Wall clock time and date at job start Tue Mar 31 2020 06:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47397 * 2 1 4 4 C 1.50699 * 115.54752 * 304.57854 * 3 2 1 5 5 O 1.21287 * 119.99994 * 114.13855 * 4 3 2 6 6 N 1.34774 * 120.00445 * 294.13364 * 4 3 2 7 7 C 1.47172 * 135.99619 * 4.93356 * 6 4 3 8 8 C 1.52664 * 87.96118 * 206.73028 * 7 6 4 9 9 C 1.47157 * 136.00649 * 185.29402 * 6 4 3 10 10 C 1.52562 * 113.91358 * 88.15277 * 8 7 6 11 11 C 1.53347 * 109.13104 * 190.30767 * 10 8 7 12 12 N 1.46885 * 108.75090 * 307.75728 * 11 10 8 13 13 C 1.36933 * 120.46494 * 235.60392 * 12 11 10 14 14 H 1.08005 * 119.99892 * 32.94252 * 13 12 11 15 15 C 1.38812 * 120.00173 * 212.94333 * 13 12 11 16 16 N 1.31615 * 120.00163 * 11.24581 * 15 13 12 17 17 Si 1.86804 * 119.99795 * 191.24773 * 15 13 12 18 18 H 1.48494 * 109.47353 * 359.97438 * 17 15 13 19 19 H 1.48507 * 109.46970 * 120.00429 * 17 15 13 20 20 H 1.48500 * 109.47003 * 239.99769 * 17 15 13 21 21 C 1.46890 * 119.07367 * 55.62804 * 12 11 10 22 22 C 1.52556 * 114.24957 * 220.74822 * 8 7 6 23 23 C 1.53005 * 117.50327 * 90.24823 * 3 2 1 24 24 C 1.53008 * 117.50112 * 158.91188 * 3 2 1 25 25 H 1.08999 * 109.47557 * 185.26515 * 1 2 3 26 26 H 1.08995 * 109.47431 * 305.27129 * 1 2 3 27 27 H 1.09008 * 109.46606 * 65.26900 * 1 2 3 28 28 H 1.08994 * 109.47581 * 239.99293 * 2 1 3 29 29 H 1.09005 * 109.47047 * 119.99555 * 2 1 3 30 30 H 1.09005 * 113.48683 * 321.42649 * 7 6 4 31 31 H 1.08994 * 113.49063 * 91.93700 * 7 6 4 32 32 H 1.09002 * 113.49300 * 268.06843 * 9 6 4 33 33 H 1.08999 * 113.48868 * 38.51236 * 9 6 4 34 34 H 1.09004 * 109.52428 * 310.20744 * 10 8 7 35 35 H 1.08999 * 109.52417 * 70.40893 * 10 8 7 36 36 H 1.09000 * 109.59110 * 187.97798 * 11 10 8 37 37 H 1.09004 * 109.71455 * 67.60871 * 11 10 8 38 38 H 0.96999 * 120.00310 * 179.97438 * 16 15 13 39 39 H 1.09004 * 109.59227 * 184.59071 * 21 12 11 40 40 H 1.09000 * 109.59526 * 64.14136 * 21 12 11 41 41 H 1.08999 * 109.52641 * 289.73856 * 22 8 7 42 42 H 1.09000 * 109.52618 * 49.95204 * 22 8 7 43 43 H 1.08996 * 117.50234 * 215.00198 * 23 3 2 44 44 H 1.08996 * 117.49722 * 0.02783 * 23 3 2 45 45 H 1.09000 * 117.49522 * 359.97040 * 24 3 2 46 46 H 1.09000 * 117.49833 * 144.97372 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5292 2.3124 -1.1195 5 8 0.8079 3.2559 -0.8734 6 7 1.8738 2.0421 -2.3940 7 6 2.6232 0.9810 -3.0858 8 6 2.9593 2.0010 -4.1708 9 6 1.6716 2.6818 -3.7038 10 6 4.2249 2.8060 -3.8922 11 6 4.3198 3.9580 -4.8998 12 7 4.1827 3.4114 -6.2563 13 6 5.1476 3.6444 -7.1995 14 1 6.1826 3.7318 -6.9031 15 6 4.7958 3.7683 -8.5365 16 7 3.5293 3.8841 -8.8757 17 14 6.1197 3.7707 -9.8544 18 1 7.4532 3.6288 -9.2167 19 1 5.8927 2.6369 -10.7862 20 1 6.0655 5.0491 -10.6081 21 6 2.9958 2.6118 -6.5870 22 6 2.8915 1.4497 -5.5916 23 6 2.2811 2.1066 1.3571 24 6 3.4694 1.6864 0.4883 25 1 -0.3634 -1.0233 0.0943 26 1 -0.3634 0.5934 0.8390 27 1 -0.3633 0.4300 -0.9335 28 1 1.8933 -0.5139 -0.8898 29 1 1.8933 -0.5138 0.8901 30 1 3.4960 0.6341 -2.5325 31 1 1.9940 0.1637 -3.4379 32 1 0.7810 2.3313 -4.2256 33 1 1.7408 3.7691 -3.6716 34 1 4.1848 3.2092 -2.8803 35 1 5.0971 2.1602 -3.9938 36 1 5.2866 4.4516 -4.8007 37 1 3.5218 4.6766 -4.7130 38 1 3.2834 3.9710 -9.8100 39 1 3.0904 2.2186 -7.5992 40 1 2.1041 3.2347 -6.5163 41 1 3.7169 0.7564 -5.7532 42 1 1.9442 0.9301 -5.7360 43 1 2.0703 3.1728 1.4402 44 1 2.0768 1.5158 2.2499 45 1 4.0462 0.8193 0.8100 46 1 4.0403 2.4759 -0.0004 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050649114.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:20 Heat of formation + Delta-G solvation = 39.106252 kcal Electronic energy + Delta-G solvation = -24623.063352 eV Core-core repulsion = 21322.010349 eV Total energy + Delta-G solvation = -3301.053003 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.89008 -39.12407 -36.71795 -35.84674 -32.50474 -32.13490 -30.62832 -29.76384 -27.39335 -26.19979 -24.45765 -24.06085 -22.71814 -22.38977 -22.06155 -20.65598 -18.44579 -18.01808 -16.77649 -16.33163 -16.06358 -15.79079 -14.94376 -14.87476 -14.35570 -14.01748 -13.97935 -13.61987 -13.38079 -13.26692 -12.94971 -12.64246 -12.52491 -12.30995 -11.87272 -11.83437 -11.69438 -11.50768 -11.44458 -11.40849 -11.02939 -10.77578 -10.58085 -10.46638 -10.31742 -10.16733 -10.10139 -9.82194 -9.73378 -9.62345 -9.30362 -8.53025 -8.47810 -6.59746 -5.79774 -3.28881 2.64774 2.91072 3.35412 3.43528 3.45314 3.54944 4.31067 4.45467 4.47794 4.60179 4.63106 4.72893 5.09385 5.10547 5.23109 5.24151 5.30424 5.40021 5.43231 5.51820 5.55204 5.59768 5.64165 5.68170 5.68347 5.77019 5.84785 5.93845 5.95088 5.96756 6.06660 6.08220 6.13520 6.27438 6.45833 6.57821 6.62115 6.66622 6.82435 6.96721 7.33647 7.66071 7.78920 7.89839 8.27997 8.48266 9.22061 9.83105 10.41873 11.28033 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.033990 B = 0.003599 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.576428 B = 7778.884500 C = 7964.511016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.078 4.078 3 C -0.151 4.151 4 C 0.578 3.422 5 O -0.545 6.545 6 N -0.636 5.636 7 C 0.104 3.896 8 C -0.075 4.075 9 C 0.114 3.886 10 C -0.104 4.104 11 C 0.147 3.853 12 N -0.590 5.590 13 C -0.254 4.254 14 H 0.063 0.937 15 C 0.006 3.994 16 N -0.903 5.903 17 Si 0.902 3.098 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.290 1.290 21 C 0.173 3.827 22 C -0.125 4.125 23 C -0.146 4.146 24 C -0.158 4.158 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.050 0.950 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.018 0.982 38 H 0.253 0.747 39 H 0.088 0.912 40 H 0.018 0.982 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.102 0.898 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.336 -9.670 16.262 19.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.116 4.116 3 C -0.154 4.154 4 C 0.367 3.633 5 O -0.423 6.423 6 N -0.370 5.370 7 C -0.020 4.020 8 C -0.076 4.076 9 C -0.008 4.008 10 C -0.144 4.144 11 C 0.020 3.980 12 N -0.313 5.313 13 C -0.384 4.384 14 H 0.081 0.919 15 C -0.193 4.193 16 N -0.547 5.547 17 Si 0.732 3.268 18 H -0.202 1.202 19 H -0.216 1.216 20 H -0.217 1.217 21 C 0.047 3.953 22 C -0.165 4.165 23 C -0.183 4.183 24 C -0.195 4.195 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.035 0.965 38 H 0.064 0.936 39 H 0.107 0.893 40 H 0.037 0.963 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.853 -9.074 16.447 19.000 hybrid contribution 0.503 -0.052 -0.764 0.917 sum -2.350 -9.127 15.683 18.297 Atomic orbital electron populations 1.21729 0.95113 1.01538 1.02436 1.21011 0.96346 0.91641 1.02566 1.21423 1.01297 0.97086 0.95612 1.18957 0.79235 0.84082 0.81043 1.90690 1.37242 1.31298 1.83031 1.49582 1.54943 1.27743 1.04722 1.23173 0.94967 0.92129 0.91683 1.21647 0.95202 0.95422 0.95314 1.23080 0.98013 0.99784 0.79949 1.21695 0.95117 0.98767 0.98789 1.20891 0.98841 0.92456 0.85799 1.43966 1.22770 1.57463 1.07068 1.19206 0.87976 1.44030 0.87162 0.91908 1.25188 0.95980 0.99813 0.98310 1.69980 1.15088 1.53202 1.16424 0.86225 0.81365 0.77269 0.81913 1.20236 1.21568 1.21676 1.20769 0.88508 0.88956 0.97051 1.22084 1.00338 1.00503 0.93540 1.23013 1.00945 1.01903 0.92474 1.23076 0.89784 1.03750 1.02936 0.92405 0.92303 0.92818 0.91175 0.91026 0.90757 0.90041 0.90059 0.90446 0.93150 0.91751 0.92697 0.96453 0.93644 0.89336 0.96347 0.91925 0.92896 0.87962 0.88056 0.87929 0.88325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.57 37.15 0.36 -1.13 16 2 C -0.08 -0.73 5.88 -26.74 -0.16 -0.88 16 3 C -0.15 -1.74 1.84 -155.66 -0.29 -2.02 16 4 C 0.58 8.91 6.40 -10.99 -0.07 8.84 16 5 O -0.55 -10.53 17.49 5.55 0.10 -10.43 16 6 N -0.64 -9.29 3.46 -185.31 -0.64 -9.93 16 7 C 0.10 1.29 6.93 -8.36 -0.06 1.23 16 8 C -0.07 -1.15 0.83 -155.16 -0.13 -1.28 16 9 C 0.11 1.80 7.56 -8.22 -0.06 1.74 16 10 C -0.10 -1.73 5.26 -26.78 -0.14 -1.87 16 11 C 0.15 3.00 6.41 -3.65 -0.02 2.98 16 12 N -0.59 -14.20 2.94 -172.18 -0.51 -14.71 16 13 C -0.25 -6.77 9.54 -15.06 -0.14 -6.92 16 14 H 0.06 1.66 7.85 -52.48 -0.41 1.25 16 15 C 0.01 0.16 5.02 -17.43 -0.09 0.07 16 16 N -0.90 -25.59 11.15 55.49 0.62 -24.98 16 17 Si 0.90 21.23 29.57 -169.99 -5.03 16.21 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 21 C 0.17 3.88 5.21 -3.64 -0.02 3.86 16 22 C -0.12 -2.13 5.31 -26.77 -0.14 -2.27 16 23 C -0.15 -1.50 9.75 -26.69 -0.26 -1.76 16 24 C -0.16 -1.55 9.96 -26.68 -0.27 -1.81 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.63 7.64 -51.92 -0.40 0.23 16 28 H 0.07 0.63 7.50 -51.93 -0.39 0.24 16 29 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 30 H 0.07 0.84 8.10 -51.93 -0.42 0.41 16 31 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 32 H 0.08 1.22 8.06 -51.93 -0.42 0.81 16 33 H 0.08 1.37 7.54 -51.93 -0.39 0.98 16 34 H 0.05 0.79 7.95 -51.93 -0.41 0.38 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.05 1.12 7.92 -51.93 -0.41 0.71 16 37 H 0.02 0.37 7.61 -51.93 -0.40 -0.02 16 38 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 39 H 0.09 2.25 6.12 -51.93 -0.32 1.93 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 0.79 8.09 -51.93 -0.42 0.37 16 43 H 0.10 1.20 8.00 -51.93 -0.42 0.78 16 44 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 363.42 15.07 5.48 5.48 Total: -1.00 -30.64 363.42 -9.63 -40.27 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -8.16 Total: -0.69 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -1.49 Total: -1.22 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: -0.53 Total: -49.61 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.10 Total: -10.43 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.64 -9.63 -40.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050649114.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.378 kcal (2) G-P(sol) polarization free energy of solvation -30.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds