Wall clock time and date at job start Tue Mar 31 2020 06:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.47103 * 120.00093 * 2 1 4 4 O 1.21613 * 120.00138 * 179.97438 * 3 2 1 5 5 N 1.34784 * 119.99680 * 0.02562 * 3 2 1 6 6 C 1.46502 * 119.99675 * 179.97438 * 5 3 2 7 7 H 1.09004 * 108.31444 * 327.38294 * 6 5 3 8 8 C 1.52568 * 108.50901 * 209.76579 * 6 5 3 9 9 C 1.50886 * 109.35196 * 153.72983 * 8 6 5 10 10 C 1.53946 * 110.09524 * 91.88993 * 9 8 6 11 11 N 1.47608 * 112.14003 * 319.43433 * 10 9 8 12 12 C 1.36933 * 118.64365 * 137.86879 * 11 10 9 13 13 H 1.07999 * 120.00218 * 206.49968 * 12 11 10 14 14 C 1.38817 * 120.00084 * 26.49481 * 12 11 10 15 15 N 1.31617 * 120.00005 * 15.69243 * 14 12 11 16 16 Si 1.86798 * 119.99984 * 195.68761 * 14 12 11 17 17 H 1.48499 * 109.47187 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47324 * 120.00295 * 16 14 12 19 19 H 1.48503 * 109.47031 * 240.00392 * 16 14 12 20 20 C 1.44657 * 122.54239 * 317.85875 * 11 10 9 21 21 C 1.47093 * 108.51098 * 84.99781 * 6 5 3 22 22 C 1.32992 * 119.99734 * 179.97438 * 2 1 3 23 23 C 1.51414 * 136.31106 * 179.62843 * 22 2 1 24 24 C 1.53383 * 87.51587 * 206.06202 * 23 22 2 25 25 C 1.51402 * 136.31970 * 0.02562 * 22 2 1 26 26 H 1.09004 * 109.47214 * 90.00241 * 1 2 3 27 27 H 1.09005 * 109.47067 * 210.00069 * 1 2 3 28 28 H 1.08997 * 109.47535 * 330.00014 * 1 2 3 29 29 H 0.96993 * 119.99840 * 359.97438 * 5 3 2 30 30 H 1.09000 * 109.48866 * 273.69053 * 8 6 5 31 31 H 1.09001 * 109.49242 * 33.76974 * 8 6 5 32 32 H 1.09001 * 109.36270 * 212.08285 * 9 8 6 33 33 H 1.09003 * 109.36554 * 331.82313 * 9 8 6 34 34 H 1.09003 * 108.94492 * 80.11870 * 10 9 8 35 35 H 1.09001 * 108.94845 * 198.83789 * 10 9 8 36 36 H 0.96996 * 120.00022 * 179.97438 * 15 14 12 37 37 H 1.09008 * 109.61440 * 330.83950 * 20 11 10 38 38 H 1.09005 * 109.32244 * 210.89957 * 20 11 10 39 39 H 1.08998 * 109.32829 * 304.31570 * 21 6 5 40 40 H 1.08997 * 109.32765 * 63.96400 * 21 6 5 41 41 H 1.08991 * 113.56061 * 320.64396 * 23 22 2 42 42 H 1.08994 * 113.55764 * 91.37758 * 23 22 2 43 43 H 1.08997 * 113.96614 * 220.29501 * 24 23 22 44 44 H 1.08998 * 113.60042 * 88.79698 * 24 23 22 45 45 H 1.08996 * 113.56097 * 268.61762 * 25 22 2 46 46 H 1.08994 * 113.56168 * 39.28694 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 3.4587 1.2739 0.0005 5 7 1.5686 2.4412 0.0005 6 6 2.3011 3.7099 0.0011 7 1 3.2272 3.5705 0.5588 8 6 1.4556 4.7570 0.7198 9 6 2.3594 5.8160 1.3014 10 6 2.5370 6.9695 0.2975 11 7 2.6894 6.4828 -1.0877 12 6 2.0316 7.1425 -2.0913 13 1 1.7604 6.6176 -2.9954 14 6 1.7132 8.4859 -1.9467 15 7 2.2961 9.2031 -1.0096 16 14 0.4577 9.2757 -3.0821 17 1 -0.0480 8.2621 -4.0424 18 1 -0.6739 9.8033 -2.2783 19 1 1.0967 10.3895 -3.8281 20 6 3.5061 5.3374 -1.4246 21 6 2.6399 4.0541 -1.3883 22 6 2.1719 -1.1518 0.0005 23 6 3.6250 -1.5771 -0.0061 24 6 3.1708 -2.8820 -0.6720 25 6 1.8138 -2.6228 0.0007 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8899 0.5138 29 1 0.5986 2.4411 0.0005 30 1 0.7661 5.2163 0.0115 31 1 0.8908 4.2808 1.5213 32 1 1.9191 6.2017 2.2210 33 1 3.3330 5.3786 1.5226 34 1 1.6650 7.6215 0.3497 35 1 3.4236 7.5422 0.5696 36 1 2.0739 10.1419 -0.9088 37 1 4.3214 5.2454 -0.7069 38 1 3.9173 5.4695 -2.4255 39 1 3.1949 3.2313 -1.8388 40 1 1.7225 4.2220 -1.9523 41 1 4.2566 -0.9604 -0.6455 42 1 4.0420 -1.7188 0.9909 43 1 3.6835 -3.7698 -0.3017 44 1 3.1399 -2.8289 -1.7602 45 1 1.7337 -3.0516 0.9996 46 1 0.9596 -2.8634 -0.6322 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052372971.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:58 Heat of formation + Delta-G solvation = 17.196804 kcal Electronic energy + Delta-G solvation = -24089.472813 eV Core-core repulsion = 20787.469746 eV Total energy + Delta-G solvation = -3302.003068 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.10394 -38.73947 -37.39267 -34.72294 -33.47401 -32.13786 -31.52430 -29.76404 -26.73041 -26.09064 -25.68657 -24.23064 -23.53600 -22.54453 -20.47803 -20.09079 -19.22220 -18.06236 -16.69311 -16.45788 -15.98466 -15.70365 -15.09252 -14.79398 -14.48076 -13.99622 -13.74201 -13.48322 -13.36951 -13.20053 -12.73678 -12.62617 -12.57861 -12.43469 -12.08662 -11.91421 -11.75960 -11.36105 -11.21650 -11.14049 -10.84207 -10.67835 -10.58616 -10.38048 -10.20947 -10.04288 -9.84289 -9.72950 -9.57923 -9.38969 -8.99736 -8.65379 -8.36773 -6.62297 -5.74919 -3.18196 1.33484 3.36727 3.38687 3.44787 3.45856 3.47742 4.25536 4.35753 4.52371 4.55055 4.88488 4.89561 5.10999 5.23775 5.33771 5.37905 5.43409 5.44100 5.50029 5.54841 5.59351 5.66973 5.72162 5.79590 5.91287 6.04426 6.07108 6.11056 6.14447 6.29042 6.39228 6.51259 6.54606 6.58159 6.72627 6.80643 6.88204 6.90735 6.98431 7.10461 7.47301 7.74267 7.81966 7.86092 8.49655 8.50652 9.27756 9.94876 10.40753 11.32472 Molecular weight = 292.19amu Principal moments of inertia in cm(-1) A = 0.028989 B = 0.003327 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.645852 B = 8414.484576 C = 8581.183225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.163 4.163 3 C 0.552 3.448 4 O -0.544 6.544 5 N -0.724 5.724 6 C 0.161 3.839 7 H 0.074 0.926 8 C -0.111 4.111 9 C -0.140 4.140 10 C 0.177 3.823 11 N -0.591 5.591 12 C -0.255 4.255 13 H 0.065 0.935 14 C 0.003 3.997 15 N -0.904 5.904 16 Si 0.899 3.101 17 H -0.278 1.278 18 H -0.290 1.290 19 H -0.291 1.291 20 C 0.162 3.838 21 C -0.153 4.153 22 C -0.077 4.077 23 C -0.102 4.102 24 C -0.142 4.142 25 C -0.105 4.105 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.395 0.605 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.025 0.975 36 H 0.252 0.748 37 H 0.034 0.966 38 H 0.047 0.953 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.097 0.903 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.670 -20.807 4.344 21.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.166 4.166 3 C 0.340 3.660 4 O -0.423 6.423 5 N -0.375 5.375 6 C 0.058 3.942 7 H 0.092 0.908 8 C -0.149 4.149 9 C -0.180 4.180 10 C 0.052 3.948 11 N -0.312 5.312 12 C -0.385 4.385 13 H 0.083 0.917 14 C -0.195 4.195 15 N -0.549 5.549 16 Si 0.729 3.271 17 H -0.203 1.203 18 H -0.217 1.217 19 H -0.218 1.218 20 C 0.033 3.967 21 C -0.194 4.194 22 C -0.079 4.079 23 C -0.138 4.138 24 C -0.179 4.179 25 C -0.142 4.142 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.229 0.771 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.043 0.957 36 H 0.062 0.938 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.104 0.896 42 H 0.113 0.887 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.115 0.885 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.800 -20.592 4.399 21.242 hybrid contribution -1.245 0.525 -0.587 1.473 sum -4.045 -20.067 3.813 20.823 Atomic orbital electron populations 1.20671 0.90717 1.02753 1.02434 1.20566 0.95777 0.91685 1.08585 1.18209 0.87306 0.83859 0.76620 1.90755 1.13481 1.87700 1.50352 1.46439 1.10216 1.06180 1.74641 1.20024 0.95238 0.81150 0.97769 0.90813 1.21242 0.98790 0.95765 0.99135 1.21980 0.98235 0.98281 0.99490 1.21025 1.01131 0.91195 0.81425 1.43705 1.53506 1.31047 1.02966 1.19244 1.29937 0.91224 0.98080 0.91732 1.25027 1.00013 0.95977 0.98504 1.70081 1.42550 1.06814 1.35433 0.86273 0.81371 0.79191 0.80239 1.20336 1.21661 1.21794 1.20589 0.91411 0.86162 0.98529 1.21854 1.01890 1.00117 0.95553 1.23181 0.98058 0.93546 0.93069 1.22147 0.94174 0.95751 1.01753 1.22712 0.96629 0.98205 1.00393 1.22269 0.98459 0.91871 1.01577 0.91126 0.91403 0.91477 0.77093 0.90144 0.93245 0.92583 0.93422 0.90717 0.95735 0.93787 0.94763 0.93417 0.92977 0.92013 0.89574 0.88730 0.90590 0.89828 0.88462 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 9.57 36.01 0.34 -0.61 16 2 C -0.16 -1.98 6.00 -102.85 -0.62 -2.60 16 3 C 0.55 8.60 7.59 -12.66 -0.10 8.50 16 4 O -0.54 -10.29 14.65 5.27 0.08 -10.21 16 5 N -0.72 -10.66 4.83 -58.00 -0.28 -10.94 16 6 C 0.16 2.79 1.95 -70.99 -0.14 2.65 16 7 H 0.07 1.41 6.64 -51.93 -0.34 1.07 16 8 C -0.11 -1.91 5.00 -28.01 -0.14 -2.05 16 9 C -0.14 -2.64 5.70 -27.30 -0.16 -2.79 16 10 C 0.18 4.18 4.66 -2.94 -0.01 4.17 16 11 N -0.59 -14.53 2.27 -172.02 -0.39 -14.92 16 12 C -0.25 -6.89 9.45 -15.06 -0.14 -7.03 16 13 H 0.06 1.74 7.88 -52.49 -0.41 1.32 16 14 C 0.00 0.09 4.87 -17.43 -0.08 0.00 16 15 N -0.90 -26.03 11.01 55.49 0.61 -25.42 16 16 Si 0.90 21.57 29.58 -169.99 -5.03 16.54 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 C 0.16 3.51 5.65 -4.05 -0.02 3.49 16 21 C -0.15 -2.91 5.20 -28.58 -0.15 -3.06 16 22 C -0.08 -0.86 6.60 -100.48 -0.66 -1.52 16 23 C -0.10 -1.10 6.99 -27.55 -0.19 -1.30 16 24 C -0.14 -1.14 8.17 -26.20 -0.21 -1.35 16 25 C -0.10 -0.82 7.71 -27.41 -0.21 -1.03 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.50 7.91 -51.93 -0.41 0.09 16 28 H 0.07 0.54 6.70 -51.93 -0.35 0.19 16 29 H 0.39 4.81 6.71 -40.82 -0.27 4.53 16 30 H 0.08 1.55 7.48 -51.93 -0.39 1.16 16 31 H 0.05 0.73 8.05 -51.93 -0.42 0.32 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.05 0.88 7.32 -51.93 -0.38 0.50 16 34 H 0.07 1.95 6.33 -51.93 -0.33 1.62 16 35 H 0.02 0.63 8.03 -51.93 -0.42 0.22 16 36 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.03 0.73 8.06 -51.92 -0.42 0.31 16 38 H 0.05 1.06 7.99 -51.93 -0.41 0.64 16 39 H 0.05 1.00 7.95 -51.93 -0.41 0.58 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.09 1.13 7.49 -51.93 -0.39 0.74 16 42 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 356.77 15.07 5.38 5.38 Total: -1.00 -30.85 356.77 -10.01 -40.85 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -7.88 Total: 3.26 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -2.50 Total: -4.54 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -0.06 Total: -51.28 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.08 Total: -10.21 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.85 -10.01 -40.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052372971.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.051 kcal (2) G-P(sol) polarization free energy of solvation -30.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds