Wall clock time and date at job start Tue Mar 31 2020 06:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47074 * 2 1 4 4 C 1.52997 * 115.55273 * 34.32492 * 3 2 1 5 5 C 1.53009 * 117.49626 * 248.62385 * 3 2 1 6 6 C 1.52994 * 117.50055 * 180.02562 * 3 2 1 7 7 H 1.09005 * 117.49592 * 359.97322 * 6 3 2 8 8 C 1.50700 * 117.49992 * 214.97682 * 6 3 2 9 9 O 1.21276 * 119.99644 * 359.97438 * 8 6 3 10 10 N 1.34773 * 120.00155 * 179.97438 * 8 6 3 11 11 C 1.46764 * 125.33565 * 359.97109 * 10 8 6 12 12 C 1.53976 * 106.68026 * 198.47185 * 11 10 8 13 13 H 1.09004 * 112.80002 * 94.14060 * 12 11 10 14 14 C 1.53671 * 109.30124 * 220.45178 * 12 11 10 15 15 N 1.46661 * 107.96953 * 93.06634 * 14 12 11 16 16 C 1.36943 * 125.33307 * 179.33435 * 15 14 12 17 17 H 1.07995 * 119.99865 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00006 * 180.02562 * 16 15 14 19 19 N 1.31623 * 120.00083 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00043 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47024 * 89.99392 * 20 18 16 22 22 H 1.48496 * 109.46841 * 209.99513 * 20 18 16 23 23 H 1.48496 * 109.46818 * 329.99523 * 20 18 16 24 24 C 1.46755 * 109.33388 * 359.29455 * 15 14 12 25 25 C 1.55437 * 103.39074 * 331.76599 * 12 11 10 26 26 H 1.09000 * 113.01186 * 149.86392 * 25 12 11 27 27 C 1.46658 * 125.33614 * 180.02562 * 10 8 6 28 28 H 1.09002 * 109.47316 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47253 * 300.00335 * 1 2 3 30 30 H 1.08997 * 109.47196 * 60.00160 * 1 2 3 31 31 H 1.08998 * 109.47116 * 240.00191 * 2 1 3 32 32 H 1.08997 * 109.47196 * 119.99840 * 2 1 3 33 33 H 1.08992 * 109.47762 * 205.67173 * 4 3 2 34 34 H 1.08998 * 109.46967 * 325.67711 * 4 3 2 35 35 H 1.08999 * 109.46770 * 85.67155 * 4 3 2 36 36 H 1.09001 * 117.49493 * 145.01681 * 5 3 2 37 37 H 1.09001 * 117.49619 * 359.97438 * 5 3 2 38 38 H 1.09000 * 110.01876 * 317.78110 * 11 10 8 39 39 H 1.09000 * 110.01460 * 79.12235 * 11 10 8 40 40 H 1.08991 * 109.77304 * 212.69872 * 14 12 11 41 41 H 1.09003 * 109.76313 * 333.42660 * 14 12 11 42 42 H 0.96999 * 119.99915 * 180.02562 * 19 18 16 43 43 H 1.08997 * 110.02222 * 137.75539 * 24 15 14 44 44 H 1.09003 * 110.01578 * 259.09783 * 24 15 14 45 45 H 1.09002 * 109.76683 * 298.89941 * 27 10 8 46 46 H 1.09004 * 109.76690 * 59.62487 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1852 2.4447 0.7783 5 6 2.7419 1.9437 -1.2639 6 6 3.5549 1.6562 -0.0006 7 1 4.1883 0.7691 -0.0006 8 6 4.0913 2.8379 0.7656 9 8 3.3291 3.5769 1.3520 10 7 5.4178 3.0734 0.7992 11 6 6.4418 2.2581 0.1352 12 6 7.7835 2.5982 0.8099 13 1 8.0353 1.9123 1.6187 14 6 8.8826 2.6849 -0.2606 15 7 8.9929 4.0849 -0.6835 16 6 9.8741 4.5634 -1.6161 17 1 10.5623 3.8894 -2.1046 18 6 9.8835 5.9148 -1.9330 19 7 9.0452 6.7362 -1.3373 20 14 11.0860 6.5676 -3.2047 21 1 10.4622 6.5104 -4.5510 22 1 11.4347 7.9741 -2.8800 23 1 12.3171 5.7373 -3.1939 24 6 8.0104 4.8924 0.0487 25 6 7.5818 4.0610 1.2952 26 1 8.1527 4.2943 2.1939 27 6 6.0645 4.1838 1.5060 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.3350 3.4442 0.3703 34 1 0.1339 2.1704 0.6911 35 1 1.4777 2.4333 1.8283 36 1 2.5945 2.9875 -1.5410 37 1 2.8406 1.2455 -2.0951 38 1 6.2171 1.1994 0.2640 39 1 6.4841 2.5039 -0.9259 40 1 9.8318 2.3503 0.1577 41 1 8.6159 2.0616 -1.1141 42 1 9.0515 7.6805 -1.5590 43 1 8.4624 5.8318 0.3671 44 1 7.1448 5.0905 -0.5835 45 1 5.7120 5.1330 1.1023 46 1 5.8343 4.1276 2.5700 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049148969.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:07 Heat of formation + Delta-G solvation = 15.178420 kcal Electronic energy + Delta-G solvation = -24272.243447 eV Core-core repulsion = 20970.152856 eV Total energy + Delta-G solvation = -3302.090591 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.43702 -39.00862 -37.08774 -34.93692 -32.49196 -32.17291 -30.31615 -29.47633 -28.07662 -25.95573 -25.46010 -24.28982 -23.84536 -22.23574 -20.18872 -19.50303 -19.18721 -18.37032 -17.24823 -16.76117 -15.77381 -15.35016 -15.03349 -14.71172 -14.65591 -14.20807 -13.69717 -13.43475 -13.29045 -13.11972 -12.69767 -12.59273 -12.32933 -12.25323 -12.05213 -11.80182 -11.74331 -11.70012 -11.37252 -11.23065 -10.95417 -10.92319 -10.82883 -10.45820 -10.14901 -10.12346 -10.07508 -9.88762 -9.79592 -9.55896 -9.27487 -8.65604 -8.30431 -6.87260 -5.70920 -3.10570 2.67939 3.17801 3.38013 3.42968 3.45138 3.76354 4.43833 4.46780 4.58516 4.72948 4.81322 4.88175 4.95327 5.12504 5.13258 5.27233 5.29827 5.47915 5.48436 5.55450 5.63871 5.66159 5.70738 5.72825 5.77113 5.86979 5.88580 5.91879 6.00661 6.02499 6.10240 6.16392 6.18621 6.27257 6.35936 6.50430 6.53943 6.58100 6.67185 6.82554 7.48552 7.60256 7.80237 7.80851 8.29645 8.41781 9.19125 9.79705 10.42811 11.35110 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.025941 B = 0.003480 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.098029 B = 8045.000069 C = 8177.447269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.087 4.087 3 C -0.092 4.092 4 C -0.107 4.107 5 C -0.145 4.145 6 C -0.182 4.182 7 H 0.119 0.881 8 C 0.555 3.445 9 O -0.543 6.543 10 N -0.605 5.605 11 C 0.113 3.887 12 C -0.110 4.110 13 H 0.087 0.913 14 C 0.146 3.854 15 N -0.602 5.602 16 C -0.227 4.227 17 H 0.078 0.922 18 C -0.009 4.009 19 N -0.921 5.921 20 Si 0.914 3.086 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.173 3.827 25 C -0.124 4.124 26 H 0.093 0.907 27 C 0.122 3.878 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.253 0.747 43 H 0.093 0.907 44 H 0.020 0.980 45 H 0.071 0.929 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.314 -12.998 4.026 18.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.124 4.124 3 C -0.093 4.093 4 C -0.164 4.164 5 C -0.182 4.182 6 C -0.203 4.203 7 H 0.137 0.863 8 C 0.344 3.656 9 O -0.421 6.421 10 N -0.338 5.338 11 C -0.010 4.010 12 C -0.129 4.129 13 H 0.105 0.895 14 C 0.020 3.980 15 N -0.328 5.328 16 C -0.355 4.355 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.569 5.569 20 Si 0.745 3.255 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.207 1.207 24 C 0.048 3.952 25 C -0.144 4.144 26 H 0.111 0.889 27 C -0.001 4.001 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.063 0.937 43 H 0.111 0.889 44 H 0.038 0.962 45 H 0.089 0.911 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.727 -12.404 4.232 18.269 hybrid contribution 0.902 0.275 -0.780 1.224 sum -11.826 -12.128 3.452 17.287 Atomic orbital electron populations 1.21825 0.95332 1.01318 1.02322 1.21085 0.96197 0.93151 1.01992 1.21596 0.90940 0.96886 0.99844 1.21447 0.97179 0.97380 1.00387 1.23189 1.01481 1.02929 0.90632 1.22303 0.95615 0.99176 1.03234 0.86293 1.19251 0.80429 0.85276 0.80655 1.90673 1.55926 1.49381 1.46145 1.48239 1.05331 1.28895 1.51336 1.22131 0.87009 0.94250 0.97630 1.22804 0.94460 0.97486 0.98192 0.89505 1.21065 0.94622 0.88612 0.93718 1.44229 1.40889 1.01306 1.46407 1.19050 1.10978 0.92039 1.13448 0.90373 1.24808 0.99406 0.96076 1.00201 1.69870 1.38823 1.03416 1.44797 0.86078 0.80352 0.78173 0.80914 1.21615 1.21638 1.20669 1.21830 0.91764 0.94450 0.87179 1.23556 0.93287 0.95977 1.01591 0.88924 1.21707 0.92476 0.89961 0.95936 0.92890 0.91989 0.92500 0.91704 0.91562 0.91767 0.92718 0.91587 0.88253 0.87974 0.91691 0.90762 0.95704 0.95724 0.93660 0.88926 0.96244 0.91064 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.92 37.16 0.33 -0.83 16 2 C -0.09 -0.77 6.12 -26.73 -0.16 -0.93 16 3 C -0.09 -1.04 2.47 -154.51 -0.38 -1.42 16 4 C -0.11 -1.33 7.73 37.16 0.29 -1.04 16 5 C -0.14 -1.67 9.52 -26.75 -0.25 -1.93 16 6 C -0.18 -2.32 5.24 -91.80 -0.48 -2.80 16 7 H 0.12 1.32 7.14 -51.93 -0.37 0.95 16 8 C 0.55 9.08 7.60 -10.99 -0.08 9.00 16 9 O -0.54 -10.21 13.41 5.56 0.07 -10.13 16 10 N -0.61 -10.01 3.31 -172.33 -0.57 -10.58 16 11 C 0.11 1.72 5.78 -3.39 -0.02 1.70 16 12 C -0.11 -1.79 4.05 -88.47 -0.36 -2.15 16 13 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 14 C 0.15 2.86 6.58 -3.61 -0.02 2.84 16 15 N -0.60 -14.90 3.38 -170.71 -0.58 -15.47 16 16 C -0.23 -6.18 10.25 -15.06 -0.15 -6.34 16 17 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 18 C -0.01 -0.25 5.48 -17.43 -0.10 -0.35 16 19 N -0.92 -26.61 10.16 55.49 0.56 -26.04 16 20 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C 0.17 4.08 4.94 -2.39 -0.01 4.06 16 25 C -0.12 -2.25 4.19 -87.46 -0.37 -2.62 16 26 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 27 C 0.12 2.11 6.22 -3.60 -0.02 2.09 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.49 6.45 -51.93 -0.33 0.15 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.92 7.01 -51.93 -0.36 0.55 16 34 H 0.05 0.56 5.58 -51.93 -0.29 0.27 16 35 H 0.07 0.92 7.26 -51.93 -0.38 0.54 16 36 H 0.10 1.27 8.05 -51.93 -0.42 0.85 16 37 H 0.10 0.98 8.05 -51.93 -0.42 0.56 16 38 H 0.06 0.80 7.16 -51.93 -0.37 0.43 16 39 H 0.07 1.27 7.58 -51.93 -0.39 0.88 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.02 0.47 7.64 -51.93 -0.40 0.08 16 42 H 0.25 7.12 8.31 -40.82 -0.34 6.79 16 43 H 0.09 2.48 6.19 -51.93 -0.32 2.16 16 44 H 0.02 0.51 7.65 -51.93 -0.40 0.11 16 45 H 0.07 1.36 7.69 -51.93 -0.40 0.96 16 46 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 350.71 15.07 5.29 5.29 Total: -1.00 -30.63 350.71 -9.81 -40.44 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -7.77 Total: 0.41 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -1.80 Total: -0.71 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -0.58 Total: -52.10 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.07 Total: -10.13 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.63 -9.81 -40.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049148969.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.623 kcal (2) G-P(sol) polarization free energy of solvation -30.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds