Wall clock time and date at job start Tue Mar 31 2020 06:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.46971 * 2 1 4 4 C 1.50696 * 115.55410 * 64.85485 * 3 2 1 5 5 O 1.21285 * 119.99703 * 251.31040 * 4 3 2 6 6 N 1.34776 * 120.00326 * 71.29915 * 4 3 2 7 7 C 1.46799 * 119.57640 * 356.71037 * 6 4 3 8 8 C 1.55183 * 106.30915 * 234.48359 * 7 6 4 9 9 C 1.52739 * 107.33023 * 299.66246 * 8 7 6 10 10 C 1.53010 * 110.80061 * 65.33727 * 9 8 7 11 11 H 1.08999 * 111.38745 * 68.76006 * 10 9 8 12 12 C 1.45117 * 119.57523 * 176.97395 * 6 4 3 13 13 H 1.09003 * 109.97472 * 11.00870 * 12 6 4 14 14 C 1.54417 * 111.60780 * 248.63522 * 12 6 4 15 15 C 1.55473 * 102.03430 * 204.05460 * 14 12 6 16 16 N 1.47119 * 107.60093 * 20.48068 * 15 14 12 17 17 C 1.36935 * 125.76766 * 183.35672 * 16 15 14 18 18 H 1.08005 * 119.99837 * 187.75336 * 17 16 15 19 19 C 1.38817 * 119.99985 * 7.75143 * 17 16 15 20 20 N 1.31615 * 120.00075 * 17.01319 * 19 17 16 21 21 Si 1.86795 * 119.99871 * 197.01459 * 19 17 16 22 22 H 1.48501 * 109.47250 * 94.72636 * 21 19 17 23 23 H 1.48496 * 109.47159 * 214.72710 * 21 19 17 24 24 H 1.48500 * 109.47193 * 334.72882 * 21 19 17 25 25 C 1.53001 * 117.49729 * 279.17768 * 3 2 1 26 26 C 1.53004 * 117.49547 * 210.51865 * 3 2 1 27 27 H 1.09006 * 109.47308 * 172.44150 * 1 2 3 28 28 H 1.08995 * 109.47992 * 292.44250 * 1 2 3 29 29 H 1.09003 * 109.46876 * 52.44767 * 1 2 3 30 30 H 1.09000 * 109.47574 * 239.99306 * 2 1 3 31 31 H 1.09006 * 109.47074 * 119.99608 * 2 1 3 32 32 H 1.09008 * 109.83022 * 351.58383 * 7 6 4 33 33 H 1.08994 * 109.83965 * 112.53819 * 7 6 4 34 34 H 1.08997 * 108.88124 * 181.05571 * 8 7 6 35 35 H 1.08998 * 111.66538 * 59.85019 * 8 7 6 36 36 H 1.09004 * 109.21179 * 304.99946 * 9 8 7 37 37 H 1.08996 * 109.21584 * 185.67970 * 9 8 7 38 38 H 1.09002 * 110.81438 * 321.66623 * 14 12 6 39 39 H 1.09005 * 110.81554 * 85.18887 * 14 12 6 40 40 H 1.09007 * 109.10274 * 261.30198 * 15 14 12 41 41 H 1.09000 * 110.45062 * 140.42851 * 15 14 12 42 42 H 0.96999 * 120.00071 * 180.02562 * 20 19 17 43 43 H 1.08997 * 117.49974 * 0.02562 * 25 3 2 44 44 H 1.08999 * 117.49873 * 145.01889 * 25 3 2 45 45 H 1.09000 * 117.50055 * 214.97133 * 26 3 2 46 46 H 1.09000 * 117.49902 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.7119 2.2479 1.2307 5 8 0.8901 3.1380 1.1717 6 7 2.3316 1.9791 2.3970 7 6 3.2705 0.8535 2.4760 8 6 2.7826 -0.0396 3.6475 9 6 2.8156 0.8133 4.9142 10 6 1.8040 1.9578 4.8250 11 1 0.7798 1.5865 4.8575 12 6 2.0576 2.8026 3.5600 13 1 1.2016 3.4488 3.3655 14 6 3.2835 3.6545 3.9551 15 6 3.0203 3.9211 5.4640 16 7 2.0779 2.8962 5.9391 17 6 1.5436 2.8219 7.1977 18 1 0.9586 1.9611 7.4861 19 6 1.7540 3.8531 8.1030 20 7 2.1636 5.0292 7.6772 21 14 1.4559 3.5714 9.9253 22 1 2.7337 3.1998 10.5844 23 1 0.9263 4.8159 10.5385 24 1 0.4706 2.4745 10.1020 25 6 2.0713 2.1807 -1.3398 26 6 3.3777 1.7188 -0.6892 27 1 -0.3634 -1.0188 -0.1352 28 1 -0.3635 0.3923 0.9497 29 1 -0.3633 0.6264 -0.8148 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.2264 0.2698 1.5564 33 1 4.2830 1.2264 2.6299 34 1 3.4646 -0.8829 3.7559 35 1 1.7701 -0.4065 3.4792 36 1 3.8157 1.2277 5.0416 37 1 2.5750 0.1882 5.7740 38 1 4.2064 3.0898 3.8232 39 1 3.3109 4.5823 3.3835 40 1 2.5802 4.9117 5.5798 41 1 3.9502 3.8604 6.0293 42 1 2.3110 5.7496 8.3098 43 1 1.7282 1.6388 -2.2211 44 1 1.8549 3.2489 -1.3310 45 1 4.0202 2.4835 -0.2528 46 1 3.8946 0.8728 -1.1422 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049702523.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:13 Heat of formation + Delta-G solvation = 15.451435 kcal Electronic energy + Delta-G solvation = -25258.041949 eV Core-core repulsion = 21955.963196 eV Total energy + Delta-G solvation = -3302.078753 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 3.75 seconds Orbital eigenvalues (eV) -40.66083 -38.52714 -36.68729 -35.15741 -32.33798 -32.22238 -31.96931 -29.04932 -28.24239 -25.46207 -24.38301 -24.13211 -22.61634 -22.26262 -21.83304 -20.09852 -19.26619 -17.98665 -16.85638 -16.66107 -16.00150 -15.54144 -14.76577 -14.62771 -14.35238 -14.19526 -13.96584 -13.54344 -13.41384 -13.26965 -12.84451 -12.49324 -12.39546 -12.10731 -11.91329 -11.72605 -11.62638 -11.42548 -11.25490 -11.04539 -10.96770 -10.76377 -10.62441 -10.50705 -10.41215 -10.21279 -10.07384 -9.95981 -9.67008 -9.59532 -9.34667 -8.63836 -8.21513 -6.83748 -5.68829 -3.07069 2.76975 3.15338 3.41024 3.46879 3.48818 3.58442 4.38426 4.49223 4.54445 4.68253 4.76715 4.97651 5.16788 5.21471 5.25595 5.30469 5.39211 5.42866 5.44904 5.49518 5.57793 5.61325 5.66585 5.71834 5.81040 5.85642 5.88645 5.95779 5.98397 6.01846 6.11965 6.19312 6.20792 6.32454 6.37326 6.50208 6.61817 6.75316 7.00019 7.07892 7.38656 7.66177 7.69382 7.81689 8.26074 8.44094 9.17677 9.80801 10.47170 11.37078 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.028426 B = 0.004311 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.792016 B = 6492.991902 C = 6726.424336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.084 4.084 3 C -0.153 4.153 4 C 0.546 3.454 5 O -0.540 6.540 6 N -0.588 5.588 7 C 0.103 3.897 8 C -0.132 4.132 9 C -0.130 4.130 10 C 0.156 3.844 11 H 0.058 0.942 12 C 0.130 3.870 13 H 0.100 0.900 14 C -0.147 4.147 15 C 0.163 3.837 16 N -0.592 5.592 17 C -0.230 4.230 18 H 0.078 0.922 19 C -0.005 4.005 20 N -0.911 5.911 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.280 1.280 25 C -0.145 4.145 26 C -0.163 4.163 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.022 0.978 42 H 0.252 0.748 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.097 0.903 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.803 -11.127 -16.746 20.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.121 4.121 3 C -0.156 4.156 4 C 0.333 3.667 5 O -0.417 6.417 6 N -0.319 5.319 7 C -0.020 4.020 8 C -0.171 4.171 9 C -0.170 4.170 10 C 0.048 3.952 11 H 0.076 0.924 12 C 0.025 3.975 13 H 0.118 0.882 14 C -0.187 4.187 15 C 0.038 3.962 16 N -0.316 5.316 17 C -0.358 4.358 18 H 0.096 0.904 19 C -0.203 4.203 20 N -0.557 5.557 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.219 1.219 24 H -0.206 1.206 25 C -0.183 4.183 26 C -0.200 4.200 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.041 0.959 42 H 0.063 0.937 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.116 0.884 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.341 -10.475 -16.529 19.852 hybrid contribution 0.042 -0.102 1.106 1.111 sum 3.383 -10.577 -15.423 19.005 Atomic orbital electron populations 1.21718 0.94916 1.01414 1.02721 1.21182 0.96687 0.91585 1.02683 1.21455 1.03357 0.97466 0.93347 1.19540 0.80563 0.83185 0.83398 1.90686 1.33507 1.32628 1.84846 1.47584 1.43182 1.31297 1.09818 1.22336 0.92764 0.87098 0.99811 1.22227 1.01222 0.97649 0.95971 1.22077 1.01288 0.97677 0.95923 1.21333 0.96353 0.90378 0.87170 0.92412 1.21807 0.99166 0.92367 0.84122 0.88189 1.23165 0.96920 0.98819 0.99751 1.21482 0.92856 0.95085 0.86818 1.44700 1.50633 1.28440 1.07830 1.19008 1.28351 1.02407 0.86079 0.90448 1.24765 1.02020 0.95064 0.98408 1.69971 1.51891 1.01162 1.32664 0.86170 0.77630 0.77023 0.85415 1.21696 1.21878 1.20574 1.22976 0.99887 1.01290 0.94115 1.23127 0.90200 1.03708 1.02960 0.92540 0.92487 0.92345 0.91081 0.90583 0.89610 0.91028 0.91629 0.91467 0.91994 0.92274 0.92489 0.91948 0.90778 0.95944 0.93743 0.88123 0.88064 0.88425 0.87959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.68 37.15 0.36 -1.19 16 2 C -0.08 -0.78 5.38 -26.73 -0.14 -0.93 16 3 C -0.15 -1.74 0.73 -155.66 -0.11 -1.86 16 4 C 0.55 8.69 6.40 -10.99 -0.07 8.62 16 5 O -0.54 -10.86 16.16 5.55 0.09 -10.77 16 6 N -0.59 -9.16 2.69 -163.95 -0.44 -9.60 16 7 C 0.10 1.25 5.61 -2.72 -0.02 1.23 16 8 C -0.13 -1.69 6.20 -25.71 -0.16 -1.85 16 9 C -0.13 -2.22 5.12 -26.86 -0.14 -2.36 16 10 C 0.16 3.22 3.54 -66.35 -0.23 2.98 16 11 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 12 C 0.13 2.50 3.06 -67.29 -0.21 2.29 16 13 H 0.10 2.24 6.93 -51.93 -0.36 1.88 16 14 C -0.15 -2.87 6.21 -24.67 -0.15 -3.02 16 15 C 0.16 3.95 5.59 -2.39 -0.01 3.94 16 16 N -0.59 -14.90 2.95 -161.62 -0.48 -15.37 16 17 C -0.23 -6.37 10.22 -15.06 -0.15 -6.52 16 18 H 0.08 2.08 7.89 -52.48 -0.41 1.67 16 19 C -0.01 -0.15 5.36 -17.43 -0.09 -0.24 16 20 N -0.91 -26.83 10.73 55.49 0.60 -26.24 16 21 Si 0.91 22.11 29.59 -169.99 -5.03 17.08 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C -0.15 -1.49 9.80 -26.69 -0.26 -1.75 16 26 C -0.16 -1.49 9.45 -26.69 -0.25 -1.74 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.72 7.94 -51.93 -0.41 0.31 16 29 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 30 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 31 H 0.08 0.69 6.02 -51.93 -0.31 0.38 16 32 H 0.09 0.84 4.07 -51.92 -0.21 0.63 16 33 H 0.07 0.85 7.54 -51.93 -0.39 0.46 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 1.12 7.29 -51.93 -0.38 0.74 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 1.01 6.94 -51.93 -0.36 0.64 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.07 2.04 6.56 -51.92 -0.34 1.70 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.10 1.20 8.10 -51.93 -0.42 0.78 16 45 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 351.02 15.07 5.29 5.29 Total: -1.00 -31.58 351.02 -9.43 -41.00 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -7.81 Total: 1.00 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -1.65 Total: -2.40 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -0.32 Total: -51.21 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.58 -9.43 -41.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049702523.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.456 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.75 seconds