Wall clock time and date at job start Tue Mar 31 2020 07:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50704 * 119.99829 * 2 1 4 4 C 1.52996 * 109.47021 * 5.14557 * 3 2 1 5 5 C 1.52998 * 109.46714 * 245.14904 * 3 2 1 6 6 C 1.50695 * 109.47083 * 125.15082 * 3 2 1 7 7 O 1.21286 * 119.99889 * 244.77170 * 6 3 2 8 8 N 1.34777 * 120.00564 * 64.77375 * 6 3 2 9 9 C 1.47852 * 122.22341 * 354.77963 * 8 6 3 10 10 C 1.52714 * 111.06298 * 232.51164 * 9 8 6 11 11 C 1.53867 * 111.51892 * 311.46667 * 10 9 8 12 12 C 1.50811 * 107.41717 * 56.71145 * 11 10 9 13 13 H 1.09002 * 107.79949 * 51.23442 * 12 11 10 14 14 C 1.45724 * 122.22952 * 174.80764 * 8 6 3 15 15 H 1.09003 * 111.07191 * 241.37757 * 14 8 6 16 16 C 1.53435 * 116.36811 * 9.88216 * 14 8 6 17 17 C 1.55465 * 101.67166 * 152.71968 * 16 14 8 18 18 N 1.45022 * 119.38104 * 175.79144 * 12 11 10 19 19 C 1.36932 * 126.55863 * 331.77951 * 18 12 11 20 20 H 1.08001 * 120.00090 * 359.44253 * 19 18 12 21 21 C 1.38809 * 120.00148 * 179.71237 * 19 18 12 22 22 N 1.31622 * 119.99997 * 359.72964 * 21 19 18 23 23 Si 1.86800 * 120.00496 * 179.72756 * 21 19 18 24 24 H 1.48502 * 109.46861 * 89.99826 * 23 21 19 25 25 H 1.48496 * 109.47300 * 209.99991 * 23 21 19 26 26 H 1.48502 * 109.47171 * 330.00302 * 23 21 19 27 27 H 1.07999 * 120.00361 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.99950 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.00361 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46851 * 175.01720 * 4 3 2 31 31 H 1.08992 * 109.47601 * 295.01855 * 4 3 2 32 32 H 1.09006 * 109.47408 * 55.02507 * 4 3 2 33 33 H 1.08997 * 109.47342 * 305.04180 * 5 3 2 34 34 H 1.08993 * 109.47674 * 65.04347 * 5 3 2 35 35 H 1.09006 * 109.46749 * 185.04262 * 5 3 2 36 36 H 1.09006 * 109.15734 * 352.91856 * 9 8 6 37 37 H 1.08997 * 109.16018 * 112.15654 * 9 8 6 38 38 H 1.08998 * 109.06770 * 71.99394 * 10 9 8 39 39 H 1.09002 * 109.07123 * 190.93987 * 10 9 8 40 40 H 1.09005 * 109.88024 * 176.38970 * 11 10 9 41 41 H 1.08998 * 109.88611 * 297.39242 * 11 10 9 42 42 H 1.09002 * 110.98743 * 34.62366 * 16 14 8 43 43 H 1.08994 * 111.01981 * 270.83444 * 16 14 8 44 44 H 1.09000 * 109.96118 * 218.02553 * 17 16 14 45 45 H 1.09000 * 109.98956 * 96.80114 * 17 16 14 46 46 H 0.96994 * 120.00426 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 1.0742 2.4651 0.1294 5 6 2.8434 1.4436 -1.3089 6 6 3.0230 1.3312 1.1617 7 8 2.8729 2.1386 2.0542 8 7 4.0480 0.4574 1.2089 9 6 4.2129 -0.6192 0.2090 10 6 4.3726 -1.9782 0.8869 11 6 5.4198 -1.9276 2.0131 12 6 4.9891 -0.8553 2.9822 13 1 3.9488 -1.0440 3.2472 14 6 5.0670 0.5103 2.2493 15 1 6.0542 0.6871 1.8223 16 6 4.7936 1.4595 3.4234 17 6 5.5908 0.7781 4.5710 18 7 5.7492 -0.6499 4.2000 19 6 6.4783 -1.5920 4.8751 20 1 6.5175 -2.6079 4.5105 21 6 7.1625 -1.2429 6.0313 22 7 7.1148 -0.0049 6.4758 23 14 8.1509 -2.5298 6.9566 24 1 9.5421 -2.5530 6.4374 25 1 8.1679 -2.1952 8.4032 26 1 7.5286 -3.8644 6.7644 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.6232 3.4026 0.2184 31 1 0.4371 2.4996 -0.7543 32 1 0.4576 2.3196 1.0164 33 1 3.4832 0.5717 -1.4447 34 1 2.1447 1.5148 -2.1425 35 1 3.4580 2.3432 -1.2722 36 1 3.3365 -0.6432 -0.4387 37 1 5.0977 -0.4149 -0.3939 38 1 3.4133 -2.2820 1.3059 39 1 4.6839 -2.7125 0.1439 40 1 5.4663 -2.8917 2.5197 41 1 6.3972 -1.6789 1.5997 42 1 3.7293 1.4964 3.6558 43 1 5.1809 2.4573 3.2178 44 1 5.0389 0.8602 5.5073 45 1 6.5696 1.2466 4.6739 46 1 7.5932 0.2393 7.2834 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049635237.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:50 Heat of formation + Delta-G solvation = 32.546680 kcal Electronic energy + Delta-G solvation = -25444.949904 eV Core-core repulsion = 22143.612457 eV Total energy + Delta-G solvation = -3301.337447 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 2.92 seconds Orbital eigenvalues (eV) -40.77320 -38.28820 -36.40352 -35.24454 -32.60505 -32.14278 -30.91389 -28.90689 -28.44945 -27.17150 -25.28207 -24.43700 -23.28669 -21.49979 -20.82005 -20.08032 -19.48281 -18.19757 -16.78375 -16.35438 -15.69489 -15.38577 -15.05676 -14.62139 -14.56036 -14.30407 -13.77690 -13.46408 -13.38810 -12.98053 -12.55536 -12.52414 -12.37650 -12.30215 -12.13489 -11.72950 -11.66839 -11.55401 -11.27957 -11.13325 -10.83295 -10.82717 -10.55476 -10.42175 -10.32165 -10.06358 -9.92909 -9.81385 -9.69969 -9.58220 -8.77979 -8.51723 -8.16962 -6.78963 -5.66836 -3.01057 2.04446 2.92917 3.23995 3.41874 3.46672 3.48945 4.43069 4.52196 4.56325 4.80726 4.83418 4.94643 5.09327 5.14701 5.28945 5.39043 5.46270 5.47770 5.51271 5.60657 5.64153 5.66934 5.72161 5.80375 5.86997 5.90563 5.96557 6.04085 6.12786 6.18740 6.29481 6.33685 6.42313 6.43442 6.56574 6.60823 6.76587 6.83229 6.94418 7.24864 7.61838 7.70001 7.77996 7.88278 8.28632 8.49907 9.22657 9.86611 10.55415 11.45146 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.027630 B = 0.004560 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.139859 B = 6138.756887 C = 6615.395598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.155 4.155 3 C -0.056 4.056 4 C -0.128 4.128 5 C -0.147 4.147 6 C 0.530 3.470 7 O -0.529 6.529 8 N -0.596 5.596 9 C 0.093 3.907 10 C -0.131 4.131 11 C -0.116 4.116 12 C 0.160 3.840 13 H 0.015 0.985 14 C 0.116 3.884 15 H 0.078 0.922 16 C -0.133 4.133 17 C 0.173 3.827 18 N -0.592 5.592 19 C -0.226 4.226 20 H 0.078 0.922 21 C -0.007 4.007 22 N -0.920 5.920 23 Si 0.910 3.090 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.120 0.880 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.096 0.904 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.086 0.914 43 H 0.058 0.942 44 H 0.038 0.962 45 H 0.055 0.945 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.068 0.227 -17.913 20.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.173 4.173 3 C -0.060 4.060 4 C -0.185 4.185 5 C -0.204 4.204 6 C 0.317 3.683 7 O -0.406 6.406 8 N -0.328 5.328 9 C -0.029 4.029 10 C -0.170 4.170 11 C -0.154 4.154 12 C 0.051 3.949 13 H 0.033 0.967 14 C 0.012 3.988 15 H 0.096 0.904 16 C -0.171 4.171 17 C 0.048 3.952 18 N -0.317 5.317 19 C -0.354 4.354 20 H 0.096 0.904 21 C -0.204 4.204 22 N -0.567 5.567 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.208 1.208 27 H 0.123 0.877 28 H 0.118 0.882 29 H 0.138 0.862 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.105 0.895 43 H 0.077 0.923 44 H 0.057 0.943 45 H 0.074 0.926 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.024 0.668 -17.201 19.920 hybrid contribution 0.669 -0.829 0.539 1.194 sum -9.355 -0.161 -16.663 19.110 Atomic orbital electron populations 1.24041 0.95938 1.02361 0.99618 1.22968 0.96143 0.96953 1.01241 1.19921 0.95512 0.95607 0.94912 1.21719 0.98153 0.96877 1.01765 1.22095 1.00221 1.03216 0.94901 1.20251 0.80772 0.80417 0.86855 1.90682 1.72873 1.38971 1.38030 1.47915 1.25887 1.30044 1.28979 1.22212 1.02483 0.87186 0.91029 1.21933 1.00438 0.95945 0.98670 1.21382 0.97889 1.00533 0.95623 1.20606 0.94985 0.91968 0.87384 0.96735 1.22333 0.89476 0.99526 0.87443 0.90446 1.23024 1.02584 0.96933 0.94608 1.21737 0.97824 0.82671 0.92972 1.44076 1.56988 1.07156 1.23442 1.18985 1.22019 0.90078 1.04336 0.90410 1.24799 1.00690 0.96577 0.98296 1.69951 1.46281 1.16243 1.24224 0.86153 0.80068 0.80511 0.79226 1.21652 1.21702 1.20760 0.87668 0.88215 0.86241 0.91697 0.92101 0.91607 0.90892 0.91577 0.91860 0.88619 0.91679 0.91904 0.90938 0.91507 0.91866 0.89536 0.92331 0.94330 0.92638 0.93752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 13.69 29.02 0.40 -1.30 16 2 C -0.16 -1.62 7.84 -36.02 -0.28 -1.90 16 3 C -0.06 -0.65 0.73 -156.82 -0.11 -0.77 16 4 C -0.13 -1.41 6.44 37.16 0.24 -1.17 16 5 C -0.15 -1.35 8.10 37.16 0.30 -1.05 16 6 C 0.53 8.47 6.47 -10.99 -0.07 8.40 16 7 O -0.53 -10.41 12.71 5.55 0.07 -10.34 16 8 N -0.60 -9.35 2.90 -164.19 -0.48 -9.83 16 9 C 0.09 1.10 4.17 -3.45 -0.01 1.09 16 10 C -0.13 -1.65 5.92 -26.43 -0.16 -1.81 16 11 C -0.12 -1.99 5.45 -27.38 -0.15 -2.14 16 12 C 0.16 3.39 2.56 -68.67 -0.18 3.21 16 13 H 0.02 0.35 8.01 -51.93 -0.42 -0.07 16 14 C 0.12 2.25 3.32 -66.97 -0.22 2.03 16 15 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 16 C -0.13 -2.90 5.11 -25.20 -0.13 -3.03 16 17 C 0.17 4.45 5.47 -1.70 -0.01 4.44 16 18 N -0.59 -15.41 3.35 -163.64 -0.55 -15.96 16 19 C -0.23 -6.30 9.95 -15.06 -0.15 -6.45 16 20 H 0.08 2.08 7.31 -52.49 -0.38 1.69 16 21 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 22 N -0.92 -27.55 10.46 55.49 0.58 -26.97 16 23 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H 0.11 0.91 5.72 -52.49 -0.30 0.61 16 28 H 0.10 0.79 8.06 -52.49 -0.42 0.37 16 29 H 0.12 1.18 5.79 -52.49 -0.30 0.87 16 30 H 0.06 0.77 8.03 -51.93 -0.42 0.36 16 31 H 0.06 0.52 7.57 -51.93 -0.39 0.12 16 32 H 0.06 0.80 7.43 -51.93 -0.39 0.41 16 33 H 0.07 0.61 4.81 -51.93 -0.25 0.36 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 0.90 2.76 -51.93 -0.14 0.76 16 37 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 38 H 0.06 0.81 8.13 -51.93 -0.42 0.38 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.20 7.70 -51.93 -0.40 0.80 16 41 H 0.06 1.09 8.12 -51.93 -0.42 0.67 16 42 H 0.09 2.00 6.04 -51.93 -0.31 1.68 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.04 1.09 7.81 -51.93 -0.41 0.69 16 45 H 0.06 1.55 7.18 -51.93 -0.37 1.18 16 46 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 338.59 15.07 5.10 5.10 Total: -1.00 -32.26 338.59 -8.35 -40.61 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -7.42 Total: 0.87 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -0.63 Total: -0.74 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: -0.44 Total: -52.76 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.07 Total: -10.34 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.26 -8.35 -40.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049635237.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.157 kcal (2) G-P(sol) polarization free energy of solvation -32.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.92 seconds