Wall clock time and date at job start Tue Mar 31 2020 08:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47499 * 2 1 4 4 C 1.53006 * 109.47201 * 119.99723 * 2 1 3 5 5 H 1.08997 * 115.56278 * 274.30947 * 4 2 1 6 6 C 1.53072 * 117.49423 * 128.59957 * 4 2 1 7 7 C 1.53000 * 59.98572 * 252.51560 * 6 4 2 8 8 H 1.08992 * 117.49875 * 107.50071 * 7 6 4 9 9 C 1.50704 * 117.49804 * 252.50036 * 7 6 4 10 10 O 1.21280 * 120.00072 * 68.74778 * 9 7 6 11 11 N 1.34776 * 119.99775 * 248.74558 * 9 7 6 12 12 C 1.48700 * 125.14472 * 0.15160 * 11 9 7 13 13 C 1.53987 * 105.70237 * 198.43878 * 12 11 9 14 14 H 1.09002 * 112.80331 * 94.38575 * 13 12 11 15 15 C 1.53681 * 109.29603 * 220.69572 * 13 12 11 16 16 N 1.46654 * 107.97217 * 93.78377 * 15 13 12 17 17 C 1.36935 * 125.33289 * 179.29571 * 16 15 13 18 18 H 1.08001 * 120.00134 * 359.97438 * 17 16 15 19 19 C 1.38815 * 120.00117 * 180.02562 * 17 16 15 20 20 N 1.31619 * 119.99422 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00015 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47119 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47113 * 119.99534 * 21 19 17 24 24 H 1.48503 * 109.46840 * 239.99597 * 21 19 17 25 25 C 1.46754 * 109.32968 * 359.29627 * 16 15 13 26 26 C 1.53979 * 106.68065 * 18.44530 * 25 16 15 27 27 H 1.09002 * 112.24947 * 93.84730 * 26 25 16 28 28 C 1.46654 * 125.33337 * 180.02562 * 11 9 7 29 29 H 1.08994 * 109.47292 * 60.00062 * 1 2 3 30 30 H 1.08998 * 109.47080 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47350 * 300.00380 * 1 2 3 32 32 H 1.08998 * 109.47360 * 239.99190 * 2 1 3 33 33 H 1.08994 * 109.47600 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46866 * 299.99957 * 3 2 1 35 35 H 1.08998 * 109.47475 * 59.99261 * 3 2 1 36 36 H 1.09007 * 117.51098 * 145.03593 * 6 4 2 37 37 H 1.09000 * 117.49569 * 359.97438 * 6 4 2 38 38 H 1.08994 * 110.29121 * 79.55670 * 12 11 9 39 39 H 1.09003 * 110.69941 * 317.53276 * 12 11 9 40 40 H 1.08998 * 109.76582 * 213.41800 * 15 13 12 41 41 H 1.09003 * 109.76282 * 334.13842 * 15 13 12 42 42 H 0.97008 * 119.99559 * 180.02562 * 20 19 17 43 43 H 1.09007 * 110.01441 * 137.74926 * 25 16 15 44 44 H 1.09005 * 110.01711 * 259.13841 * 25 16 15 45 45 H 1.09003 * 109.76795 * 59.65947 * 28 11 9 46 46 H 1.09007 * 109.76759 * 298.92273 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 2.1271 -0.1061 2.1449 6 6 3.0742 -1.8322 1.0512 7 6 1.6357 -2.1852 1.4344 8 1 1.0061 -2.6344 0.6664 9 6 1.3883 -2.6663 2.8410 10 8 1.5104 -1.9009 3.7739 11 7 1.0315 -3.9469 3.0623 12 6 0.8525 -4.9800 2.0078 13 6 0.0143 -6.0970 2.6567 14 1 -1.0535 -5.9887 2.4664 15 6 0.5616 -7.4638 2.2160 16 7 1.5177 -7.9171 3.2315 17 6 2.2058 -9.1006 3.1990 18 1 2.0626 -9.7861 2.3768 19 6 3.0866 -9.4197 4.2234 20 7 3.2606 -8.5845 5.2256 21 14 4.0247 -11.0345 4.1794 22 1 3.6530 -11.7897 2.9560 23 1 5.4838 -10.7590 4.1673 24 1 3.6825 -11.8385 5.3801 25 6 1.6213 -6.9037 4.2879 26 6 0.3740 -6.0091 4.1660 27 1 -0.4358 -6.3391 4.8168 28 6 0.7626 -4.5374 4.3775 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.8418 -1.9478 1.8165 37 1 3.3905 -2.0491 0.0309 38 1 1.8199 -5.3730 1.6956 39 1 0.3226 -4.5667 1.1495 40 1 -0.2564 -8.1794 2.1342 41 1 1.0640 -7.3667 1.2536 42 1 3.8764 -8.8073 5.9413 43 1 1.6413 -7.3849 5.2658 44 1 2.5231 -6.3080 4.1462 45 1 -0.0573 -4.0051 4.8599 46 1 1.6567 -4.4778 4.9981 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049141679.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:32:51 Heat of formation + Delta-G solvation = 6.426815 kcal Electronic energy + Delta-G solvation = -24078.758468 eV Core-core repulsion = 20776.288378 eV Total energy + Delta-G solvation = -3302.470089 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 5.41 seconds Orbital eigenvalues (eV) -40.26879 -38.85944 -37.20598 -34.88971 -33.44635 -32.24939 -30.35432 -29.49248 -27.38335 -26.07615 -25.45842 -24.23337 -23.02209 -22.23602 -20.19714 -20.02439 -19.22931 -18.86672 -17.24139 -16.74288 -15.96170 -15.34789 -15.23958 -14.65211 -14.45968 -14.21072 -13.73895 -13.34667 -13.31136 -13.16719 -13.04094 -12.61033 -12.37897 -12.31257 -12.03594 -11.77934 -11.73538 -11.48019 -11.38966 -11.31401 -10.93810 -10.84810 -10.84016 -10.46299 -10.31791 -10.17817 -10.08929 -10.05216 -9.83998 -9.62810 -9.53169 -8.65859 -8.34316 -6.87354 -5.71173 -3.10715 2.67121 3.14387 3.37616 3.43066 3.45730 3.79551 4.35787 4.46022 4.61897 4.67535 4.78969 4.86894 4.94809 5.09777 5.11903 5.18109 5.28102 5.42230 5.46022 5.48023 5.56285 5.61360 5.63923 5.66346 5.69250 5.70872 5.84893 5.86297 5.90665 5.99859 6.00431 6.09393 6.20481 6.25717 6.27924 6.35035 6.52138 6.55375 6.64884 6.82335 7.48544 7.60678 7.75898 7.80588 8.29379 8.39405 9.18874 9.79589 10.42488 11.34982 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.026389 B = 0.003378 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.809150 B = 8287.863461 C = 8423.792171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.066 4.066 3 C -0.144 4.144 4 C -0.115 4.115 5 H 0.116 0.884 6 C -0.147 4.147 7 C -0.182 4.182 8 H 0.121 0.879 9 C 0.555 3.445 10 O -0.551 6.551 11 N -0.607 5.607 12 C 0.114 3.886 13 C -0.111 4.111 14 H 0.088 0.912 15 C 0.146 3.854 16 N -0.602 5.602 17 C -0.227 4.227 18 H 0.079 0.921 19 C -0.009 4.009 20 N -0.920 5.920 21 Si 0.914 3.086 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.170 3.830 26 C -0.121 4.121 27 H 0.092 0.908 28 C 0.123 3.877 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.252 0.748 43 H 0.093 0.907 44 H 0.019 0.981 45 H 0.059 0.941 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.813 14.654 -10.361 18.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.085 4.085 3 C -0.201 4.201 4 C -0.134 4.134 5 H 0.134 0.866 6 C -0.185 4.185 7 C -0.203 4.203 8 H 0.138 0.862 9 C 0.343 3.657 10 O -0.429 6.429 11 N -0.340 5.340 12 C -0.008 4.008 13 C -0.131 4.131 14 H 0.106 0.894 15 C 0.019 3.981 16 N -0.328 5.328 17 C -0.355 4.355 18 H 0.097 0.903 19 C -0.205 4.205 20 N -0.569 5.569 21 Si 0.745 3.255 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.217 1.217 25 C 0.045 3.955 26 C -0.141 4.141 27 H 0.110 0.890 28 C 0.000 4.000 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.063 0.937 43 H 0.111 0.889 44 H 0.037 0.963 45 H 0.077 0.923 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.570 15.001 -9.749 18.738 hybrid contribution 0.490 -1.032 -0.028 1.143 sum -5.079 13.969 -9.777 17.791 Atomic orbital electron populations 1.21819 0.94891 1.01943 1.01687 1.20736 0.95818 0.96090 0.95840 1.21796 1.01168 0.95398 1.01755 1.22480 1.01386 0.89360 1.00141 0.86564 1.23088 0.90712 1.01734 1.02921 1.22213 1.01387 1.00740 0.95915 0.86161 1.19259 0.76379 0.80352 0.89677 1.90666 1.52955 1.54381 1.44939 1.48668 1.67411 1.09048 1.08874 1.22496 1.00453 0.87734 0.90129 1.22806 0.98698 0.95309 0.96248 0.89420 1.21073 0.92659 0.91453 0.92903 1.44255 1.48062 1.19106 1.21406 1.19097 1.17165 0.93622 1.05596 0.90333 1.24810 0.99883 0.98686 0.97139 1.69887 1.39635 1.35536 1.11799 0.86010 0.79483 0.82744 0.77311 1.20507 1.21750 1.21718 1.21528 0.90097 0.88260 0.95649 1.23201 1.01629 0.93964 0.95321 0.88966 1.21684 1.00759 0.93079 0.84441 0.92745 0.92631 0.92462 0.91054 0.92488 0.92679 0.92491 0.88246 0.87873 0.90495 0.91335 0.95699 0.95730 0.93724 0.88866 0.96313 0.92284 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.03 37.15 0.34 -0.90 16 2 C -0.07 -0.58 3.07 -90.62 -0.28 -0.85 16 3 C -0.14 -1.11 9.18 37.16 0.34 -0.77 16 4 C -0.12 -1.28 4.67 -90.58 -0.42 -1.70 16 5 H 0.12 1.50 7.64 -51.93 -0.40 1.10 16 6 C -0.15 -1.65 9.88 -26.69 -0.26 -1.91 16 7 C -0.18 -2.27 4.72 -91.77 -0.43 -2.71 16 8 H 0.12 1.30 6.63 -51.93 -0.34 0.95 16 9 C 0.55 9.20 7.62 -10.98 -0.08 9.12 16 10 O -0.55 -10.89 16.57 5.56 0.09 -10.80 16 11 N -0.61 -10.06 3.36 -170.74 -0.57 -10.63 16 12 C 0.11 1.71 5.93 -2.31 -0.01 1.70 16 13 C -0.11 -1.79 4.04 -88.47 -0.36 -2.15 16 14 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 15 C 0.15 2.83 6.59 -3.60 -0.02 2.81 16 16 N -0.60 -14.85 3.38 -171.88 -0.58 -15.43 16 17 C -0.23 -6.16 10.25 -15.06 -0.15 -6.31 16 18 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 19 C -0.01 -0.26 5.48 -17.43 -0.10 -0.35 16 20 N -0.92 -26.58 10.16 55.49 0.56 -26.02 16 21 Si 0.91 21.81 29.55 -169.99 -5.02 16.78 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 C 0.17 3.99 4.91 -3.39 -0.02 3.98 16 26 C -0.12 -2.20 4.05 -88.48 -0.36 -2.56 16 27 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 28 C 0.12 2.15 6.22 -3.61 -0.02 2.12 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.48 7.29 -51.93 -0.38 0.11 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.57 7.90 -51.93 -0.41 0.16 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.10 1.24 8.14 -51.92 -0.42 0.82 16 37 H 0.10 0.95 8.05 -51.93 -0.42 0.53 16 38 H 0.08 1.29 7.57 -51.93 -0.39 0.90 16 39 H 0.07 0.82 7.22 -51.93 -0.37 0.44 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.02 0.47 7.62 -51.93 -0.40 0.07 16 42 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.09 2.50 6.19 -51.92 -0.32 2.17 16 44 H 0.02 0.49 7.61 -51.93 -0.40 0.10 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.07 1.37 7.67 -51.93 -0.40 0.98 16 LS Contribution 358.93 15.07 5.41 5.41 Total: -1.00 -31.16 358.93 -9.96 -41.12 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -8.00 Total: 0.07 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -1.85 Total: -0.49 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.59 Total: -52.08 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.16 -9.96 -41.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049141679.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.543 kcal (2) G-P(sol) polarization free energy of solvation -31.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.41 seconds