Wall clock time and date at job start Tue Mar 31 2020 06:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47327 * 2 1 4 4 C 1.53004 * 115.55807 * 34.30874 * 3 2 1 5 5 C 1.53075 * 117.51247 * 248.61040 * 3 2 1 6 6 C 1.53002 * 117.49979 * 179.97438 * 3 2 1 7 7 H 1.08997 * 117.49682 * 215.00034 * 6 3 2 8 8 C 1.50697 * 117.49874 * 0.02562 * 6 3 2 9 9 O 1.21290 * 120.00041 * 359.90822 * 8 6 3 10 10 N 1.34772 * 119.99871 * 179.91244 * 8 6 3 11 11 C 1.46740 * 125.32994 * 359.68872 * 10 8 6 12 12 C 1.53938 * 106.71998 * 161.92529 * 11 10 8 13 13 H 1.09003 * 113.60206 * 151.17148 * 12 11 10 14 14 C 1.53963 * 109.25161 * 278.36703 * 12 11 10 15 15 N 1.46771 * 106.62770 * 138.18998 * 14 12 11 16 16 C 1.36936 * 125.34058 * 161.48564 * 15 14 12 17 17 H 1.07997 * 119.99999 * 359.97438 * 16 15 14 18 18 C 1.38818 * 120.00126 * 180.02562 * 16 15 14 19 19 N 1.31623 * 119.99537 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99985 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47113 * 89.99825 * 20 18 16 22 22 H 1.48499 * 109.46949 * 209.99528 * 20 18 16 23 23 H 1.48500 * 109.47449 * 329.99465 * 20 18 16 24 24 C 1.46673 * 109.32442 * 341.47912 * 15 14 12 25 25 C 1.53731 * 107.93933 * 0.54998 * 24 15 14 26 26 H 1.08992 * 113.06002 * 140.00018 * 25 24 15 27 27 C 1.46646 * 125.32835 * 180.02562 * 10 8 6 28 28 H 1.08998 * 109.47041 * 59.99772 * 1 2 3 29 29 H 1.08995 * 109.47156 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46891 * 300.00266 * 1 2 3 31 31 H 1.08995 * 109.47074 * 240.00415 * 2 1 3 32 32 H 1.08998 * 109.47041 * 120.00228 * 2 1 3 33 33 H 1.08997 * 109.47061 * 205.68407 * 4 3 2 34 34 H 1.08988 * 109.47373 * 325.69364 * 4 3 2 35 35 H 1.09004 * 109.46683 * 85.69456 * 4 3 2 36 36 H 1.09004 * 117.48926 * 145.03975 * 5 3 2 37 37 H 1.08991 * 117.53271 * 359.97438 * 5 3 2 38 38 H 1.08998 * 110.01575 * 281.24229 * 11 10 8 39 39 H 1.09001 * 110.00730 * 42.61188 * 11 10 8 40 40 H 1.09004 * 110.02534 * 257.47615 * 14 12 11 41 41 H 1.08998 * 110.02864 * 18.89077 * 14 12 11 42 42 H 0.96998 * 119.99249 * 180.02562 * 19 18 16 43 43 H 1.09000 * 109.77476 * 240.92915 * 24 15 14 44 44 H 1.09001 * 109.77492 * 120.16629 * 24 15 14 45 45 H 1.08998 * 109.75889 * 300.21205 * 27 10 8 46 46 H 1.09004 * 109.76197 * 60.92765 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1852 2.4449 0.7780 5 6 2.7426 1.9441 -1.2641 6 6 3.5551 1.6562 0.0006 7 1 3.9426 2.5107 0.5552 8 6 4.4307 0.4297 0.0006 9 8 3.9282 -0.6742 0.0017 10 7 5.7722 0.5595 -0.0007 11 6 6.5015 1.8328 -0.0086 12 6 7.9380 1.5232 0.4502 13 1 8.6835 2.2041 0.0395 14 6 7.9745 1.4467 1.9874 15 7 8.8272 0.3025 2.3308 16 6 9.4137 0.0893 3.5497 17 1 9.2633 0.7961 4.3524 18 6 10.2025 -1.0347 3.7534 19 7 10.3862 -1.8957 2.7750 20 14 11.0031 -1.3251 5.4159 21 1 10.0870 -2.1179 6.2747 22 1 12.2748 -2.0689 5.2297 23 1 11.2839 -0.0193 6.0650 24 6 8.9525 -0.5770 1.1637 25 6 8.1477 0.0470 0.0121 26 1 8.6466 -0.0392 -0.9531 27 6 6.7314 -0.5497 -0.0014 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.3352 3.4443 0.3697 34 1 0.1339 2.1707 0.6908 35 1 1.4777 2.4339 1.8280 36 1 2.5955 2.9881 -1.5408 37 1 2.8420 1.2466 -2.0957 38 1 6.5133 2.2497 -1.0156 39 1 6.0330 2.5352 0.6808 40 1 8.3980 2.3639 2.3969 41 1 6.9684 1.2930 2.3776 42 1 10.9371 -2.6813 2.9175 43 1 8.5533 -1.5632 1.4006 44 1 10.0007 -0.6623 0.8771 45 1 6.5829 -1.1659 0.8853 46 1 6.5947 -1.1547 -0.8978 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049148966.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:02 Heat of formation + Delta-G solvation = 15.477840 kcal Electronic energy + Delta-G solvation = -24362.459737 eV Core-core repulsion = 21060.382130 eV Total energy + Delta-G solvation = -3302.077608 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.48868 -39.07433 -37.02196 -34.93565 -32.48524 -31.99632 -30.26324 -29.62563 -28.40279 -25.99684 -25.48167 -23.89886 -23.81777 -22.27652 -20.19027 -19.57329 -19.34448 -18.36546 -17.21655 -16.60119 -15.93819 -15.37129 -14.86270 -14.72356 -14.21804 -14.18632 -13.95724 -13.66587 -13.31142 -13.20531 -12.90309 -12.56207 -12.28817 -12.07602 -11.93806 -11.88638 -11.73972 -11.67580 -11.39554 -11.21488 -10.95841 -10.89970 -10.80859 -10.34373 -10.16297 -10.10879 -10.00468 -9.91637 -9.82142 -9.66657 -9.29108 -8.61429 -8.30455 -6.83905 -5.72891 -3.06337 2.65914 3.18562 3.40124 3.44992 3.46809 3.71660 4.45094 4.48429 4.55844 4.70148 4.79430 4.90361 4.96280 5.09606 5.27737 5.30187 5.41869 5.48440 5.49864 5.53065 5.55888 5.62001 5.64416 5.68895 5.73961 5.78314 5.83691 5.88498 5.95112 6.02969 6.14363 6.16255 6.28688 6.30562 6.34953 6.54767 6.58213 6.62512 6.70706 6.83827 7.54200 7.55647 7.79295 7.80266 8.25652 8.41525 9.21551 9.81959 10.45873 11.38780 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.024106 B = 0.003619 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.268646 B = 7734.067501 C = 8000.152609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.076 4.076 3 C -0.090 4.090 4 C -0.123 4.123 5 C -0.147 4.147 6 C -0.182 4.182 7 H 0.121 0.879 8 C 0.554 3.446 9 O -0.540 6.540 10 N -0.605 5.605 11 C 0.113 3.887 12 C -0.111 4.111 13 H 0.099 0.901 14 C 0.145 3.855 15 N -0.602 5.602 16 C -0.230 4.230 17 H 0.078 0.922 18 C -0.007 4.007 19 N -0.922 5.922 20 Si 0.913 3.087 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.187 3.813 25 C -0.122 4.122 26 H 0.088 0.912 27 C 0.120 3.880 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.034 0.966 41 H 0.017 0.983 42 H 0.253 0.747 43 H 0.049 0.951 44 H 0.048 0.952 45 H 0.074 0.926 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.719 9.874 -9.281 20.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.114 4.114 3 C -0.091 4.091 4 C -0.180 4.180 5 C -0.185 4.185 6 C -0.203 4.203 7 H 0.138 0.862 8 C 0.343 3.657 9 O -0.418 6.418 10 N -0.338 5.338 11 C -0.011 4.011 12 C -0.130 4.130 13 H 0.117 0.883 14 C 0.018 3.982 15 N -0.329 5.329 16 C -0.358 4.358 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.569 5.569 20 Si 0.743 3.257 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.207 1.207 24 C 0.062 3.938 25 C -0.142 4.142 26 H 0.106 0.894 27 C -0.002 4.002 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.053 0.947 41 H 0.034 0.966 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.093 0.907 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.911 9.100 -9.167 19.728 hybrid contribution 0.728 -0.080 0.888 1.151 sum -14.184 9.021 -8.279 18.737 Atomic orbital electron populations 1.21935 0.96652 1.01276 1.01298 1.21085 0.93907 0.92411 1.03976 1.21599 0.90598 0.97625 0.99234 1.21513 0.99817 0.96942 0.99706 1.23197 1.01929 1.02255 0.91097 1.22352 0.93759 0.99053 1.05129 0.86159 1.19253 0.80635 0.89598 0.76196 1.90688 1.72881 1.27543 1.50697 1.48218 1.04828 1.08449 1.72283 1.21915 0.92581 0.86124 1.00438 1.22945 0.94596 0.97253 0.98252 0.88321 1.21249 0.94346 0.91796 0.90778 1.44219 1.56484 1.22116 1.10051 1.19044 1.23221 1.05753 0.87779 0.90439 1.24802 1.00362 0.97232 0.97962 1.69954 1.43007 1.13475 1.30502 0.86105 0.78663 0.77762 0.83143 1.21592 1.21649 1.20698 1.21036 0.97106 0.92809 0.82822 1.23136 0.95014 0.94958 1.01127 0.89402 1.21959 0.87300 0.89092 1.01896 0.93075 0.92938 0.92605 0.91034 0.90664 0.92481 0.90944 0.91998 0.88059 0.88457 0.91945 0.91081 0.94733 0.96561 0.93695 0.93293 0.93347 0.90723 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.92 37.16 0.33 -1.16 16 2 C -0.08 -0.95 4.36 -26.73 -0.12 -1.07 16 3 C -0.09 -0.99 2.47 -154.46 -0.38 -1.37 16 4 C -0.12 -1.07 9.49 37.16 0.35 -0.72 16 5 C -0.15 -1.48 9.53 -26.66 -0.25 -1.73 16 6 C -0.18 -2.22 5.24 -91.74 -0.48 -2.70 16 7 H 0.12 1.31 7.16 -51.93 -0.37 0.94 16 8 C 0.55 8.97 7.60 -10.99 -0.08 8.89 16 9 O -0.54 -10.31 13.41 5.55 0.07 -10.24 16 10 N -0.60 -9.75 3.30 -172.37 -0.57 -10.32 16 11 C 0.11 1.52 5.74 -3.42 -0.02 1.50 16 12 C -0.11 -1.78 4.17 -88.35 -0.37 -2.15 16 13 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 14 C 0.14 2.92 6.48 -3.39 -0.02 2.90 16 15 N -0.60 -15.22 3.38 -171.84 -0.58 -15.80 16 16 C -0.23 -6.40 10.25 -15.06 -0.15 -6.55 16 17 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 18 C -0.01 -0.21 5.48 -17.43 -0.10 -0.30 16 19 N -0.92 -26.95 10.25 55.49 0.57 -26.38 16 20 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 24 C 0.19 4.44 4.77 -3.57 -0.02 4.42 16 25 C -0.12 -2.20 4.02 -88.60 -0.36 -2.56 16 26 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 27 C 0.12 2.16 6.22 -3.60 -0.02 2.13 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.49 6.45 -51.93 -0.33 0.15 16 31 H 0.07 1.00 7.02 -51.93 -0.36 0.64 16 32 H 0.07 1.12 7.25 -51.93 -0.38 0.74 16 33 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 34 H 0.07 0.56 5.58 -51.94 -0.29 0.27 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.79 8.05 -51.93 -0.42 0.37 16 37 H 0.10 1.04 8.05 -51.93 -0.42 0.62 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.86 6.97 -51.93 -0.36 0.50 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.02 0.35 7.71 -51.93 -0.40 -0.05 16 42 H 0.25 7.19 8.31 -40.82 -0.34 6.86 16 43 H 0.05 1.31 6.73 -51.93 -0.35 0.96 16 44 H 0.05 1.27 7.37 -51.93 -0.38 0.88 16 45 H 0.07 1.59 7.29 -51.93 -0.38 1.21 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 350.78 15.07 5.29 5.29 Total: -1.00 -31.52 350.78 -9.72 -41.24 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -7.79 Total: -0.45 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -1.69 Total: -0.48 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: -0.58 Total: -52.49 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.07 Total: -10.24 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.52 -9.72 -41.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049148966.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.716 kcal (2) G-P(sol) polarization free energy of solvation -31.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds