0.96336 0.90300 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.73 37.16 0.32 -1.42 16 2 C -0.07 -0.85 2.25 -90.62 -0.20 -1.05 16 3 C -0.14 -1.35 9.18 37.16 0.34 -1.01 16 4 C -0.11 -1.24 5.05 -90.62 -0.46 -1.69 16 5 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 6 C -0.14 -1.67 9.74 -26.73 -0.26 -1.93 16 7 C -0.19 -2.45 5.72 -91.77 -0.52 -2.97 16 8 H 0.12 1.37 6.69 -51.93 -0.35 1.02 16 9 C 0.56 9.16 5.95 -10.99 -0.07 9.10 16 10 O -0.54 -10.11 12.94 5.56 0.07 -10.04 16 11 N -0.60 -10.09 3.31 -172.15 -0.57 -10.66 16 12 C 0.12 2.13 6.24 -3.58 -0.02 2.10 16 13 C -0.12 -2.21 3.97 -88.60 -0.35 -2.57 16 14 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 15 C 0.19 4.35 4.83 -2.92 -0.01 4.33 16 16 N -0.60 -14.78 3.40 -170.92 -0.58 -15.36 16 17 C -0.23 -6.25 10.25 -15.06 -0.15 -6.41 16 18 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 19 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 20 N -0.92 -26.72 10.25 55.49 0.57 -26.15 16 21 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 25 C 0.15 2.82 6.37 -3.42 -0.02 2.80 16 26 C -0.11 -1.77 4.19 -88.24 -0.37 -2.14 16 27 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 28 C 0.11 1.76 5.63 -3.27 -0.02 1.74 16 29 H 0.06 0.91 5.36 -51.93 -0.28 0.63 16 30 H 0.04 0.49 8.12 -51.92 -0.42 0.07 16 31 H 0.05 0.58 8.12 -51.93 -0.42 0.15 16 32 H 0.09 1.37 6.19 -51.93 -0.32 1.05 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.10 1.33 8.06 -51.93 -0.42 0.91 16 37 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 1.40 7.42 -51.93 -0.39 1.02 16 40 H 0.04 1.16 7.51 -51.93 -0.39 0.77 16 41 H 0.05 1.42 6.48 -51.93 -0.34 1.09 16 42 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.04 0.70 7.94 -51.93 -0.41 0.28 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.08 1.42 7.72 -51.93 -0.40 1.02 16 46 H 0.06 0.81 7.21 -51.93 -0.37 0.44 16 LS Contribution 350.58 15.07 5.28 5.28 Total: -1.00 -30.46 350.58 -10.00 -40.46 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -7.86 Total: 1.00 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -1.89 Total: -1.40 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.58 Total: -52.17 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.07 Total: -10.04 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.46 -10.00 -40.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049141677.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.297 kcal (2) G-P(sol) polarization free energy of solvation -30.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds