Wall clock time and date at job start Tue Mar 31 2020 07:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50693 * 120.00151 * 2 1 4 4 C 1.53001 * 109.47340 * 359.97438 * 3 2 1 5 5 C 1.53000 * 109.47397 * 240.00028 * 3 2 1 6 6 C 1.50695 * 109.47415 * 120.00117 * 3 2 1 7 7 O 1.21276 * 120.00597 * 124.42317 * 6 3 2 8 8 N 1.34775 * 119.99989 * 304.42525 * 6 3 2 9 9 C 1.47668 * 134.46413 * 175.19680 * 8 6 3 10 10 C 1.53501 * 85.98268 * 204.29628 * 9 8 6 11 11 C 1.47673 * 134.45393 * 355.16587 * 8 6 3 12 12 C 1.52670 * 113.56944 * 222.23642 * 10 9 8 13 13 C 1.53338 * 109.11710 * 286.15754 * 12 10 9 14 14 N 1.46872 * 108.76204 * 307.59000 * 13 12 10 15 15 C 1.36940 * 120.47337 * 235.52599 * 14 13 12 16 16 H 1.08002 * 120.00296 * 32.29276 * 15 14 13 17 17 C 1.38815 * 120.00016 * 212.29473 * 15 14 13 18 18 N 1.31615 * 120.00371 * 10.58387 * 17 15 14 19 19 Si 1.86801 * 119.99915 * 190.58313 * 17 15 14 20 20 H 1.48503 * 109.47090 * 90.00015 * 19 17 15 21 21 H 1.48494 * 109.47136 * 209.99885 * 19 17 15 22 22 H 1.48501 * 109.47031 * 329.99975 * 19 17 15 23 23 C 1.46891 * 119.05678 * 55.54431 * 14 13 12 24 24 C 1.52664 * 113.57404 * 91.01213 * 10 9 8 25 25 H 1.08004 * 120.00060 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.00177 * 180.02562 * 1 2 3 27 27 H 1.08004 * 119.99494 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47285 * 184.24131 * 4 3 2 29 29 H 1.09003 * 109.46841 * 304.24367 * 4 3 2 30 30 H 1.08997 * 109.47283 * 64.24378 * 4 3 2 31 31 H 1.08999 * 109.47139 * 300.00307 * 5 3 2 32 32 H 1.09003 * 109.47094 * 59.99783 * 5 3 2 33 33 H 1.08996 * 109.47502 * 179.97438 * 5 3 2 34 34 H 1.09002 * 113.79162 * 90.02762 * 9 8 6 35 35 H 1.09005 * 113.78698 * 318.56313 * 9 8 6 36 36 H 1.08993 * 113.78988 * 41.43511 * 11 8 6 37 37 H 1.09000 * 113.79218 * 269.96767 * 11 8 6 38 38 H 1.09003 * 109.53238 * 46.04754 * 12 10 9 39 39 H 1.08999 * 109.53230 * 166.26735 * 12 10 9 40 40 H 1.09003 * 109.59056 * 187.80514 * 13 12 10 41 41 H 1.08999 * 109.59057 * 67.37727 * 13 12 10 42 42 H 0.96997 * 120.00845 * 180.02562 * 18 17 15 43 43 H 1.09007 * 109.59043 * 184.67326 * 23 14 13 44 44 H 1.08995 * 109.58902 * 64.23656 * 23 14 13 45 45 H 1.09000 * 109.52757 * 193.72848 * 24 10 9 46 46 H 1.09004 * 109.52914 * 313.94083 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9431 1.3861 -1.2492 6 6 2.9299 1.3849 1.2304 7 8 4.1225 1.5761 1.1210 8 7 2.3795 1.2438 2.4525 9 6 2.9155 1.1761 3.8268 10 6 1.6300 0.4129 4.1750 11 6 0.9984 1.0954 2.9539 12 6 1.0083 0.8382 5.5030 13 6 1.8531 0.2801 6.6546 14 7 2.0277 -1.1645 6.4554 15 6 1.6622 -2.0497 7.4342 16 1 0.8264 -1.8255 8.0804 17 6 2.3661 -3.2352 7.5959 18 7 3.5024 -3.4183 6.9575 19 14 1.7004 -4.5708 8.7196 20 1 0.8281 -5.4849 7.9393 21 1 2.8312 -5.3398 9.2983 22 1 0.9127 -3.9493 9.8144 23 6 2.6004 -1.6463 5.1914 24 6 1.7605 -1.1012 4.0301 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8499 -0.9354 -0.0004 28 1 1.6122 3.4101 -0.0766 29 1 0.3940 2.3682 -0.8504 30 1 0.4934 2.4543 0.9247 31 1 3.6514 0.5576 -1.2493 32 1 2.3164 1.3284 -2.1392 33 1 3.4878 2.3302 -1.2495 34 1 2.9965 2.1471 4.3155 35 1 3.8211 0.5761 3.9165 36 1 0.3803 0.4313 2.3498 37 1 0.5097 2.0423 3.1832 38 1 0.9847 1.9264 5.5625 39 1 -0.0065 0.4464 5.5724 40 1 1.3440 0.4596 7.6016 41 1 2.8275 0.7684 6.6629 42 1 3.9940 -4.2468 7.0702 43 1 2.5836 -2.7361 5.1745 44 1 3.6271 -1.2929 5.0972 45 1 0.7702 -1.5560 4.0516 46 1 2.2500 -1.3359 3.0848 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050616656.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:04 Heat of formation + Delta-G solvation = 35.771974 kcal Electronic energy + Delta-G solvation = -24911.596957 eV Core-core repulsion = 21610.399369 eV Total energy + Delta-G solvation = -3301.197588 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 6.09 seconds Orbital eigenvalues (eV) -40.83491 -38.84253 -36.33377 -35.81104 -32.46534 -30.91467 -30.31170 -29.95700 -27.61340 -27.12121 -26.19049 -24.33731 -23.21986 -22.33464 -20.91968 -20.14274 -18.15830 -18.03285 -17.00197 -16.36508 -15.93065 -15.66651 -15.04944 -14.85216 -14.46834 -13.90662 -13.68959 -13.53579 -13.24046 -13.10232 -12.87787 -12.71565 -12.38838 -12.19566 -12.08975 -11.98805 -11.80689 -11.59086 -11.40507 -11.29098 -10.96721 -10.87529 -10.77126 -10.47309 -10.29635 -10.16380 -9.96376 -9.78452 -9.63015 -9.54950 -9.04299 -8.48350 -8.44946 -6.59888 -5.78087 -3.27611 2.06524 2.77202 3.00494 3.36701 3.43537 3.44772 4.40632 4.48312 4.56495 4.65424 4.70619 4.90138 5.15824 5.20156 5.25706 5.35820 5.41129 5.48951 5.53225 5.55540 5.60150 5.64702 5.65503 5.67998 5.74107 5.93943 5.99511 6.02094 6.09424 6.11309 6.13696 6.29470 6.43019 6.46273 6.56176 6.61864 6.62986 6.69366 6.83917 6.96523 7.36804 7.70010 7.78967 7.91536 8.30833 8.49038 9.22897 9.84333 10.42386 11.29378 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.026115 B = 0.003996 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.937377 B = 7005.414814 C = 7119.126188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.139 4.139 3 C -0.051 4.051 4 C -0.143 4.143 5 C -0.122 4.122 6 C 0.545 3.455 7 O -0.546 6.546 8 N -0.632 5.632 9 C 0.115 3.885 10 C -0.073 4.073 11 C 0.098 3.902 12 C -0.120 4.120 13 C 0.146 3.854 14 N -0.590 5.590 15 C -0.254 4.254 16 H 0.064 0.936 17 C 0.006 3.994 18 N -0.904 5.904 19 Si 0.903 3.097 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.173 3.827 24 C -0.114 4.114 25 H 0.104 0.896 26 H 0.102 0.898 27 H 0.113 0.887 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.018 0.982 42 H 0.254 0.746 43 H 0.090 0.910 44 H 0.017 0.983 45 H 0.059 0.941 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.663 10.113 -13.265 18.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.158 4.158 3 C -0.054 4.054 4 C -0.200 4.200 5 C -0.179 4.179 6 C 0.334 3.666 7 O -0.424 6.424 8 N -0.366 5.366 9 C -0.007 4.007 10 C -0.074 4.074 11 C -0.025 4.025 12 C -0.159 4.159 13 C 0.020 3.980 14 N -0.313 5.313 15 C -0.384 4.384 16 H 0.081 0.919 17 C -0.193 4.193 18 N -0.548 5.548 19 Si 0.733 3.267 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.204 1.204 23 C 0.047 3.953 24 C -0.153 4.153 25 H 0.122 0.878 26 H 0.120 0.880 27 H 0.131 0.869 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.036 0.964 42 H 0.064 0.936 43 H 0.108 0.892 44 H 0.035 0.965 45 H 0.078 0.922 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.800 10.091 -13.492 18.169 hybrid contribution -0.289 -0.725 0.550 0.955 sum -7.089 9.366 -12.942 17.478 Atomic orbital electron populations 1.24009 0.95767 1.02419 1.00382 1.22709 0.95931 0.96888 1.00229 1.19856 0.96020 0.95247 0.94245 1.21950 0.98494 0.96797 1.02763 1.21601 0.98675 1.03271 0.94399 1.20034 0.87852 0.75671 0.83037 1.90682 1.15904 1.49784 1.86033 1.49973 1.10134 1.71463 1.04990 1.23286 0.99114 0.99513 0.78742 1.21991 0.94380 0.97051 0.93931 1.23563 0.85093 0.99705 0.94144 1.21960 1.00360 0.98632 0.94994 1.20892 0.95892 0.86288 0.94959 1.43968 1.73744 0.99547 1.14034 1.19182 1.09090 0.99241 1.10893 0.91868 1.25180 0.95143 1.00109 0.98894 1.69964 1.13961 1.25727 1.45134 0.86280 0.77863 0.81990 0.80536 1.21444 1.21715 1.20414 1.20786 0.92212 1.00320 0.81996 1.21940 1.01710 0.91430 1.00248 0.87785 0.87986 0.86889 0.92006 0.91150 0.91731 0.91836 0.92054 0.91731 0.90307 0.89876 0.89766 0.90314 0.92830 0.91730 0.92688 0.96399 0.93579 0.89177 0.96463 0.92198 0.93248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.71 12.05 29.02 0.35 -1.36 16 2 C -0.14 -1.51 7.62 -36.03 -0.27 -1.79 16 3 C -0.05 -0.59 0.76 -156.82 -0.12 -0.71 16 4 C -0.14 -1.33 7.08 37.16 0.26 -1.07 16 5 C -0.12 -1.35 7.75 37.16 0.29 -1.06 16 6 C 0.55 8.53 6.70 -10.99 -0.07 8.45 16 7 O -0.55 -10.61 16.71 5.56 0.09 -10.52 16 8 N -0.63 -9.36 3.35 -180.21 -0.60 -9.97 16 9 C 0.12 1.84 7.62 -3.15 -0.02 1.82 16 10 C -0.07 -1.12 0.77 -154.43 -0.12 -1.24 16 11 C 0.10 1.23 5.76 -3.15 -0.02 1.21 16 12 C -0.12 -1.86 5.26 -26.73 -0.14 -2.00 16 13 C 0.15 2.89 6.39 -3.66 -0.02 2.87 16 14 N -0.59 -14.24 2.95 -172.21 -0.51 -14.75 16 15 C -0.25 -6.80 9.55 -15.06 -0.14 -6.94 16 16 H 0.06 1.66 7.85 -52.49 -0.41 1.25 16 17 C 0.01 0.15 5.04 -17.43 -0.09 0.06 16 18 N -0.90 -25.97 11.06 55.49 0.61 -25.36 16 19 Si 0.90 21.38 29.57 -169.99 -5.03 16.36 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 C 0.17 4.01 5.16 -3.66 -0.02 3.99 16 24 C -0.11 -2.09 5.21 -26.73 -0.14 -2.23 16 25 H 0.10 0.81 5.68 -52.48 -0.30 0.51 16 26 H 0.10 0.85 8.06 -52.49 -0.42 0.43 16 27 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.53 7.23 -51.93 -0.38 0.15 16 30 H 0.06 0.59 5.95 -51.93 -0.31 0.28 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.74 8.05 -51.93 -0.42 0.32 16 34 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 35 H 0.08 1.52 7.41 -51.93 -0.38 1.14 16 36 H 0.08 0.99 5.59 -51.93 -0.29 0.70 16 37 H 0.08 0.84 8.01 -51.93 -0.42 0.43 16 38 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.05 1.07 7.92 -51.93 -0.41 0.66 16 41 H 0.02 0.36 8.08 -51.93 -0.42 -0.06 16 42 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.09 2.38 6.05 -51.92 -0.31 2.07 16 44 H 0.02 0.43 7.50 -51.93 -0.39 0.04 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.05 0.89 8.01 -51.93 -0.42 0.47 16 LS Contribution 352.35 15.07 5.31 5.31 Total: -1.00 -30.79 352.35 -8.19 -38.98 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -7.79 Total: -0.07 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -0.28 Total: 0.01 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: -0.50 Total: -50.07 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.79 -8.19 -38.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050616656.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.755 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.10 seconds