Wall clock time and date at job start Tue Mar 31 2020 06:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.47096 * 120.00310 * 2 1 4 4 O 1.21608 * 120.00628 * 180.02562 * 3 2 1 5 5 N 1.34779 * 119.99671 * 359.97438 * 3 2 1 6 6 C 1.46503 * 120.00100 * 180.02562 * 5 3 2 7 7 H 1.08999 * 109.20664 * 35.63703 * 6 5 3 8 8 C 1.50117 * 109.21122 * 155.00305 * 6 5 3 9 9 C 1.52526 * 105.41662 * 218.02478 * 8 6 5 10 10 C 1.46240 * 114.27771 * 270.59144 * 9 8 6 11 11 N 1.50171 * 107.53093 * 58.40915 * 10 9 8 12 12 C 1.36936 * 120.53813 * 109.61064 * 11 10 9 13 13 H 1.07996 * 119.99797 * 156.72238 * 12 11 10 14 14 C 1.38813 * 119.99975 * 336.71704 * 12 11 10 15 15 N 1.31617 * 119.99951 * 340.41293 * 14 12 11 16 16 Si 1.86795 * 119.99948 * 160.41428 * 14 12 11 17 17 H 1.48497 * 109.47463 * 90.00216 * 16 14 12 18 18 H 1.48507 * 109.47264 * 209.99907 * 16 14 12 19 19 H 1.48501 * 109.47188 * 329.99842 * 16 14 12 20 20 C 1.43428 * 118.92023 * 289.58666 * 11 10 9 21 21 C 1.54845 * 109.20774 * 276.32620 * 6 5 3 22 22 C 1.32993 * 119.99846 * 179.97438 * 2 1 3 23 23 C 1.51578 * 135.78415 * 0.02562 * 22 2 1 24 24 C 1.53844 * 86.75568 * 205.12927 * 23 22 2 25 25 C 1.51583 * 135.78107 * 179.97438 * 22 2 1 26 26 H 1.08998 * 109.46931 * 270.00380 * 1 2 3 27 27 H 1.08997 * 109.47210 * 30.00382 * 1 2 3 28 28 H 1.09003 * 109.46966 * 150.00619 * 1 2 3 29 29 H 0.96999 * 119.99902 * 0.02562 * 5 3 2 30 30 H 1.08999 * 110.25264 * 336.99664 * 8 6 5 31 31 H 1.09001 * 110.25361 * 98.90697 * 8 6 5 32 32 H 1.09001 * 108.52205 * 31.83509 * 9 8 6 33 33 H 1.09003 * 108.52183 * 149.50946 * 9 8 6 34 34 H 1.08996 * 109.84400 * 177.91458 * 10 9 8 35 35 H 1.09000 * 109.84560 * 298.90012 * 10 9 8 36 36 H 0.97006 * 120.00321 * 179.97438 * 15 14 12 37 37 H 1.09007 * 108.16015 * 213.28425 * 20 11 10 38 38 H 1.08994 * 108.16400 * 330.06171 * 20 11 10 39 39 H 1.09010 * 109.35774 * 320.99504 * 21 6 5 40 40 H 1.09003 * 109.36299 * 80.57964 * 21 6 5 41 41 H 1.08997 * 113.67241 * 90.66785 * 23 22 2 42 42 H 1.09001 * 113.66735 * 319.59077 * 23 22 2 43 43 H 1.08997 * 113.66021 * 89.68570 * 24 23 22 44 44 H 1.08997 * 113.65637 * 220.72551 * 24 23 22 45 45 H 1.09004 * 113.66712 * 40.40970 * 25 22 2 46 46 H 1.08994 * 113.75876 * 269.34784 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 3.4586 1.2739 -0.0005 5 7 1.5686 2.4411 -0.0005 6 6 2.3011 3.7098 -0.0011 7 1 3.2049 3.6019 -0.6008 8 6 1.4354 4.7797 -0.6006 9 6 2.3791 5.6516 -1.4226 10 6 2.9772 6.7587 -0.6775 11 7 3.7271 6.1702 0.4828 12 6 5.0961 6.1890 0.5081 13 1 5.6197 6.1261 1.4506 14 6 5.8109 6.2890 -0.6777 15 7 5.2351 5.9829 -1.8209 16 14 7.5899 6.8578 -0.6507 17 1 8.4836 5.6814 -0.5010 18 1 7.9045 7.5598 -1.9210 19 1 7.7960 7.7846 0.4912 20 6 2.9861 5.5884 1.5643 21 6 2.6954 4.0711 1.4521 22 6 2.1719 -1.1518 0.0005 23 6 1.7997 -2.6211 0.0007 24 6 3.1688 -2.8781 0.6536 25 6 3.6306 -1.5641 0.0002 26 1 -0.3633 0.0001 1.0277 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8901 -0.5138 29 1 0.5987 2.4410 -0.0005 30 1 0.6766 4.3346 -1.2440 31 1 0.9638 5.3684 0.1862 32 1 3.1803 5.0233 -1.8118 33 1 1.8238 6.0641 -2.2650 34 1 3.6635 7.3095 -1.3206 35 1 2.1951 7.4248 -0.3131 36 1 5.7344 6.0531 -2.6496 37 1 3.5401 5.7607 2.4872 38 1 2.0319 6.1094 1.6414 39 1 1.8779 3.8091 2.1240 40 1 3.5865 3.5106 1.7348 41 1 1.7038 -3.0484 -0.9974 42 1 0.9551 -2.8584 0.6476 43 1 3.1478 -2.8415 1.7427 44 1 3.6784 -3.7610 0.2678 45 1 4.2587 -0.9511 0.6468 46 1 4.0497 -1.6951 -0.9974 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052372970.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:52 Heat of formation + Delta-G solvation = 24.972702 kcal Electronic energy + Delta-G solvation = -24477.457860 eV Core-core repulsion = 21175.791980 eV Total energy + Delta-G solvation = -3301.665879 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.83273 -38.50885 -37.34582 -34.51429 -33.27530 -31.91049 -31.48688 -29.64843 -26.62007 -26.12145 -25.59242 -24.10159 -23.47941 -22.24472 -20.38536 -19.94916 -19.04458 -17.86462 -16.64728 -16.30635 -15.65924 -15.56465 -15.00737 -14.53795 -14.48699 -13.82375 -13.76188 -13.49943 -13.17802 -12.99282 -12.54006 -12.48217 -12.40537 -12.17652 -11.91472 -11.74885 -11.63029 -11.39111 -11.19941 -10.96786 -10.71458 -10.55632 -10.52181 -10.31484 -10.13182 -9.96907 -9.70386 -9.44200 -9.29124 -9.18508 -8.83037 -8.45937 -8.25495 -6.63834 -5.71462 -3.09720 1.49722 3.44732 3.51707 3.53869 3.60038 3.65559 4.40832 4.46986 4.59040 4.68381 5.01249 5.03096 5.23410 5.40948 5.42946 5.45702 5.50558 5.57753 5.61838 5.63883 5.69031 5.79614 5.86506 5.95392 6.07513 6.08868 6.17960 6.30299 6.33511 6.38196 6.47338 6.55204 6.70655 6.77730 6.94392 6.97896 7.01666 7.11406 7.24202 7.29461 7.64574 7.82059 8.02960 8.05032 8.50548 8.75053 9.26981 9.94555 10.46905 11.36455 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.018513 B = 0.004311 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.062841 B = 6493.976890 C = 7371.349088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.165 4.165 3 C 0.547 3.453 4 O -0.531 6.531 5 N -0.726 5.726 6 C 0.156 3.844 7 H 0.102 0.898 8 C -0.121 4.121 9 C -0.129 4.129 10 C 0.165 3.835 11 N -0.588 5.588 12 C -0.248 4.248 13 H 0.067 0.933 14 C 0.003 3.997 15 N -0.900 5.900 16 Si 0.899 3.101 17 H -0.289 1.289 18 H -0.291 1.291 19 H -0.281 1.281 20 C 0.162 3.838 21 C -0.150 4.150 22 C -0.077 4.077 23 C -0.105 4.105 24 C -0.141 4.141 25 C -0.102 4.102 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.389 0.611 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.029 0.971 34 H 0.090 0.910 35 H 0.006 0.994 36 H 0.252 0.748 37 H 0.033 0.967 38 H 0.028 0.972 39 H 0.043 0.957 40 H 0.055 0.945 41 H 0.097 0.903 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.229 -12.962 2.554 18.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.168 4.168 3 C 0.335 3.665 4 O -0.409 6.409 5 N -0.376 5.376 6 C 0.053 3.947 7 H 0.120 0.880 8 C -0.159 4.159 9 C -0.168 4.168 10 C 0.042 3.958 11 N -0.309 5.309 12 C -0.378 4.378 13 H 0.084 0.916 14 C -0.194 4.194 15 N -0.545 5.545 16 Si 0.729 3.271 17 H -0.216 1.216 18 H -0.217 1.217 19 H -0.207 1.207 20 C 0.032 3.968 21 C -0.193 4.193 22 C -0.079 4.079 23 C -0.142 4.142 24 C -0.179 4.179 25 C -0.138 4.138 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.223 0.777 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.121 0.879 33 H 0.047 0.953 34 H 0.108 0.892 35 H 0.024 0.976 36 H 0.062 0.938 37 H 0.051 0.949 38 H 0.046 0.954 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.115 0.885 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.106 0.894 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.248 -12.890 2.385 17.272 hybrid contribution 0.371 0.077 -0.064 0.384 sum -10.877 -12.812 2.321 16.966 Atomic orbital electron populations 1.20653 0.90926 1.02650 1.02157 1.20653 0.95674 0.91980 1.08482 1.18216 0.87438 0.83836 0.77058 1.90816 1.13361 1.87507 1.49235 1.46458 1.09645 1.06537 1.75007 1.21235 0.95668 0.80057 0.97730 0.88048 1.21354 0.97630 0.97476 0.99413 1.20933 0.98452 1.00205 0.97223 1.20165 0.93243 0.93246 0.89169 1.44267 1.02374 1.63884 1.20418 1.19187 0.81538 1.44767 0.92290 0.91556 1.24868 0.97546 1.01101 0.95922 1.69959 1.36355 1.50652 0.97549 0.86350 0.85395 0.78577 0.76800 1.21566 1.21687 1.20680 1.20352 0.94489 0.89878 0.92051 1.23300 0.99723 1.01270 0.94958 1.23314 0.97902 0.93412 0.93260 1.22313 0.98275 0.92036 1.01542 1.22819 0.96404 0.98216 1.00412 1.22251 0.94101 0.95575 1.01907 0.91341 0.91564 0.91504 0.77654 0.92954 0.91958 0.87902 0.95255 0.89151 0.97617 0.93817 0.94896 0.95389 0.93824 0.92599 0.88513 0.90660 0.89969 0.90805 0.89389 0.88658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 9.56 36.01 0.34 -0.69 16 2 C -0.16 -2.27 6.00 -102.85 -0.62 -2.89 16 3 C 0.55 9.85 7.70 -12.67 -0.10 9.75 16 4 O -0.53 -11.99 14.77 5.27 0.08 -11.92 16 5 N -0.73 -11.98 4.92 -55.44 -0.27 -12.25 16 6 C 0.16 3.10 2.22 -68.39 -0.15 2.95 16 7 H 0.10 2.59 6.26 -51.93 -0.33 2.26 16 8 C -0.12 -2.18 5.33 -28.41 -0.15 -2.33 16 9 C -0.13 -2.77 5.02 -30.19 -0.15 -2.93 16 10 C 0.17 3.86 5.25 -5.20 -0.03 3.83 16 11 N -0.59 -14.67 2.60 -175.09 -0.46 -15.13 16 12 C -0.25 -6.90 9.63 -15.06 -0.14 -7.04 16 13 H 0.07 1.85 7.89 -52.49 -0.41 1.43 16 14 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16 15 N -0.90 -25.53 9.43 55.49 0.52 -25.00 16 16 Si 0.90 22.18 29.60 -169.99 -5.03 17.15 16 17 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 C 0.16 3.49 5.18 -4.67 -0.02 3.46 16 21 C -0.15 -3.05 5.98 -24.76 -0.15 -3.19 16 22 C -0.08 -0.99 6.55 -100.39 -0.66 -1.65 16 23 C -0.10 -0.96 7.76 -27.01 -0.21 -1.17 16 24 C -0.14 -1.35 8.11 -25.94 -0.21 -1.56 16 25 C -0.10 -1.33 7.06 -27.01 -0.19 -1.52 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.59 6.70 -51.93 -0.35 0.24 16 28 H 0.07 0.55 7.88 -51.93 -0.41 0.14 16 29 H 0.39 5.05 6.58 -40.82 -0.27 4.78 16 30 H 0.05 0.82 7.85 -51.93 -0.41 0.41 16 31 H 0.06 1.07 6.29 -51.93 -0.33 0.74 16 32 H 0.10 2.63 5.30 -51.93 -0.27 2.35 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.09 2.36 6.05 -51.93 -0.31 2.05 16 35 H 0.01 0.12 8.12 -51.93 -0.42 -0.30 16 36 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.03 0.71 7.99 -51.93 -0.41 0.30 16 38 H 0.03 0.55 6.88 -51.93 -0.36 0.19 16 39 H 0.04 0.77 8.13 -51.92 -0.42 0.35 16 40 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.09 1.37 7.48 -51.93 -0.39 0.98 16 46 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 351.73 15.07 5.30 5.30 Total: -1.00 -31.29 351.73 -9.99 -41.29 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -7.61 Total: 5.53 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -2.52 Total: -4.97 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.21 Total: -52.38 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.08 Total: -11.92 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.29 -9.99 -41.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052372970.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.258 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds