Wall clock time and date at job start Tue Mar 31 2020 07:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00139 * 2 1 4 4 C 1.53005 * 109.46952 * 359.97438 * 3 2 1 5 5 C 1.52997 * 109.47137 * 239.98309 * 3 2 1 6 6 C 1.50705 * 109.47154 * 119.98083 * 3 2 1 7 7 O 1.21276 * 119.99902 * 236.74467 * 6 3 2 8 8 N 1.34771 * 119.99799 * 56.74735 * 6 3 2 9 9 C 1.46802 * 119.57976 * 5.48960 * 8 6 3 10 10 C 1.53464 * 107.59491 * 232.05682 * 9 8 6 11 11 C 1.52735 * 108.44289 * 301.92052 * 10 9 8 12 12 C 1.53013 * 110.80211 * 63.76590 * 11 10 9 13 13 H 1.08999 * 111.38725 * 69.72943 * 12 11 10 14 14 C 1.45121 * 119.57568 * 185.22517 * 8 6 3 15 15 H 1.09002 * 109.97129 * 11.92305 * 14 8 6 16 16 C 1.54426 * 111.60075 * 248.64449 * 14 8 6 17 17 C 1.54571 * 102.44542 * 203.41442 * 16 14 8 18 18 N 1.48209 * 107.11332 * 191.93508 * 12 11 10 19 19 C 1.36938 * 125.76344 * 270.85941 * 18 12 11 20 20 H 1.08004 * 120.00193 * 0.02562 * 19 18 12 21 21 C 1.38813 * 120.00063 * 180.02562 * 19 18 12 22 22 N 1.31619 * 119.99822 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00194 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46922 * 90.00209 * 23 21 19 25 25 H 1.48501 * 109.47201 * 209.99578 * 23 21 19 26 26 H 1.48498 * 109.47223 * 330.00066 * 23 21 19 27 27 H 1.07997 * 120.00065 * 359.97438 * 1 2 3 28 28 H 1.08002 * 119.99623 * 180.02562 * 1 2 3 29 29 H 1.08003 * 119.99962 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47146 * 308.52090 * 4 3 2 31 31 H 1.09002 * 109.46807 * 68.52079 * 4 3 2 32 32 H 1.09001 * 109.47221 * 188.51967 * 4 3 2 33 33 H 1.08996 * 109.47317 * 173.94357 * 5 3 2 34 34 H 1.09001 * 109.46848 * 293.94560 * 5 3 2 35 35 H 1.09002 * 109.47195 * 53.94374 * 5 3 2 36 36 H 1.08999 * 109.83469 * 351.58316 * 9 8 6 37 37 H 1.09006 * 109.82683 * 112.53327 * 9 8 6 38 38 H 1.09000 * 109.63774 * 61.60727 * 10 9 8 39 39 H 1.09007 * 109.63881 * 182.23629 * 10 9 8 40 40 H 1.08999 * 109.21293 * 184.11087 * 11 10 9 41 41 H 1.09004 * 109.20859 * 303.47135 * 11 10 9 42 42 H 1.08993 * 110.81545 * 321.65470 * 16 14 8 43 43 H 1.08998 * 110.81073 * 85.18144 * 16 14 8 44 44 H 1.08994 * 109.88539 * 141.08467 * 17 16 14 45 45 H 1.08999 * 109.88754 * 262.10717 * 17 16 14 46 46 H 0.97002 * 120.00074 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4680 -0.0006 5 6 2.9435 1.3859 -1.2490 6 6 2.9296 1.3851 1.2307 7 8 2.8077 2.3159 1.9985 8 7 3.8396 0.4223 1.4781 9 6 4.0647 -0.6346 0.4843 10 6 3.9392 -1.9835 1.2053 11 6 4.9605 -2.0217 2.3403 12 6 4.6519 -0.9476 3.3854 13 1 3.7446 -1.1833 3.9416 14 6 4.5886 0.4468 2.7208 15 1 4.1465 1.1684 3.4078 16 6 6.0803 0.7654 2.4793 17 6 6.7568 0.1605 3.7306 18 7 5.8303 -0.8580 4.2798 19 6 6.0298 -1.5944 5.4170 20 1 5.2903 -2.3170 5.7290 21 6 7.1824 -1.4120 6.1686 22 7 8.0834 -0.5310 5.7886 23 14 7.4549 -2.4171 7.7195 24 1 8.1745 -3.6702 7.3772 25 1 8.2640 -1.6295 8.6840 26 1 6.1430 -2.7506 8.3301 27 1 -0.5400 0.9353 0.0004 28 1 -0.5399 -0.9354 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 0.3470 2.3281 -0.8049 31 1 0.5468 2.4998 0.9555 32 1 1.6057 3.4046 -0.1529 33 1 3.4053 2.3716 -1.3049 34 1 3.7203 0.6231 -1.1961 35 1 2.3316 1.2205 -2.1358 36 1 3.3159 -0.5659 -0.3047 37 1 5.0628 -0.5346 0.0578 38 1 2.9339 -2.0887 1.6133 39 1 4.1400 -2.7937 0.5042 40 1 4.9328 -3.0025 2.8149 41 1 5.9565 -1.8487 1.9324 42 1 6.4383 0.2788 1.5721 43 1 6.2438 1.8420 2.4331 44 1 7.7007 -0.3079 3.4518 45 1 6.9348 0.9413 4.4699 46 1 8.8890 -0.4038 6.3137 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049635235.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:44 Heat of formation + Delta-G solvation = 30.157589 kcal Electronic energy + Delta-G solvation = -25372.735030 eV Core-core repulsion = 22071.293984 eV Total energy + Delta-G solvation = -3301.441046 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.86645 -38.36129 -36.45689 -35.11031 -32.38285 -32.18373 -30.96533 -29.01535 -28.47900 -27.18687 -25.31392 -24.25372 -23.45991 -22.00213 -20.68905 -19.95887 -19.10587 -18.07522 -16.88373 -16.81669 -16.06440 -15.42292 -14.79687 -14.66194 -14.36067 -14.27027 -14.13867 -13.45164 -13.33834 -12.83912 -12.67110 -12.49282 -12.38024 -12.09698 -11.99996 -11.90090 -11.74209 -11.37050 -11.30409 -11.06014 -10.98549 -10.80888 -10.69559 -10.58322 -10.30723 -10.11557 -10.07139 -9.82872 -9.59693 -9.58430 -9.13270 -8.61990 -8.22053 -6.84740 -5.69843 -3.03594 2.02214 2.86197 3.24213 3.41087 3.46346 3.48191 4.42819 4.49737 4.52306 4.81064 4.89036 4.97369 5.09806 5.16953 5.27701 5.39304 5.44624 5.47361 5.53818 5.59035 5.61656 5.64146 5.69608 5.74055 5.84003 5.88858 5.95364 6.02115 6.12997 6.15106 6.24136 6.31206 6.37851 6.41860 6.53205 6.55062 6.61826 6.76439 7.01874 7.07924 7.55728 7.60696 7.68615 7.83309 8.22915 8.41513 9.20204 9.81079 10.47771 11.41783 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.028582 B = 0.004329 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.391613 B = 6466.901328 C = 6672.356549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.158 4.158 3 C -0.055 4.055 4 C -0.129 4.129 5 C -0.152 4.152 6 C 0.523 3.477 7 O -0.541 6.541 8 N -0.588 5.588 9 C 0.084 3.916 10 C -0.136 4.136 11 C -0.129 4.129 12 C 0.156 3.844 13 H 0.059 0.941 14 C 0.132 3.868 15 H 0.099 0.901 16 C -0.151 4.151 17 C 0.180 3.820 18 N -0.599 5.599 19 C -0.226 4.226 20 H 0.077 0.923 21 C -0.007 4.007 22 N -0.921 5.921 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.125 0.875 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.041 0.959 45 H 0.052 0.948 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.715 0.545 -16.548 20.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.176 4.176 3 C -0.058 4.058 4 C -0.187 4.187 5 C -0.209 4.209 6 C 0.310 3.690 7 O -0.418 6.418 8 N -0.319 5.319 9 C -0.038 4.038 10 C -0.175 4.175 11 C -0.169 4.169 12 C 0.048 3.952 13 H 0.077 0.923 14 C 0.028 3.972 15 H 0.117 0.883 16 C -0.190 4.190 17 C 0.055 3.945 18 N -0.324 5.324 19 C -0.354 4.354 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.569 5.569 23 Si 0.742 3.258 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 H 0.123 0.877 28 H 0.118 0.882 29 H 0.142 0.858 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.121 0.879 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.060 0.940 45 H 0.071 0.929 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.569 1.033 -15.906 19.695 hybrid contribution 0.386 -0.710 0.854 1.176 sum -11.183 0.323 -15.052 18.754 Atomic orbital electron populations 1.24079 0.95992 1.02385 0.99570 1.23094 0.96170 0.97121 1.01233 1.19869 0.95830 0.95662 0.94442 1.21746 0.98047 