Wall clock time and date at job start Tue Mar 31 2020 06:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46919 * 2 1 4 4 C 1.52998 * 115.56141 * 325.68505 * 3 2 1 5 5 C 1.52999 * 117.49804 * 111.38077 * 3 2 1 6 6 C 1.53001 * 60.00190 * 107.48732 * 5 3 2 7 7 H 1.09002 * 117.49822 * 252.51020 * 6 5 3 8 8 C 1.50701 * 117.51956 * 107.47765 * 6 5 3 9 9 O 1.21279 * 120.00290 * 291.28789 * 8 6 5 10 10 N 1.34778 * 119.99999 * 111.28092 * 8 6 5 11 11 C 1.46749 * 125.32803 * 359.69789 * 10 8 6 12 12 C 1.54093 * 106.63393 * 161.57943 * 11 10 8 13 13 H 1.09006 * 112.89994 * 151.03198 * 12 11 10 14 14 C 1.53964 * 109.45085 * 278.64031 * 12 11 10 15 15 N 1.46778 * 106.62815 * 138.17539 * 14 12 11 16 16 C 1.36936 * 125.33816 * 161.50759 * 15 14 12 17 17 H 1.08000 * 119.99992 * 0.02562 * 16 15 14 18 18 C 1.38814 * 120.00170 * 179.97438 * 16 15 14 19 19 N 1.31622 * 119.99464 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00100 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46890 * 90.00278 * 20 18 16 22 22 H 1.48506 * 109.46813 * 210.00044 * 20 18 16 23 23 H 1.48493 * 109.47343 * 330.00229 * 20 18 16 24 24 C 1.46665 * 109.32372 * 341.48332 * 15 14 12 25 25 C 1.53725 * 107.94204 * 0.54703 * 24 15 14 26 26 H 1.09000 * 113.05815 * 139.99979 * 25 24 15 27 27 C 1.46637 * 125.33240 * 180.02562 * 10 8 6 28 28 H 1.08998 * 109.47249 * 60.00095 * 1 2 3 29 29 H 1.08999 * 109.47049 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47306 * 300.00123 * 1 2 3 31 31 H 1.09006 * 109.47158 * 240.00161 * 2 1 3 32 32 H 1.08998 * 109.47249 * 119.99905 * 2 1 3 33 33 H 1.08996 * 109.47764 * 274.31210 * 4 3 2 34 34 H 1.08998 * 109.46995 * 34.31857 * 4 3 2 35 35 H 1.09002 * 109.46781 * 154.31119 * 4 3 2 36 36 H 1.09001 * 117.50150 * 359.97438 * 5 3 2 37 37 H 1.08995 * 117.49529 * 214.97558 * 5 3 2 38 38 H 1.08998 * 110.00888 * 281.01298 * 11 10 8 39 39 H 1.09003 * 110.00755 * 42.37849 * 11 10 8 40 40 H 1.09000 * 110.03024 * 257.47202 * 14 12 11 41 41 H 1.09003 * 110.02398 * 18.83931 * 14 12 11 42 42 H 0.96999 * 119.99396 * 179.97438 * 19 18 16 43 43 H 1.08994 * 109.77688 * 240.92627 * 24 15 14 44 44 H 1.09004 * 109.76993 * 120.16538 * 24 15 14 45 45 H 1.09005 * 109.75926 * 300.45043 * 27 10 8 46 46 H 1.09001 * 109.75894 * 61.16218 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.1851 2.4449 -0.7781 5 6 2.7418 1.9437 1.2637 6 6 3.5550 1.6562 0.0000 7 1 4.1883 0.7691 0.0000 8 6 4.0910 2.8376 -0.7669 9 8 3.3289 3.5753 -1.3549 10 7 5.4174 3.0745 -0.7991 11 6 6.4406 2.2649 -0.1274 12 6 7.7841 2.6038 -0.8015 13 1 8.6357 2.4910 -0.1306 14 6 7.9185 1.8017 -2.1088 15 7 8.4794 2.7185 -3.1084 16 6 9.0850 2.3416 -4.2773 17 1 9.1786 1.2942 -4.5237 18 6 9.5777 3.3056 -5.1460 19 7 9.4632 4.5821 -4.8459 20 14 10.4045 2.7914 -6.7402 21 1 9.3868 2.6972 -7.8176 22 1 11.4291 3.7994 -7.1139 23 1 11.0547 1.4691 -6.5565 24 6 8.2891 4.1016 -2.6592 25 6 7.5811 4.0634 -1.2952 26 1 7.9665 4.8030 -0.5934 27 6 6.0636 4.1853 -1.5053 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.4775 2.4339 -1.8280 34 1 0.1338 2.1707 -0.6908 35 1 1.3350 3.4443 -0.3696 36 1 2.8400 1.2458 2.0953 37 1 2.5946 2.9875 1.5408 38 1 6.4784 2.5162 0.9326 39 1 6.2187 1.2050 -0.2520 40 1 8.5893 0.9555 -1.9603 41 1 6.9392 1.4490 -2.4327 42 1 9.8079 5.2557 -5.4528 43 1 7.6740 4.6417 -3.3789 44 1 9.2568 4.5931 -2.5588 45 1 5.8333 4.1293 -2.5693 46 1 5.7104 5.1340 -1.1013 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049148865.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:57 Heat of formation + Delta-G solvation = 15.411621 kcal Electronic energy + Delta-G solvation = -24312.796600 eV Core-core repulsion = 21010.716121 eV Total energy + Delta-G solvation = -3302.080479 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.48093 -39.06926 -37.07808 -34.93739 -32.49176 -32.10442 -30.25400 -29.64769 -28.09418 -26.04870 -25.48299 -24.16616 -23.78291 -22.29751 -20.18856 -19.49616 -19.31522 -18.39398 -17.23206 -16.63772 -15.98239 -15.18964 -15.03477 -14.75119 -14.65125 -14.32760 -13.68654 -13.38688 -13.26558 -13.13111 -12.64829 -12.63278 -12.33335 -12.30327 -12.04352 -11.86098 -11.69587 -11.66323 -11.46242 -11.23243 -10.95459 -10.89533 -10.80861 -10.34346 -10.18490 -10.11407 -10.00529 -9.92311 -9.84175 -9.66802 -9.28840 -8.61392 -8.30258 -6.83860 -5.72817 -3.06283 2.66370 3.18370 3.40168 3.45025 3.46845 3.71858 4.42404 4.48397 4.55270 4.68559 4.78854 4.86481 4.94672 5.09966 5.12924 5.27286 5.30227 5.46421 5.48450 5.52712 5.57510 5.65516 5.70339 5.74724 5.77554 5.78854 5.84055 5.91377 5.94472 5.99716 6.10206 6.16093 6.17975 6.28764 6.35019 6.53922 6.59042 6.62807 6.70994 6.83818 7.54321 7.55703 7.79583 7.80433 8.25723 8.42225 9.21610 9.82005 10.45924 11.38850 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.024227 B = 0.003572 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.443097 B = 7836.497983 C = 8141.415827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.088 4.088 3 C -0.090 4.090 4 C -0.108 4.108 5 C -0.147 4.147 6 C -0.182 4.182 7 H 0.120 0.880 8 C 0.554 3.446 9 O -0.540 6.540 10 N -0.605 5.605 11 C 0.112 3.888 12 C -0.110 4.110 13 H 0.098 0.902 14 C 0.146 3.854 15 N -0.602 5.602 16 C -0.230 4.230 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.922 5.922 20 Si 0.913 3.087 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.187 3.813 25 C -0.123 4.123 26 H 0.088 0.912 27 C 0.120 3.880 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.035 0.965 41 H 0.017 0.983 42 H 0.253 0.747 43 H 0.049 0.951 44 H 0.048 0.952 45 H 0.074 0.926 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.413 -6.621 14.549 20.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.125 4.125 3 C -0.091 4.091 4 C -0.165 4.165 5 C -0.185 4.185 6 C -0.203 4.203 7 H 0.138 0.862 8 C 0.343 3.657 9 O -0.418 6.418 10 N -0.338 5.338 11 C -0.012 4.012 12 C -0.130 4.130 13 H 0.116 0.884 14 C 0.019 3.981 15 N -0.329 5.329 16 C -0.358 4.358 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.569 5.569 20 Si 0.743 3.257 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.062 3.938 25 C -0.142 4.142 26 H 0.106 0.894 27 C -0.002 4.002 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.053 0.947 41 H 0.035 0.965 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.093 0.907 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.787 -6.125 14.031 19.947 hybrid contribution 0.759 -0.260 -0.823 1.150 sum -12.028 -6.385 13.208 18.971 Atomic orbital electron populations 1.21823 0.95327 1.01363 1.02279 1.21094 0.96212 0.93111 1.02095 1.21591 0.91032 0.96957 0.99498 1.21457 0.97210 0.97181 1.00637 1.23174 1.01983 1.02638 0.90666 1.22331 0.95812 0.99269 1.02873 0.86185 1.19243 0.80485 0.85209 0.80740 1.90688 1.55931 1.49363 1.45777 1.48226 1.05251 1.29223 1.51124 1.21974 0.87890 0.95385 0.95905 1.22975 0.95663 0.96535 0.97812 0.88380 1.21223 0.96337 0.93057 0.87464 1.44217 1.68171 1.00708 1.19760 1.19042 1.29989 0.92438 0.94305 0.90437 1.24804 1.01243 0.95360 0.98973 1.69954 1.51147 0.98835 1.37005 0.86103 0.78859 0.77322 0.83380 1.21594 1.21651 1.20696 1.21034 0.98018 0.86794 0.87937 1.23137 0.93859 0.96203 1.01047 0.89406 1.21955 0.92072 0.88534 0.97668 0.91928 0.92854 0.92593 0.91378 0.91744 0.91385 0.92691 0.91878 0.88073 0.88454 0.91923 0.91102 0.94728 0.96545 0.93695 0.93292 0.93345 0.90727 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.92 37.15 0.33 -0.85 16 2 C -0.09 -0.78 6.12 -26.73 -0.16 -0.95 16 3 C -0.09 -1.00 2.47 -154.51 -0.38 -1.38 16 4 C -0.11 -1.35 7.73 37.16 0.29 -1.06 16 5 C -0.15 -1.48 9.53 -26.73 -0.25 -1.74 16 6 C -0.18 -2.23 5.24 -91.77 -0.48 -2.71 16 7 H 0.12 1.31 7.15 -51.93 -0.37 0.94 16 8 C 0.55 9.01 7.60 -10.98 -0.08 8.93 16 9 O -0.54 -10.37 13.41 5.56 0.07 -10.29 16 10 N -0.61 -9.79 3.30 -172.28 -0.57 -10.36 16 11 C 0.11 1.51 5.76 -3.34 -0.02 1.49 16 12 C -0.11 -1.77 4.16 -88.27 -0.37 -2.14 16 13 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 14 C 0.15 2.94 6.49 -3.39 -0.02 2.92 16 15 N -0.60 -15.22 3.38 -171.84 -0.58 -15.80 16 16 C -0.23 -6.39 10.25 -15.06 -0.15 -6.55 16 17 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 18 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 19 N -0.92 -26.96 10.25 55.49 0.57 -26.39 16 20 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 24 C 0.19 4.44 4.77 -3.57 -0.02 4.42 16 25 C -0.12 -2.20 4.01 -88.60 -0.36 -2.56 16 26 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 27 C 0.12 2.16 6.22 -3.61 -0.02 2.14 16 28 H 0.06 0.51 6.45 -51.93 -0.33 0.18 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.49 7.90 -51.93 -0.41 0.08 16 33 H 0.07 1.00 7.25 -51.93 -0.38 0.63 16 34 H 0.05 0.57 5.59 -51.93 -0.29 0.28 16 35 H 0.06 0.87 7.02 -51.93 -0.36 0.51 16 36 H 0.10 0.79 8.05 -51.93 -0.42 0.38 16 37 H 0.10 1.04 8.05 -51.93 -0.42 0.62 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.86 6.98 -51.93 -0.36 0.50 16 40 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.02 0.35 7.72 -51.93 -0.40 -0.05 16 42 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.05 1.31 6.73 -51.93 -0.35 0.96 16 44 H 0.05 1.27 7.38 -51.93 -0.38 0.89 16 45 H 0.07 1.59 7.29 -51.93 -0.38 1.22 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 350.80 15.07 5.29 5.29 Total: -1.00 -31.60 350.80 -9.83 -41.42 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -7.79 Total: -0.69 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -1.80 Total: -0.33 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.58 Total: -52.55 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.07 Total: -10.29 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.60 -9.83 -41.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049148865.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.835 kcal (2) G-P(sol) polarization free energy of solvation -31.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds