Wall clock time and date at job start Tue Mar 31 2020 08:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.46877 * 2 1 4 4 C 1.53000 * 109.47009 * 119.99897 * 2 1 3 5 5 H 1.09001 * 115.55912 * 209.11988 * 4 2 1 6 6 C 1.52995 * 117.50045 * 354.81231 * 4 2 1 7 7 C 1.53001 * 60.00226 * 107.49187 * 6 4 2 8 8 H 1.08994 * 117.50196 * 107.50940 * 7 6 4 9 9 C 1.50700 * 117.49689 * 252.51434 * 7 6 4 10 10 O 1.21279 * 120.00088 * 105.29443 * 9 7 6 11 11 N 1.34774 * 119.99829 * 285.56630 * 9 7 6 12 12 C 1.46657 * 125.33570 * 179.72805 * 11 9 7 13 13 C 1.53671 * 107.97286 * 180.71288 * 12 11 9 14 14 H 1.08997 * 112.77763 * 139.88305 * 13 12 11 15 15 C 1.53982 * 109.29897 * 266.21147 * 13 12 11 16 16 N 1.46752 * 106.68109 * 138.83394 * 15 13 12 17 17 C 1.36939 * 125.33313 * 161.58203 * 16 15 13 18 18 H 1.07998 * 120.00487 * 357.94108 * 17 16 15 19 19 C 1.38818 * 119.99713 * 177.93497 * 17 16 15 20 20 N 1.31619 * 120.00225 * 344.30899 * 19 17 16 21 21 Si 1.86797 * 119.99932 * 164.30971 * 19 17 16 22 22 H 1.48505 * 109.47065 * 94.43455 * 21 19 17 23 23 H 1.48497 * 109.47330 * 214.43346 * 21 19 17 24 24 H 1.48503 * 109.47342 * 334.43625 * 21 19 17 25 25 C 1.46656 * 109.33086 * 341.54704 * 16 15 13 26 26 C 1.54830 * 108.22927 * 1.23368 * 25 16 15 27 27 H 1.09008 * 113.50137 * 139.07364 * 26 25 16 28 28 C 1.46762 * 125.33170 * 359.42667 * 11 9 7 29 29 H 1.09004 * 109.47000 * 298.21772 * 1 2 3 30 30 H 1.08995 * 109.47518 * 58.21976 * 1 2 3 31 31 H 1.09004 * 109.47073 * 178.22836 * 1 2 3 32 32 H 1.08996 * 109.47066 * 239.99660 * 2 1 3 33 33 H 1.09003 * 109.47241 * 186.85403 * 3 2 1 34 34 H 1.09000 * 109.47405 * 306.85022 * 3 2 1 35 35 H 1.08999 * 109.47680 * 66.85051 * 3 2 1 36 36 H 1.08994 * 117.50402 * 0.02562 * 6 4 2 37 37 H 1.09007 * 117.50158 * 214.97762 * 6 4 2 38 38 H 1.09001 * 109.76784 * 300.34001 * 12 11 9 39 39 H 1.08994 * 109.76756 * 61.06442 * 12 11 9 40 40 H 1.09008 * 110.01498 * 258.13936 * 15 13 12 41 41 H 1.09004 * 110.01521 * 19.52246 * 15 13 12 42 42 H 0.96994 * 120.00015 * 179.97438 * 20 19 17 43 43 H 1.09010 * 109.76569 * 120.33903 * 25 16 15 44 44 H 1.08994 * 109.77098 * 241.06759 * 25 16 15 45 45 H 1.09006 * 110.01478 * 280.84379 * 28 11 9 46 46 H 1.08988 * 110.02067 * 42.24187 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.0067 -0.3853 1.6245 6 6 1.0012 -1.1732 2.2776 7 6 1.7033 -2.2067 1.3944 8 1 2.4481 -2.8482 1.8652 9 6 0.8946 -2.8474 0.2959 10 8 1.0720 -2.5191 -0.8580 11 7 -0.0295 -3.7812 0.5964 12 6 -0.8827 -4.4736 -0.3749 13 6 -1.7968 -5.4367 0.3987 14 1 -2.8139 -5.4588 0.0075 15 6 -1.1446 -6.8308 0.4446 16 7 -1.3616 -7.3530 1.7988 17 6 -1.2671 -8.6692 2.1646 18 1 -1.0472 -9.4218 1.4218 19 6 -1.4537 -9.0362 3.4903 20 7 -1.4132 -8.1235 4.4378 21 14 -1.7622 -10.8254 3.9296 22 1 -0.4763 -11.4760 4.2878 23 1 -2.6925 -10.8982 5.0848 24 1 -2.3632 -11.5245 2.7653 25 6 -1.6948 -6.2443 2.6990 26 6 -1.7224 -4.9377 1.8687 27 1 -2.5430 -4.2711 2.1342 28 6 -0.3353 -4.2691 1.9464 29 1 -0.3633 0.4859 0.9056 30 1 -0.3634 0.5412 -0.8735 31 1 -0.3633 -1.0272 -0.0318 32 1 1.8933 -0.5139 -0.8899 33 1 3.1230 1.4450 -0.1226 34 1 1.5800 1.9905 -0.8223 35 1 1.7802 1.9198 0.9449 36 1 -0.0455 -0.9572 2.0640 37 1 1.2844 -1.1347 3.3295 38 1 -1.4876 -3.7474 -0.9178 39 1 -0.2639 -5.0347 -1.0751 40 1 -1.6147 -7.4869 -0.2881 41 1 -0.0766 -6.7499 0.2425 42 1 -1.5440 -8.3799 5.3641 43 1 -2.6780 -6.4099 3.1397 44 1 -0.9453 -6.1712 3.4870 45 1 0.4150 -4.9953 2.2595 46 1 -0.3631 -3.4349 2.6472 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049141682.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:33:45 Heat of formation + Delta-G solvation = 14.404625 kcal Electronic energy + Delta-G solvation = -24571.646200 eV Core-core repulsion = 21269.522055 eV Total energy + Delta-G solvation = -3302.124146 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.59399 -38.99329 -36.99709 -34.96300 -33.24439 -32.17787 -30.09477 -29.78305 -27.28366 -25.93347 -25.49055 -24.18468 -23.58920 -22.17082 -20.25081 -19.63117 -19.34328 -18.58848 -17.15189 -16.66544 -16.20875 -15.46151 -15.15354 -14.74805 -14.64483 -14.12891 -13.98251 -13.61578 -13.14871 -12.95192 -12.74674 -12.63138 -12.34494 -12.10030 -11.83062 -11.81701 -11.66617 -11.52939 -11.38753 -11.01937 -10.92647 -10.83414 -10.81297 -10.48321 -10.29432 -10.17401 -10.09710 -9.97259 -9.92213 -9.69630 -9.35604 -8.61310 -8.35868 -6.87782 -5.78554 -3.09610 2.75285 3.14067 3.37459 3.44294 3.46363 3.67063 4.44167 4.46942 4.63471 4.74799 4.82911 4.91419 4.99431 5.12638 5.21421 5.24517 5.34133 5.44682 5.51485 5.54869 5.58872 5.62584 5.66097 5.72925 5.79902 5.86153 5.88835 5.89147 5.91676 5.98380 6.13810 6.14028 6.22757 6.29233 6.30898 6.44596 6.52054 6.60374 6.65384 6.83078 7.37284 7.55760 7.74007 7.75888 8.20923 8.36346 9.15840 9.78299 10.42145 11.32268 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.034206 B = 0.003548 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.380066 B = 7889.348103 C = 8241.820122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.071 4.071 3 C -0.143 4.143 4 C -0.114 4.114 5 H 0.110 0.890 6 C -0.164 4.164 7 C -0.181 4.181 8 H 0.128 0.872 9 C 0.559 3.441 10 O -0.543 6.543 11 N -0.607 5.607 12 C 0.119 3.881 13 C -0.109 4.109 14 H 0.095 0.905 15 C 0.143 3.857 16 N -0.600 5.600 17 C -0.231 4.231 18 H 0.079 0.921 19 C -0.006 4.006 20 N -0.915 5.915 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.182 3.818 26 C -0.121 4.121 27 H 0.089 0.911 28 C 0.112 3.888 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.036 0.964 41 H 0.018 0.982 42 H 0.253 0.747 43 H 0.030 0.970 44 H 0.066 0.934 45 H 0.076 0.924 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.184 16.084 -4.904 17.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.089 4.089 3 C -0.200 4.200 4 C -0.132 4.132 5 H 0.128 0.872 6 C -0.201 4.201 7 C -0.202 4.202 8 H 0.146 0.854 9 C 0.348 3.652 10 O -0.421 6.421 11 N -0.340 5.340 12 C -0.004 4.004 13 C -0.129 4.129 14 H 0.113 0.887 15 C 0.017 3.983 16 N -0.327 5.327 17 C -0.360 4.360 18 H 0.096 0.904 19 C -0.203 4.203 20 N -0.562 5.562 21 Si 0.737 3.263 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.207 1.207 25 C 0.056 3.944 26 C -0.141 4.141 27 H 0.107 0.893 28 C -0.011 4.011 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.055 0.945 41 H 0.036 0.964 42 H 0.063 0.937 43 H 0.049 0.951 44 H 0.084 0.916 45 H 0.094 0.906 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.317 16.178 -5.341 17.357 hybrid contribution -0.143 -1.143 0.492 1.252 sum 3.174 15.035 -4.849 16.114 Atomic orbital electron populations 1.22001 0.95522 1.02050 1.00876 1.20724 0.95641 0.95106 0.97422 1.21822 1.00673 0.96088 1.01455 1.22453 0.99740 0.93127 0.97928 0.87209 1.23275 0.99063 1.01080 0.96696 1.22183 1.03688 0.93491 1.00835 0.85438 1.19206 0.78837 0.78205 0.88928 1.90647 1.67740 1.62650 1.21105 1.48342 1.37168 1.39115 1.09332 1.21723 0.92496 0.94467 0.91665 1.22858 0.98853 0.95816 0.95386 0.88689 1.21320 0.96471 0.91258 0.89253 1.44234 1.81978 1.03695 1.02755 1.19011 1.42312 0.81717 0.92911 0.90363 1.24740 1.02318 0.97769 0.95428 1.69975 1.55009 1.31843 0.99410 0.86184 0.77827 0.84516 0.77767 1.21685 1.21572 1.20653 1.21215 1.00211 0.81835 0.91104 1.23375 0.95336 0.99241 0.96159 0.89314 1.22250 0.97535 0.98303 0.82984 0.93039 0.93026 0.92310 0.88790 0.92895 0.92813 0.92905 0.87740 0.88021 0.92105 0.91477 0.94532 0.96427 0.93706 0.95145 0.91599 0.90611 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 7.44 37.16 0.28 -1.44 16 2 C -0.07 -0.80 2.44 -90.62 -0.22 -1.02 16 3 C -0.14 -1.29 9.16 37.15 0.34 -0.95 16 4 C -0.11 -1.22 5.71 -90.62 -0.52 -1.74 16 5 H 0.11 1.01 8.09 -51.93 -0.42 0.59 16 6 C -0.16 -1.69 8.42 -26.73 -0.23 -1.92 16 7 C -0.18 -2.25 5.26 -91.77 -0.48 -2.73 16 8 H 0.13 1.49 8.14 -51.93 -0.42 1.07 16 9 C 0.56 8.61 5.39 -10.99 -0.06 8.55 16 10 O -0.54 -9.62 13.82 5.56 0.08 -9.54 16 11 N -0.61 -9.40 3.31 -172.22 -0.57 -9.97 16 12 C 0.12 1.84 6.20 -3.61 -0.02 1.82 16 13 C -0.11 -1.80 4.05 -88.48 -0.36 -2.16 16 14 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 15 C 0.14 2.88 6.45 -3.39 -0.02 2.86 16 16 N -0.60 -14.73 3.38 -171.16 -0.58 -15.30 16 17 C -0.23 -6.30 10.21 -15.06 -0.15 -6.45 16 18 H 0.08 2.08 7.88 -52.49 -0.41 1.67 16 19 C -0.01 -0.16 5.39 -17.43 -0.09 -0.25 16 20 N -0.92 -25.91 10.58 55.49 0.59 -25.32 16 21 Si 0.91 21.62 29.58 -169.99 -5.03 16.60 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C 0.18 4.09 4.79 -2.99 -0.01 4.07 16 26 C -0.12 -2.06 4.21 -87.76 -0.37 -2.43 16 27 H 0.09 1.35 8.14 -51.92 -0.42 0.92 16 28 C 0.11 1.75 5.83 -3.28 -0.02 1.73 16 29 H 0.05 0.53 7.03 -51.93 -0.36 0.16 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.81 4.92 -51.93 -0.26 0.55 16 32 H 0.09 1.30 6.57 -51.93 -0.34 0.96 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.10 1.12 5.82 -51.93 -0.30 0.82 16 37 H 0.10 0.89 8.14 -51.92 -0.42 0.47 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.07 1.07 7.61 -51.93 -0.40 0.68 16 40 H 0.04 0.72 8.14 -51.92 -0.42 0.30 16 41 H 0.02 0.38 7.55 -51.93 -0.39 -0.02 16 42 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.03 0.76 7.92 -51.92 -0.41 0.35 16 44 H 0.07 1.65 6.49 -51.93 -0.34 1.31 16 45 H 0.08 1.36 7.55 -51.93 -0.39 0.97 16 46 H 0.07 0.95 7.01 -51.94 -0.36 0.59 16 LS Contribution 347.12 15.07 5.23 5.23 Total: -1.00 -29.96 347.12 -9.98 -39.94 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -7.75 Total: 0.43 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -1.94 Total: -2.06 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: -0.56 Total: -50.60 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.08 Total: -9.54 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.96 -9.98 -39.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049141682.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.343 kcal (2) G-P(sol) polarization free energy of solvation -29.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds