Wall clock time and date at job start Tue Mar 31 2020 06:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46926 * 2 1 4 4 C 1.50700 * 115.55148 * 65.50906 * 3 2 1 5 5 O 1.21274 * 119.99999 * 249.36370 * 4 3 2 6 6 N 1.34780 * 119.99637 * 69.36740 * 4 3 2 7 7 C 1.47849 * 122.23403 * 356.01547 * 6 4 3 8 8 C 1.52621 * 111.57592 * 231.60379 * 7 6 4 9 9 C 1.53875 * 111.90516 * 312.83888 * 8 7 6 10 10 C 1.51077 * 107.34484 * 55.96561 * 9 8 7 11 11 H 1.09002 * 108.74024 * 51.47086 * 10 9 8 12 12 C 1.45723 * 122.22598 * 176.29608 * 6 4 3 13 13 H 1.08994 * 111.07528 * 240.52378 * 12 6 4 14 14 C 1.53433 * 116.37864 * 9.02504 * 12 6 4 15 15 C 1.56411 * 101.24538 * 152.28756 * 14 12 6 16 16 N 1.45023 * 118.75886 * 176.40207 * 10 9 8 17 17 C 1.36940 * 126.56048 * 330.96359 * 16 10 9 18 18 H 1.07997 * 119.99837 * 0.02562 * 17 16 10 19 19 C 1.38812 * 119.99878 * 180.02562 * 17 16 10 20 20 N 1.31617 * 120.00291 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99839 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46839 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46973 * 120.00131 * 21 19 17 24 24 H 1.48499 * 109.46888 * 239.99976 * 21 19 17 25 25 C 1.53005 * 117.49839 * 279.83708 * 3 2 1 26 26 C 1.53002 * 117.49687 * 211.17563 * 3 2 1 27 27 H 1.08996 * 109.47259 * 295.86257 * 1 2 3 28 28 H 1.09002 * 109.47205 * 55.86855 * 1 2 3 29 29 H 1.09000 * 109.47108 * 175.86161 * 1 2 3 30 30 H 1.08994 * 109.47239 * 239.99875 * 2 1 3 31 31 H 1.09006 * 109.46868 * 120.00213 * 2 1 3 32 32 H 1.09000 * 109.15690 * 352.88604 * 7 6 4 33 33 H 1.09000 * 109.16214 * 112.07379 * 7 6 4 34 34 H 1.09000 * 109.64021 * 191.68034 * 8 7 6 35 35 H 1.08997 * 108.04867 * 72.92839 * 8 7 6 36 36 H 1.08995 * 109.88445 * 296.50050 * 9 8 7 37 37 H 1.09005 * 109.87943 * 175.42144 * 9 8 7 38 38 H 1.09002 * 110.98959 * 270.83078 * 14 12 6 39 39 H 1.09005 * 110.98812 * 34.63518 * 14 12 6 40 40 H 1.09000 * 110.32600 * 218.65262 * 15 14 12 41 41 H 1.08993 * 109.31264 * 97.63015 * 15 14 12 42 42 H 0.96996 * 120.00361 * 179.97438 * 20 19 17 43 43 H 1.09001 * 117.49795 * 0.02562 * 25 3 2 44 44 H 1.08998 * 117.49418 * 145.02051 * 25 3 2 45 45 H 1.08992 * 117.50199 * 214.97676 * 26 3 2 46 46 H 1.09005 * 117.49711 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7252 2.2432 1.2373 5 8 0.9290 3.1563 1.1824 6 7 2.3287 1.9445 2.4048 7 6 3.2408 0.7897 2.5483 8 6 2.8493 -0.0910 3.7317 9 6 2.5784 0.7380 4.9994 10 6 1.5147 1.7539 4.6545 11 1 0.6726 1.2367 4.1944 12 6 2.1211 2.7348 3.6114 13 1 3.0588 3.1624 3.9661 14 6 1.0169 3.7983 3.5481 15 6 0.5913 3.8858 5.0507 16 7 1.0118 2.6209 5.7026 17 6 0.9392 2.3284 7.0384 18 1 1.2780 1.3689 7.4002 19 6 0.4302 3.2652 7.9274 20 7 0.0169 4.4343 7.4864 21 14 0.3319 2.8664 9.7498 22 1 0.8567 1.4974 9.9858 23 1 1.1438 3.8461 10.5153 24 1 -1.0823 2.9389 10.1967 25 6 2.0568 2.1858 -1.3372 26 6 3.3702 1.7215 -0.7026 27 1 -0.3633 0.4483 0.9247 28 1 -0.3634 0.5766 -0.8507 29 1 -0.3633 -1.0250 -0.0742 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.2192 0.2008 1.6313 33 1 4.2547 1.1532 2.7153 34 1 3.6470 -0.8049 3.9368 35 1 1.9445 -0.6358 3.4624 36 1 3.4902 1.2473 5.3112 37 1 2.2242 0.0874 5.7991 38 1 1.4103 4.7485 3.1870 39 1 0.1853 3.4613 2.9292 40 1 -0.4891 4.0049 5.1318 41 1 1.0949 4.7312 5.5193 42 1 -0.3391 5.0888 8.1075 43 1 1.7042 1.6473 -2.2169 44 1 1.8406 3.2540 -1.3219 45 1 4.0174 2.4844 -0.2702 46 1 3.8822 0.8772 -1.1644 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049702524.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:31 Heat of formation + Delta-G solvation = 23.252985 kcal Electronic energy + Delta-G solvation = -25385.798971 eV Core-core repulsion = 22084.058519 eV Total energy + Delta-G solvation = -3301.740452 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -40.61324 -38.46017 -36.59793 -35.30304 -32.56822 -32.15385 -31.93159 -28.96598 -28.19659 -25.46134 -24.48429 -24.04503 -22.60501 -21.93621 -21.41995 -20.49757 -19.55788 -18.14899 -16.69735 -16.24378 -15.57587 -15.48571 -15.04374 -14.67594 -14.34127 -14.28770 -13.91295 -13.61724 -13.42998 -13.10657 -12.83231 -12.40720 -12.39151 -12.23346 -11.86147 -11.67683 -11.60827 -11.51865 -11.25319 -11.03428 -10.84181 -10.67000 -10.57865 -10.41673 -10.29747 -10.10722 -10.05101 -9.92747 -9.79803 -9.58734 -8.86925 -8.54143 -8.16295 -6.79657 -5.67385 -3.01636 2.81780 3.15822 3.41518 3.46436 3.49282 3.60685 4.40267 4.51476 4.55640 4.70000 4.77695 4.93092 5.11530 5.22082 5.27118 5.33982 5.40074 5.44677 5.49698 5.50592 5.59399 5.65313 5.73676 5.79863 5.85034 5.87658 5.89728 5.98529 5.99971 6.05549 6.14193 6.23028 6.29631 6.32198 6.43431 6.60314 6.76058 6.81987 6.94060 7.24520 7.61829 7.69386 7.78404 7.87915 8.27980 8.51430 9.22212 9.86115 10.54806 11.44645 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.027001 B = 0.004560 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.747109 B = 6138.754961 C = 6532.057107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.084 4.084 3 C -0.154 4.154 4 C 0.554 3.446 5 O -0.529 6.529 6 N -0.594 5.594 7 C 0.107 3.893 8 C -0.130 4.130 9 C -0.115 4.115 10 C 0.160 3.840 11 H 0.017 0.983 12 C 0.116 3.884 13 H 0.077 0.923 14 C -0.134 4.134 15 C 0.173 3.827 16 N -0.593 5.593 17 C -0.225 4.225 18 H 0.079 0.921 19 C -0.007 4.007 20 N -0.919 5.919 21 Si 0.909 3.091 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.145 4.145 26 C -0.163 4.163 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.086 0.914 40 H 0.039 0.961 41 H 0.054 0.946 42 H 0.252 0.748 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.096 0.904 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.824 -9.562 -16.266 20.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.121 4.121 3 C -0.158 4.158 4 C 0.341 3.659 5 O -0.405 6.405 6 N -0.326 5.326 7 C -0.016 4.016 8 C -0.169 4.169 9 C -0.154 4.154 10 C 0.050 3.950 11 H 0.035 0.965 12 C 0.012 3.988 13 H 0.095 0.905 14 C -0.172 4.172 15 C 0.048 3.952 16 N -0.317 5.317 17 C -0.353 4.353 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.567 5.567 21 Si 0.740 3.260 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.182 4.182 26 C -0.200 4.200 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.104 0.896 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.115 0.885 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.302 -8.954 -16.084 19.804 hybrid contribution 0.017 -0.200 1.101 1.119 sum 7.319 -9.154 -14.983 19.023 Atomic orbital electron populations 1.21716 0.94867 1.01433 1.02762 1.21173 0.96734 0.91674 1.02527 1.21529 1.03378 0.97500 0.93357 1.19363 0.80192 0.83470 0.82884 1.90683 1.33831 1.31340 1.84669 1.47903 1.46292 1.28761 1.09640 1.21759 0.92935 0.87602 0.99281 1.21893 1.01777 0.98068 0.95177 1.21428 0.99694 0.98053 0.96198 1.20753 0.93493 0.91192 0.89531 0.96528 1.22426 0.98939 0.94024 0.83444 0.90495 1.23186 0.97972 0.96764 0.99324 1.21882 0.98450 0.88904 0.85926 1.44079 1.72151 1.13155 1.02353 1.19036 1.35757 0.99553 0.80987 0.90311 1.24802 1.01252 0.96291 0.98042 1.69961 1.47536 1.06312 1.32878 0.86081 0.77304 0.77350 0.85246 1.20547 1.21803 1.21794 1.22963 0.99723 1.01279 0.94237 1.23099 0.90262 1.03639 1.03015 0.92367 0.92399 0.92562 0.91183 0.90740 0.89563 0.92052 0.90840 0.92070 0.91804 0.91477 0.92239 0.89559 0.94231 0.92755 0.93796 0.88182 0.88001 0.88538 0.88064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.73 37.16 0.36 -1.30 16 2 C -0.08 -0.82 5.42 -26.73 -0.14 -0.97 16 3 C -0.15 -1.80 0.79 -155.66 -0.12 -1.92 16 4 C 0.55 8.90 6.44 -10.98 -0.07 8.83 16 5 O -0.53 -10.47 13.52 5.56 0.08 -10.40 16 6 N -0.59 -9.41 2.92 -164.05 -0.48 -9.89 16 7 C 0.11 1.29 5.91 -3.50 -0.02 1.27 16 8 C -0.13 -1.66 5.92 -26.47 -0.16 -1.81 16 9 C -0.12 -1.98 5.44 -27.24 -0.15 -2.13 16 10 C 0.16 3.37 2.60 -68.36 -0.18 3.19 16 11 H 0.02 0.39 8.05 -51.93 -0.42 -0.02 16 12 C 0.12 2.25 3.28 -66.80 -0.22 2.03 16 13 H 0.08 1.52 8.13 -51.93 -0.42 1.09 16 14 C -0.13 -2.92 5.20 -24.67 -0.13 -3.05 16 15 C 0.17 4.45 5.49 -1.17 -0.01 4.45 16 16 N -0.59 -15.37 3.35 -162.68 -0.54 -15.92 16 17 C -0.23 -6.26 9.93 -15.06 -0.15 -6.41 16 18 H 0.08 2.10 7.27 -52.49 -0.38 1.72 16 19 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 20 N -0.92 -27.51 10.46 55.49 0.58 -26.93 16 21 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 25 C -0.14 -1.50 9.79 -26.69 -0.26 -1.76 16 26 C -0.16 -1.50 9.80 -26.69 -0.26 -1.77 16 27 H 0.06 0.80 7.85 -51.93 -0.41 0.39 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 31 H 0.07 0.71 5.89 -51.93 -0.31 0.41 16 32 H 0.09 0.84 4.41 -51.93 -0.23 0.62 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 1.11 8.11 -51.93 -0.42 0.69 16 37 H 0.07 1.21 7.67 -51.93 -0.40 0.81 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.09 1.98 6.02 -51.93 -0.31 1.67 16 40 H 0.04 1.12 7.81 -51.93 -0.41 0.71 16 41 H 0.05 1.52 7.19 -51.93 -0.37 1.14 16 42 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.10 1.21 8.06 -51.93 -0.42 0.79 16 45 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 348.51 15.07 5.25 5.25 Total: -1.00 -32.05 348.51 -9.60 -41.65 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -7.85 Total: 0.66 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -1.60 Total: -1.65 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.44 Total: -52.73 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.08 Total: -10.40 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.05 -9.60 -41.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049702524.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.902 kcal (2) G-P(sol) polarization free energy of solvation -32.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds