Wall clock time and date at job start Tue Mar 31 2020 06:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47351 * 2 1 4 4 C 1.50704 * 115.54991 * 294.58481 * 3 2 1 5 5 O 1.21276 * 120.00116 * 100.66456 * 4 3 2 6 6 N 1.34780 * 119.99556 * 280.66230 * 4 3 2 7 7 C 1.46796 * 119.57920 * 355.14625 * 6 4 3 8 8 C 1.53466 * 107.59260 * 127.91868 * 7 6 4 9 9 C 1.54345 * 108.14839 * 58.49133 * 8 7 6 10 10 C 1.53012 * 109.93858 * 295.47724 * 9 8 7 11 11 H 1.09002 * 112.10160 * 291.62468 * 10 9 8 12 12 C 1.45120 * 119.57272 * 175.11858 * 6 4 3 13 13 H 1.08999 * 109.97455 * 348.09552 * 12 6 4 14 14 C 1.54423 * 112.30077 * 110.93999 * 12 6 4 15 15 C 1.54567 * 102.44859 * 156.91731 * 14 12 6 16 16 N 1.47124 * 107.25268 * 338.32726 * 15 14 12 17 17 C 1.36937 * 125.76479 * 177.66876 * 16 15 14 18 18 H 1.08006 * 119.99552 * 179.69831 * 17 16 15 19 19 C 1.38805 * 120.00289 * 359.69409 * 17 16 15 20 20 N 1.31622 * 119.99824 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00180 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47317 * 59.99801 * 21 19 17 23 23 H 1.48499 * 109.47110 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46702 * 299.99817 * 21 19 17 25 25 C 1.52999 * 117.51773 * 80.27999 * 3 2 1 26 26 C 1.52997 * 59.99998 * 107.48481 * 25 3 2 27 27 H 1.08998 * 109.47095 * 295.74606 * 1 2 3 28 28 H 1.08996 * 109.47261 * 55.75149 * 1 2 3 29 29 H 1.09005 * 109.46966 * 175.74647 * 1 2 3 30 30 H 1.08997 * 109.47150 * 239.99965 * 2 1 3 31 31 H 1.09002 * 109.47093 * 119.99706 * 2 1 3 32 32 H 1.08995 * 109.83507 * 247.44346 * 7 6 4 33 33 H 1.09001 * 109.83479 * 8.40181 * 7 6 4 34 34 H 1.09004 * 109.64043 * 177.76352 * 8 7 6 35 35 H 1.08996 * 109.64913 * 298.18387 * 8 7 6 36 36 H 1.09006 * 108.90604 * 175.85828 * 9 8 7 37 37 H 1.09004 * 110.38327 * 56.02432 * 9 8 7 38 38 H 1.08999 * 110.81759 * 275.15985 * 14 12 6 39 39 H 1.09005 * 110.81059 * 38.48281 * 14 12 6 40 40 H 1.09001 * 109.88785 * 218.92054 * 15 14 12 41 41 H 1.08993 * 109.88751 * 97.73873 * 15 14 12 42 42 H 0.97005 * 119.99600 * 180.02562 * 20 19 17 43 43 H 1.09004 * 117.50244 * 214.97664 * 25 3 2 44 44 H 1.09005 * 117.49897 * 359.97438 * 25 3 2 45 45 H 1.08997 * 117.49808 * 252.50981 * 26 25 3 46 46 H 1.09002 * 117.50150 * 107.49194 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.7234 2.2438 -1.2364 5 8 0.8025 3.0329 -1.2283 6 7 2.4638 2.0836 -2.3512 7 6 3.6409 1.2070 -2.3195 8 6 3.5127 0.2160 -3.4843 9 6 3.4203 1.0248 -4.7956 10 6 2.1381 1.8598 -4.8044 11 1 1.2450 1.2392 -4.8771 12 6 2.0867 2.7794 -3.5675 13 1 1.0885 3.2037 -3.4597 14 6 3.0936 3.8878 -3.9447 15 6 2.8595 4.0477 -5.4641 16 7 2.2394 2.8026 -5.9435 17 6 1.8304 2.5546 -7.2266 18 1 1.3889 1.6014 -7.4779 19 6 1.9830 3.5281 -8.2042 20 7 2.5204 4.6899 -7.8977 21 14 1.4243 3.1900 -9.9543 22 1 -0.0319 2.8994 -9.9617 23 1 1.6952 4.3808 -10.7991 24 1 2.1651 2.0212 -10.4932 25 6 2.0597 2.1853 1.3374 26 6 3.3712 1.7211 0.7008 27 1 -0.3633 0.4464 0.9256 28 1 -0.3633 0.5783 -0.8494 29 1 -0.3633 -1.0249 -0.0762 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.5474 1.8006 -2.4370 33 1 3.6728 0.6647 -1.3745 34 1 4.3918 -0.4277 -3.5161 35 1 2.6180 -0.3921 -3.3513 36 1 3.4031 0.3323 -5.6373 37 1 4.2804 1.6871 -4.8946 38 1 2.8651 4.8144 -3.4180 39 1 4.1155 3.5692 -3.7387 40 1 3.8112 4.2069 -5.9712 41 1 2.1926 4.8895 -5.6500 42 1 2.6267 5.3703 -8.5809 43 1 1.8436 3.2536 1.3231 44 1 1.7088 1.6465 2.2176 45 1 3.8835 0.8769 1.1622 46 1 4.0181 2.4840 0.2676 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049702526.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:47 Heat of formation + Delta-G solvation = 13.543531 kcal Electronic energy + Delta-G solvation = -25245.306297 eV Core-core repulsion = 21943.144812 eV Total energy + Delta-G solvation = -3302.161485 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.66532 -38.54818 -36.71501 -35.17009 -32.27244 -32.14740 -32.03008 -29.02810 -28.25006 -25.50381 -24.26730 -24.14178 -22.64329 -22.33120 -21.82922 -20.04748 -19.21473 -17.96102 -16.85779 -16.68049 -15.98513 -15.56305 -14.73606 -14.59283 -14.35635 -14.15404 -13.85914 -13.69569 -13.40976 -13.26285 -12.77666 -12.51983 -12.36664 -12.01445 -11.90650 -11.75311 -11.65494 -11.36777 -11.26044 -11.01418 -10.97806 -10.77367 -10.64067 -10.51750 -10.41559 -10.19722 -10.09461 -9.98590 -9.61834 -9.59152 -9.33918 -8.60548 -8.22634 -6.84567 -5.69584 -3.03777 2.76663 3.13387 3.41700 3.46033 3.47184 3.55213 4.38374 4.49423 4.53107 4.65903 4.79502 5.02770 5.20966 5.21679 5.28091 5.31836 5.40588 5.42065 5.45108 5.52806 5.60345 5.64856 5.69677 5.71609 5.80781 5.86447 5.89151 5.95021 5.97414 6.02722 6.11151 6.21666 6.23624 6.32199 6.38309 6.52891 6.62150 6.76532 7.02725 7.08754 7.56036 7.61952 7.68961 7.83716 8.24857 8.42596 9.21897 9.81709 10.47905 11.41579 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.027735 B = 0.004270 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.327828 B = 6555.506432 C = 6659.171274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.078 4.078 3 C -0.151 4.151 4 C 0.547 3.453 5 O -0.539 6.539 6 N -0.587 5.587 7 C 0.106 3.894 8 C -0.134 4.134 9 C -0.127 4.127 10 C 0.156 3.844 11 H 0.058 0.942 12 C 0.130 3.870 13 H 0.098 0.902 14 C -0.151 4.151 15 C 0.181 3.819 16 N -0.598 5.598 17 C -0.227 4.227 18 H 0.077 0.923 19 C -0.006 4.006 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.286 1.286 25 C -0.146 4.146 26 C -0.167 4.167 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.041 0.959 41 H 0.051 0.949 42 H 0.253 0.747 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.103 0.897 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.517 -9.565 17.458 20.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.116 4.116 3 C -0.154 4.154 4 C 0.334 3.666 5 O -0.415 6.415 6 N -0.318 5.318 7 C -0.017 4.017 8 C -0.173 4.173 9 C -0.167 4.167 10 C 0.047 3.953 11 H 0.077 0.923 12 C 0.026 3.974 13 H 0.116 0.884 14 C -0.190 4.190 15 C 0.056 3.944 16 N -0.323 5.323 17 C -0.355 4.355 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.569 5.569 21 Si 0.742 3.258 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C -0.183 4.183 26 C -0.204 4.204 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.011 -8.980 17.188 19.625 hybrid contribution -0.111 -0.115 -1.071 1.083 sum 2.901 -9.095 16.117 18.732 Atomic orbital electron populations 1.21717 0.94913 1.01468 1.02687 1.21026 0.96641 0.91352 1.02545 1.21453 1.03254 0.97584 0.93116 1.19535 0.81830 0.81941 0.83339 1.90684 1.30692 1.36698 1.83462 1.47544 1.27638 1.46227 1.10352 1.21898 0.88009 0.92125 0.99676 1.22223 1.01678 0.97561 0.95872 1.22388 1.00460 0.98649 0.95252 1.21370 0.95441 0.91323 0.87167 0.92350 1.21746 0.99808 0.93093 0.82770 0.88379 1.23101 0.98112 0.97573 1.00235 1.21165 0.97820 0.89446 0.85949 1.44707 1.71439 1.11769 1.04392 1.18984 1.33867 0.99336 0.83345 0.90524 1.24785 1.01173 0.96151 0.98162 1.69952 1.49256 1.05270 1.32403 0.86208 0.78406 0.76882 0.84304 1.21181 1.21623 1.21222 1.22978 0.99845 1.01133 0.94348 1.23171 0.90350 1.03777 1.03112 0.92532 0.92218 0.92596 0.91002 0.91084 0.91537 0.89548 0.91476 0.91782 0.92256 0.91649 0.92158 0.92370 0.94100 0.93050 0.93705 0.88213 0.88093 0.87900 0.88338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.84 37.16 0.37 -1.23 16 2 C -0.08 -0.75 5.55 -26.73 -0.15 -0.90 16 3 C -0.15 -1.71 0.73 -155.66 -0.11 -1.82 16 4 C 0.55 8.64 6.15 -10.98 -0.07 8.57 16 5 O -0.54 -10.71 16.34 5.56 0.09 -10.62 16 6 N -0.59 -9.13 2.75 -165.02 -0.45 -9.58 16 7 C 0.11 1.29 5.63 -3.64 -0.02 1.27 16 8 C -0.13 -1.73 6.16 -25.78 -0.16 -1.89 16 9 C -0.13 -2.22 5.21 -26.02 -0.14 -2.35 16 10 C 0.16 3.18 3.56 -66.35 -0.24 2.95 16 11 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 12 C 0.13 2.49 3.03 -67.29 -0.20 2.29 16 13 H 0.10 2.16 7.00 -51.93 -0.36 1.79 16 14 C -0.15 -2.97 6.11 -25.16 -0.15 -3.12 16 15 C 0.18 4.43 5.19 -2.88 -0.01 4.42 16 16 N -0.60 -15.06 2.91 -162.19 -0.47 -15.53 16 17 C -0.23 -6.27 10.29 -15.06 -0.16 -6.43 16 18 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 19 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 20 N -0.92 -27.09 10.33 55.49 0.57 -26.52 16 21 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 C -0.15 -1.46 9.87 -26.73 -0.26 -1.72 16 26 C -0.17 -1.48 8.19 -26.73 -0.22 -1.70 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.80 7.59 -51.93 -0.39 0.40 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.69 7.53 -51.93 -0.39 0.30 16 31 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 32 H 0.07 0.80 7.61 -51.93 -0.40 0.41 16 33 H 0.09 0.85 4.54 -51.93 -0.24 0.61 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 1.22 7.13 -51.93 -0.37 0.85 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.06 1.05 6.93 -51.93 -0.36 0.69 16 40 H 0.04 1.09 7.60 -51.93 -0.39 0.70 16 41 H 0.05 1.41 7.29 -51.93 -0.38 1.03 16 42 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 351.21 15.07 5.29 5.29 Total: -1.00 -31.41 351.21 -9.51 -40.93 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -7.90 Total: 0.83 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -1.62 Total: -1.93 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: -0.35 Total: -51.63 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.09 Total: -10.62 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.41 -9.51 -40.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049702526.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.470 kcal (2) G-P(sol) polarization free energy of solvation -31.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds