Wall clock time and date at job start Tue Mar 31 2020 08:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47172 * 2 1 4 4 C 1.53006 * 109.46770 * 119.99799 * 2 1 3 5 5 H 1.08999 * 115.54765 * 325.67158 * 4 2 1 6 6 C 1.53001 * 117.49897 * 111.37933 * 4 2 1 7 7 C 1.53000 * 60.00124 * 107.48792 * 6 4 2 8 8 H 1.08999 * 117.49963 * 252.51150 * 7 6 4 9 9 C 1.50694 * 117.51797 * 107.47647 * 7 6 4 10 10 O 1.21277 * 120.00692 * 291.37348 * 9 7 6 11 11 N 1.34786 * 119.99775 * 111.37626 * 9 7 6 12 12 C 1.46651 * 125.33342 * 180.02562 * 11 9 7 13 13 C 1.53679 * 107.97031 * 180.70908 * 12 11 9 14 14 H 1.08995 * 112.77811 * 140.60525 * 13 12 11 15 15 C 1.53986 * 109.29335 * 266.92722 * 13 12 11 16 16 N 1.46763 * 106.67362 * 138.83376 * 15 13 12 17 17 C 1.36941 * 125.33276 * 161.58638 * 16 15 13 18 18 H 1.07993 * 120.00140 * 354.06636 * 17 16 15 19 19 C 1.38811 * 119.99732 * 174.06740 * 17 16 15 20 20 N 1.31616 * 120.00423 * 6.96670 * 19 17 16 21 21 Si 1.86801 * 119.99761 * 186.96478 * 19 17 16 22 22 H 1.48499 * 109.47077 * 94.98923 * 21 19 17 23 23 H 1.48497 * 109.47133 * 214.98498 * 21 19 17 24 24 H 1.48494 * 109.47165 * 334.98724 * 21 19 17 25 25 C 1.46653 * 109.33105 * 341.54764 * 16 15 13 26 26 C 1.53675 * 107.97301 * 0.71111 * 25 16 15 27 27 H 1.09002 * 112.77475 * 139.88187 * 26 25 16 28 28 C 1.46753 * 125.32993 * 359.69316 * 11 9 7 29 29 H 1.08995 * 109.47873 * 300.00323 * 1 2 3 30 30 H 1.09003 * 109.46893 * 60.00496 * 1 2 3 31 31 H 1.09004 * 109.47248 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47275 * 239.99246 * 2 1 3 33 33 H 1.09003 * 109.46806 * 299.99557 * 3 2 1 34 34 H 1.08998 * 109.47636 * 59.99467 * 3 2 1 35 35 H 1.08999 * 109.46907 * 179.97438 * 3 2 1 36 36 H 1.09003 * 117.49592 * 214.98052 * 6 4 2 37 37 H 1.09005 * 117.49615 * 359.97438 * 6 4 2 38 38 H 1.09004 * 109.76880 * 300.33007 * 12 11 9 39 39 H 1.09003 * 109.77203 * 61.06243 * 12 11 9 40 40 H 1.08992 * 110.01869 * 258.13750 * 15 13 12 41 41 H 1.09002 * 110.01774 * 19.53402 * 15 13 12 42 42 H 0.96998 * 120.00546 * 180.02562 * 20 19 17 43 43 H 1.09008 * 109.76578 * 120.34090 * 25 16 15 44 44 H 1.08997 * 109.77100 * 241.06306 * 25 16 15 45 45 H 1.09002 * 110.01892 * 280.85100 * 28 11 9 46 46 H 1.08998 * 110.02279 * 42.24999 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.4309 -0.5979 2.1448 6 6 2.7418 -2.0663 1.0515 7 6 3.5550 -0.8281 1.4344 8 1 4.1884 -0.3846 0.6662 9 6 4.0909 -0.7547 2.8409 10 8 3.3287 -0.6158 3.7740 11 7 5.4175 -0.8433 3.0621 12 6 6.0638 -0.7869 4.3773 13 6 7.5811 -0.9083 4.1657 14 1 8.1528 -0.2559 4.8256 15 6 7.9945 -2.3869 4.2836 16 7 8.9796 -2.6345 3.2243 17 6 9.8552 -3.6868 3.1873 18 1 9.9220 -4.3634 4.0263 19 6 10.6570 -3.8835 2.0714 20 7 10.6771 -2.9860 1.1089 21 14 11.7076 -5.4221 1.9358 22 1 10.9779 -6.4525 1.1541 23 1 12.9828 -5.0920 1.2503 24 1 11.9973 -5.9451 3.2951 25 6 8.8787 -1.5791 2.2111 26 6 7.7832 -0.5975 2.6564 27 1 8.0469 0.4431 2.4676 28 6 6.4410 -1.0183 2.0249 29 1 -0.3635 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6767 1.9562 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 3.1300 1.4424 0.0005 36 1 2.5945 -2.8282 1.8170 37 1 2.8399 -2.4376 0.0314 38 1 5.8339 0.1628 4.8606 39 1 5.7107 -1.6109 4.9973 40 1 8.4419 -2.5725 5.2600 41 1 7.1255 -3.0297 4.1427 42 1 11.2371 -3.1237 0.3290 43 1 9.8312 -1.0555 2.1280 44 1 8.6132 -2.0161 1.2486 45 1 6.4825 -2.0622 1.7140 46 1 6.2171 -0.3821 1.1686 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049141680.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:33:25 Heat of formation + Delta-G solvation = 5.120378 kcal Electronic energy + Delta-G solvation = -24074.517746 eV Core-core repulsion = 20771.991005 eV Total energy + Delta-G solvation = -3302.526741 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 5.15 seconds Orbital eigenvalues (eV) -40.37721 -38.90950 -37.23025 -34.96644 -33.45051 -32.25900 -30.14960 -29.80143 -27.36739 -25.98887 -25.51488 -24.26601 -23.02024 -22.22121 -20.23227 -20.01822 -19.34395 -18.85536 -17.32514 -16.72553 -15.88888 -15.42032 -15.20313 -14.72898 -14.48896 -14.28122 -13.75687 -13.33169 -13.29835 -13.22158 -12.93521 -12.66184 -12.37496 -12.33102 -12.08011 -11.83116 -11.74528 -11.47302 -11.39722 -11.30187 -10.91337 -10.83946 -10.83253 -10.36478 -10.33099 -10.19857 -10.14548 -9.98287 -9.95647 -9.70194 -9.59767 -8.62174 -8.38092 -6.86880 -5.77850 -3.09974 2.62302 3.13172 3.37633 3.43506 3.44917 3.78508 4.38441 4.46114 4.62613 4.67847 4.79264 4.88459 4.94691 5.10740 5.11277 5.19353 5.27059 5.43160 5.45996 5.47405 5.50665 5.61711 5.63128 5.67542 5.71066 5.74446 5.85370 5.86909 5.90966 5.92170 6.00146 6.11027 6.12496 6.22766 6.27813 6.34373 6.50147 6.60094 6.65585 6.83406 7.47128 7.53551 7.73068 7.76934 8.21858 8.33848 9.18015 9.78389 10.42742 11.34271 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.022650 B = 0.003525 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.909668 B = 7942.407683 C = 8451.056519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.067 4.067 3 C -0.146 4.146 4 C -0.114 4.114 5 H 0.116 0.884 6 C -0.147 4.147 7 C -0.182 4.182 8 H 0.122 0.878 9 C 0.556 3.444 10 O -0.552 6.552 11 N -0.606 5.606 12 C 0.119 3.881 13 C -0.109 4.109 14 H 0.096 0.904 15 C 0.143 3.857 16 N -0.603 5.603 17 C -0.229 4.229 18 H 0.078 0.922 19 C -0.006 4.006 20 N -0.921 5.921 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.186 3.814 26 C -0.122 4.122 27 H 0.088 0.912 28 C 0.112 3.888 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.035 0.965 41 H 0.019 0.981 42 H 0.253 0.747 43 H 0.046 0.954 44 H 0.052 0.948 45 H 0.077 0.923 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.254 7.460 -2.340 17.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.085 4.085 3 C -0.204 4.204 4 C -0.133 4.133 5 H 0.134 0.866 6 C -0.184 4.184 7 C -0.203 4.203 8 H 0.140 0.860 9 C 0.345 3.655 10 O -0.431 6.431 11 N -0.338 5.338 12 C -0.003 4.003 13 C -0.129 4.129 14 H 0.115 0.885 15 C 0.017 3.983 16 N -0.329 5.329 17 C -0.358 4.358 18 H 0.096 0.904 19 C -0.202 4.202 20 N -0.568 5.568 21 Si 0.741 3.259 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.206 1.206 25 C 0.061 3.939 26 C -0.142 4.142 27 H 0.107 0.893 28 C -0.010 4.010 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.054 0.946 41 H 0.036 0.964 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.095 0.905 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.555 7.448 -1.996 17.362 hybrid contribution 0.840 -0.814 -0.154 1.180 sum -14.715 6.633 -2.150 16.284 Atomic orbital electron populations 1.21795 0.94680 1.01866 1.01749 1.20742 0.95896 0.96034 0.95869 1.21821 1.01260 0.95619 1.01671 1.22466 0.92075 0.98631 1.00137 0.86609 1.23072 1.01471 0.90874 1.02979 1.22219 0.95848 1.06372 0.95888 0.85981 1.19269 0.80476 0.76022 0.89721 1.90656 1.56592 1.50936 1.44953 1.48248 1.05434 1.71187 1.08978 1.21732 0.92375 1.01379 0.84852 1.22872 0.93320 0.99385 0.97339 0.88542 1.21321 0.92583 0.91395 0.93004 1.44232 1.39352 1.27561 1.21764 1.19059 1.13555 1.02265 1.00872 0.90392 1.24803 1.00190 0.98545 0.96702 1.69955 1.42993 1.33859 1.10011 0.86113 0.79444 0.82724 0.77597 1.21604 1.21757 1.20635 1.20993 0.93547 0.86971 0.92348 1.23211 0.95728 1.00867 0.94367 0.89341 1.22267 0.86735 1.01744 0.90293 0.92527 0.92657 0.92514 0.90983 0.92713 0.92504 0.92558 0.88344 0.87789 0.92018 0.91474 0.94643 0.96351 0.93707 0.93618 0.93000 0.90503 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.17 37.16 0.34 -0.77 16 2 C -0.07 -0.59 3.07 -90.62 -0.28 -0.87 16 3 C -0.15 -1.28 9.03 37.15 0.34 -0.95 16 4 C -0.11 -1.26 4.66 -90.61 -0.42 -1.69 16 5 H 0.12 1.46 7.64 -51.93 -0.40 1.06 16 6 C -0.15 -1.63 9.88 -26.73 -0.26 -1.89 16 7 C -0.18 -2.29 4.72 -91.77 -0.43 -2.73 16 8 H 0.12 1.39 6.61 -51.93 -0.34 1.04 16 9 C 0.56 8.95 7.62 -10.98 -0.08 8.86 16 10 O -0.55 -10.45 16.57 5.56 0.09 -10.36 16 11 N -0.61 -9.70 3.31 -172.21 -0.57 -10.27 16 12 C 0.12 1.89 6.19 -3.61 -0.02 1.86 16 13 C -0.11 -1.83 4.10 -88.47 -0.36 -2.19 16 14 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 15 C 0.14 2.90 6.42 -3.38 -0.02 2.88 16 16 N -0.60 -14.82 3.38 -171.88 -0.58 -15.40 16 17 C -0.23 -6.24 10.24 -15.06 -0.15 -6.39 16 18 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 19 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 20 N -0.92 -26.06 10.30 55.49 0.57 -25.49 16 21 Si 0.91 21.67 29.56 -169.99 -5.02 16.65 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.19 4.22 4.73 -3.61 -0.02 4.21 16 26 C -0.12 -2.10 4.12 -88.37 -0.36 -2.47 16 27 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 28 C 0.11 1.78 5.79 -3.28 -0.02 1.76 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.60 7.90 -51.93 -0.41 0.19 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.52 7.29 -51.93 -0.38 0.14 16 36 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.10 0.97 8.05 -51.93 -0.42 0.56 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 1.09 7.63 -51.93 -0.40 0.69 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 42 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.05 1.16 7.52 -51.92 -0.39 0.77 16 44 H 0.05 1.29 6.81 -51.93 -0.35 0.94 16 45 H 0.08 1.38 7.58 -51.93 -0.39 0.98 16 46 H 0.07 0.91 7.16 -51.93 -0.37 0.54 16 LS Contribution 358.96 15.07 5.41 5.41 Total: -1.00 -30.55 358.96 -9.98 -40.53 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -8.02 Total: -0.42 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -1.86 Total: -0.65 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -0.58 Total: -51.16 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.55 -9.98 -40.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049141680.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.653 kcal (2) G-P(sol) polarization free energy of solvation -30.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.15 seconds