0.96528 1.02333 1.22166 0.99624 1.03433 0.95655 1.20393 0.80033 0.81823 0.86717 1.90677 1.69203 1.32929 1.48954 1.47546 1.38790 1.26212 1.19357 1.22480 1.02237 0.87425 0.91670 1.21979 1.00786 0.95982 0.98710 1.22114 0.98205 1.00833 0.95766 1.21421 0.91893 0.91325 0.90587 0.92332 1.21842 0.91768 0.99240 0.84391 0.88275 1.23084 0.95107 1.00321 1.00499 1.21354 0.91677 0.91394 0.90040 1.44973 1.17251 1.44566 1.25619 1.19035 1.03178 1.14730 0.98444 0.90483 1.24780 0.96996 0.99355 0.99191 1.69951 1.10462 1.36709 1.39765 0.86134 0.77672 0.79217 0.82826 1.21680 1.21697 1.20721 0.87679 0.88172 0.85754 0.91856 0.91552 0.91861 0.91700 0.90632 0.91355 0.87888 0.91371 0.91787 0.91379 0.92220 0.91879 0.92322 0.92059 0.94045 0.92943 0.93764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 13.71 29.01 0.40 -1.24 16 2 C -0.16 -1.59 7.77 -36.03 -0.28 -1.87 16 3 C -0.05 -0.62 0.73 -156.81 -0.11 -0.74 16 4 C -0.13 -1.40 6.59 37.16 0.24 -1.15 16 5 C -0.15 -1.39 8.09 37.16 0.30 -1.09 16 6 C 0.52 8.25 6.44 -10.99 -0.07 8.18 16 7 O -0.54 -10.67 15.24 5.56 0.08 -10.59 16 8 N -0.59 -9.10 2.72 -164.77 -0.45 -9.55 16 9 C 0.08 1.01 3.79 -3.64 -0.01 1.00 16 10 C -0.14 -1.72 5.72 -26.63 -0.15 -1.88 16 11 C -0.13 -2.24 5.10 -26.86 -0.14 -2.38 16 12 C 0.16 3.20 3.61 -66.14 -0.24 2.97 16 13 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 14 C 0.13 2.53 3.08 -67.08 -0.21 2.32 16 15 H 0.10 2.18 7.01 -51.93 -0.36 1.81 16 16 C -0.15 -2.95 6.08 -25.16 -0.15 -3.11 16 17 C 0.18 4.39 5.23 -2.26 -0.01 4.38 16 18 N -0.60 -15.08 2.94 -161.06 -0.47 -15.56 16 19 C -0.23 -6.24 10.30 -15.06 -0.16 -6.39 16 20 H 0.08 2.07 7.83 -52.48 -0.41 1.65 16 21 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 22 N -0.92 -27.10 10.36 55.49 0.57 -26.53 16 23 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 27 H 0.11 0.88 5.68 -52.49 -0.30 0.59 16 28 H 0.10 0.75 8.06 -52.49 -0.42 0.33 16 29 H 0.12 1.16 5.01 -52.48 -0.26 0.90 16 30 H 0.06 0.53 6.94 -51.93 -0.36 0.17 16 31 H 0.07 0.81 7.70 -51.93 -0.40 0.41 16 32 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.06 0.62 8.11 -51.93 -0.42 0.20 16 34 H 0.08 0.66 4.81 -51.93 -0.25 0.41 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.10 0.98 2.55 -51.93 -0.13 0.85 16 37 H 0.07 0.80 7.49 -51.93 -0.39 0.41 16 38 H 0.06 0.81 7.85 -51.93 -0.41 0.40 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.06 1.17 7.11 -51.93 -0.37 0.80 16 42 H 0.06 1.05 6.78 -51.93 -0.35 0.70 16 43 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.04 1.10 7.63 -51.93 -0.40 0.70 16 45 H 0.05 1.44 7.31 -51.93 -0.38 1.06 16 46 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 338.84 15.07 5.11 5.11 Total: -1.00 -31.60 338.84 -8.15 -39.75 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -7.28 Total: 1.48 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -0.69 Total: -1.27 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: -0.35 Total: -51.64 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.08 Total: -10.59 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.60 -8.15 -39.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049635235.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.905 kcal (2) G-P(sol) polarization free energy of solvation -31.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds