Wall clock time and date at job start Tue Mar 31 2020 07:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50693 * 120.00151 * 2 1 4 4 C 1.53001 * 109.47340 * 359.97438 * 3 2 1 5 5 C 1.53000 * 109.47397 * 240.00028 * 3 2 1 6 6 C 1.50695 * 109.47415 * 120.00117 * 3 2 1 7 7 O 1.21276 * 120.00597 * 124.42317 * 6 3 2 8 8 N 1.34775 * 119.99989 * 304.42525 * 6 3 2 9 9 C 1.47668 * 134.46413 * 175.19680 * 8 6 3 10 10 C 1.53501 * 85.98268 * 204.29628 * 9 8 6 11 11 C 1.47673 * 134.45393 * 355.16587 * 8 6 3 12 12 C 1.52670 * 113.56944 * 222.23642 * 10 9 8 13 13 C 1.53338 * 109.11710 * 286.15754 * 12 10 9 14 14 N 1.46872 * 108.76204 * 307.59000 * 13 12 10 15 15 C 1.36940 * 120.47337 * 235.52599 * 14 13 12 16 16 H 1.08002 * 120.00296 * 32.29276 * 15 14 13 17 17 C 1.38815 * 120.00016 * 212.29473 * 15 14 13 18 18 N 1.31615 * 120.00371 * 10.58387 * 17 15 14 19 19 Si 1.86801 * 119.99915 * 190.58313 * 17 15 14 20 20 H 1.48503 * 109.47090 * 90.00015 * 19 17 15 21 21 H 1.48494 * 109.47136 * 209.99885 * 19 17 15 22 22 H 1.48501 * 109.47031 * 329.99975 * 19 17 15 23 23 C 1.46891 * 119.05678 * 55.54431 * 14 13 12 24 24 C 1.52664 * 113.57404 * 91.01213 * 10 9 8 25 25 H 1.08004 * 120.00060 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.00177 * 180.02562 * 1 2 3 27 27 H 1.08004 * 119.99494 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47285 * 184.24131 * 4 3 2 29 29 H 1.09003 * 109.46841 * 304.24367 * 4 3 2 30 30 H 1.08997 * 109.47283 * 64.24378 * 4 3 2 31 31 H 1.08999 * 109.47139 * 300.00307 * 5 3 2 32 32 H 1.09003 * 109.47094 * 59.99783 * 5 3 2 33 33 H 1.08996 * 109.47502 * 179.97438 * 5 3 2 34 34 H 1.09002 * 113.79162 * 90.02762 * 9 8 6 35 35 H 1.09005 * 113.78698 * 318.56313 * 9 8 6 36 36 H 1.08993 * 113.78988 * 41.43511 * 11 8 6 37 37 H 1.09000 * 113.79218 * 269.96767 * 11 8 6 38 38 H 1.09003 * 109.53238 * 46.04754 * 12 10 9 39 39 H 1.08999 * 109.53230 * 166.26735 * 12 10 9 40 40 H 1.09003 * 109.59056 * 187.80514 * 13 12 10 41 41 H 1.08999 * 109.59057 * 67.37727 * 13 12 10 42 42 H 0.96997 * 120.00845 * 180.02562 * 18 17 15 43 43 H 1.09007 * 109.59043 * 184.67326 * 23 14 13 44 44 H 1.08995 * 109.58902 * 64.23656 * 23 14 13 45 45 H 1.09000 * 109.52757 * 193.72848 * 24 10 9 46 46 H 1.09004 * 109.52914 * 313.94083 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9431 1.3861 -1.2492 6 6 2.9299 1.3849 1.2304 7 8 4.1225 1.5761 1.1210 8 7 2.3795 1.2438 2.4525 9 6 2.9155 1.1761 3.8268 10 6 1.6300 0.4129 4.1750 11 6 0.9984 1.0954 2.9539 12 6 1.0083 0.8382 5.5030 13 6 1.8531 0.2801 6.6546 14 7 2.0277 -1.1645 6.4554 15 6 1.6622 -2.0497 7.4342 16 1 0.8264 -1.8255 8.0804 17 6 2.3661 -3.2352 7.5959 18 7 3.5024 -3.4183 6.9575 19 14 1.7004 -4.5708 8.7196 20 1 0.8281 -5.4849 7.9393 21 1 2.8312 -5.3398 9.2983 22 1 0.9127 -3.9493 9.8144 23 6 2.6004 -1.6463 5.1914 24 6 1.7605 -1.1012 4.0301 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8499 -0.9354 -0.0004 28 1 1.6122 3.4101 -0.0766 29 1 0.3940 2.3682 -0.8504 30 1 0.4934 2.4543 0.9247 31 1 3.6514 0.5576 -1.2493 32 1 2.3164 1.3284 -2.1392 33 1 3.4878 2.3302 -1.2495 34 1 2.9965 2.1471 4.3155 35 1 3.8211 0.5761 3.9165 36 1 0.3803 0.4313 2.3498 37 1 0.5097 2.0423 3.1832 38 1 0.9847 1.9264 5.5625 39 1 -0.0065 0.4464 5.5724 40 1 1.3440 0.4596 7.6016 41 1 2.8275 0.7684 6.6629 42 1 3.9940 -4.2468 7.0702 43 1 2.5836 -2.7361 5.1745 44 1 3.6271 -1.2929 5.0972 45 1 0.7702 -1.5560 4.0516 46 1 2.2500 -1.3359 3.0848 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050616656.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:52 Heat of formation + Delta-G solvation = 17.680694 kcal Electronic energy + Delta-G solvation = -24912.381453 eV Core-core repulsion = 21610.399369 eV Total energy + Delta-G solvation = -3301.982085 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 5.75 seconds Orbital eigenvalues (eV) -42.03908 -40.06852 -37.49077 -37.33922 -34.24680 -31.99570 -31.66536 -31.60173 -28.75490 -28.24976 -27.36043 -26.03435 -24.29217 -23.91960 -22.47332 -21.23353 -19.61034 -19.16873 -18.27260 -17.84875 -17.14929 -16.90908 -16.71890 -16.00189 -15.62707 -15.41201 -15.25689 -14.94320 -14.61890 -14.46636 -14.03155 -13.93221 -13.48648 -13.36826 -13.20820 -13.11520 -13.02749 -12.83645 -12.75737 -12.70448 -12.59781 -12.23735 -12.14823 -11.97244 -11.81683 -11.66843 -11.33820 -11.28148 -11.21311 -10.86105 -10.52852 -10.05568 -9.67013 -8.57867 -7.83999 -5.36725 1.27369 1.48137 1.48364 1.57728 1.63358 1.87977 2.52283 3.27857 3.38232 3.48528 3.72823 3.75245 3.85478 3.93385 4.01326 4.16101 4.23413 4.41602 4.45245 4.54420 4.58579 4.63557 4.69597 4.75619 4.78351 4.80564 4.85796 4.86365 4.91459 4.97379 5.06621 5.07288 5.15164 5.23135 5.27116 5.30018 5.34187 5.42997 5.56450 5.67233 5.70065 5.78077 5.80086 6.44449 6.76350 7.11715 7.18629 7.89583 8.41940 9.20963 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.026115 B = 0.003996 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.937377 B = 7005.414814 C = 7119.126188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.166 4.166 3 C -0.044 4.044 4 C -0.139 4.139 5 C -0.121 4.121 6 C 0.534 3.466 7 O -0.598 6.598 8 N -0.632 5.632 9 C 0.108 3.892 10 C -0.074 4.074 11 C 0.117 3.883 12 C -0.104 4.104 13 C 0.139 3.861 14 N -0.608 5.608 15 C -0.259 4.259 16 H 0.070 0.930 17 C -0.051 4.051 18 N -0.940 5.940 19 Si 0.967 3.033 20 H -0.284 1.284 21 H -0.299 1.299 22 H -0.265 1.265 23 C 0.182 3.818 24 C -0.097 4.097 25 H 0.127 0.873 26 H 0.111 0.889 27 H 0.094 0.906 28 H 0.058 0.942 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.041 0.959 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.098 0.902 35 H 0.044 0.956 36 H 0.099 0.901 37 H 0.117 0.883 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.009 0.991 42 H 0.248 0.752 43 H 0.051 0.949 44 H -0.016 1.016 45 H 0.065 0.935 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.455 11.939 -14.028 21.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.184 4.184 3 C -0.047 4.047 4 C -0.196 4.196 5 C -0.179 4.179 6 C 0.326 3.674 7 O -0.479 6.479 8 N -0.365 5.365 9 C -0.014 4.014 10 C -0.075 4.075 11 C -0.004 4.004 12 C -0.143 4.143 13 C 0.014 3.986 14 N -0.331 5.331 15 C -0.390 4.390 16 H 0.087 0.913 17 C -0.246 4.246 18 N -0.586 5.586 19 Si 0.796 3.204 20 H -0.211 1.211 21 H -0.226 1.226 22 H -0.190 1.190 23 C 0.056 3.944 24 C -0.136 4.136 25 H 0.144 0.856 26 H 0.129 0.871 27 H 0.112 0.888 28 H 0.077 0.923 29 H 0.114 0.886 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.063 0.937 36 H 0.117 0.883 37 H 0.135 0.865 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.027 0.973 42 H 0.057 0.943 43 H 0.069 0.931 44 H 0.002 0.998 45 H 0.083 0.917 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.647 11.945 -14.250 21.427 hybrid contribution 0.931 -1.288 0.819 1.788 sum -9.716 10.657 -13.431 19.707 Atomic orbital electron populations 1.24253 0.94808 1.03918 0.96817 1.22553 0.96647 0.95743 1.03475 1.19853 0.95989 0.96976 0.91857 1.21977 0.98085 0.95222 1.04348 1.21609 0.98745 1.01861 0.95636 1.20929 0.87776 0.74489 0.84243 1.90650 1.18314 1.52141 1.86826 1.50063 1.11221 1.70833 1.04396 1.23283 0.97881 0.99975 0.80276 1.21870 0.94926 0.94791 0.95868 1.23643 0.83935 1.01217 0.91617 1.21816 0.99367 1.00767 0.92391 1.21095 0.96435 0.83813 0.97297 1.44223 1.73725 1.01326 1.13854 1.19563 1.08813 0.99728 1.10875 0.91262 1.25945 0.95487 1.02456 1.00716 1.70157 1.15504 1.25918 1.47062 0.85264 0.76939 0.79230 0.78997 1.21116 1.22592 1.18975 1.20482 0.91701 0.98059 0.84130 1.21640 1.00512 0.93920 0.97535 0.85550 0.87064 0.88768 0.92286 0.88579 0.90814 0.93966 0.89311 0.92667 0.88355 0.93718 0.88328 0.86493 0.88874 0.90887 0.92435 0.97272 0.94332 0.93082 0.99768 0.91674 0.93554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 12.05 67.78 0.82 -1.41 16 2 C -0.17 -3.24 7.62 25.65 0.20 -3.04 16 3 C -0.04 -0.94 0.76 -53.68 -0.04 -0.98 16 4 C -0.14 -2.03 7.08 71.98 0.51 -1.52 16 5 C -0.12 -2.59 7.75 71.98 0.56 -2.03 16 6 C 0.53 16.50 6.70 87.66 0.59 17.09 16 7 O -0.60 -24.09 16.71 -3.02 -0.05 -24.14 16 8 N -0.63 -17.76 3.35 -842.46 -2.82 -20.58 16 9 C 0.11 3.40 7.62 86.32 0.66 4.06 16 10 C -0.07 -2.12 0.77 -52.04 -0.04 -2.16 16 11 C 0.12 2.45 5.76 86.31 0.50 2.94 16 12 C -0.10 -2.89 5.26 30.60 0.16 -2.73 16 13 C 0.14 5.36 6.39 86.42 0.55 5.91 16 14 N -0.61 -29.75 2.95 -698.76 -2.06 -31.81 16 15 C -0.26 -13.99 9.55 84.03 0.80 -13.18 16 16 H 0.07 3.59 7.85 -2.91 -0.02 3.57 16 17 C -0.05 -2.84 5.04 84.86 0.43 -2.42 16 18 N -0.94 -56.52 11.06 21.65 0.24 -56.28 16 19 Si 0.97 44.65 29.57 68.60 2.03 46.67 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 23 C 0.18 8.86 5.16 86.42 0.45 9.31 16 24 C -0.10 -3.54 5.21 30.59 0.16 -3.38 16 25 H 0.13 1.21 5.68 -2.91 -0.02 1.19 16 26 H 0.11 1.38 8.06 -2.91 -0.02 1.35 16 27 H 0.09 2.17 8.06 -2.91 -0.02 2.14 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.10 0.93 7.23 -2.39 -0.02 0.92 16 30 H 0.07 0.94 5.95 -2.39 -0.01 0.93 16 31 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.05 1.26 8.05 -2.39 -0.02 1.24 16 34 H 0.10 2.69 8.07 -2.39 -0.02 2.67 16 35 H 0.04 1.74 7.41 -2.38 -0.02 1.72 16 36 H 0.10 1.84 5.59 -2.39 -0.01 1.82 16 37 H 0.12 1.71 8.01 -2.39 -0.02 1.69 16 38 H 0.09 1.93 8.12 -2.39 -0.02 1.91 16 39 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.06 2.16 7.92 -2.39 -0.02 2.14 16 41 H 0.01 0.37 8.08 -2.39 -0.02 0.35 16 42 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 43 H 0.05 2.86 6.05 -2.38 -0.01 2.85 16 44 H -0.02 -0.85 7.50 -2.39 -0.02 -0.87 16 45 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.05 1.70 8.01 -2.39 -0.02 1.68 16 Total: -1.00 -72.01 352.35 4.56 -67.44 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 0.94 Total: 12.23 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 6.29 Total: 6.45 kcal Atomic # 7 Polarization: -104.03 SS G_CDS: -4.64 Total: -108.67 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.05 Total: -24.14 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -72.01 4.56 -67.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050616656.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.122 kcal (2) G-P(sol) polarization free energy of solvation -72.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.75 seconds